Wall clock time and date at job start Mon Mar 30 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.35668 * 116.99865 * 179.97438 * 3 2 1 5 5 C 1.38554 * 120.17249 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.12018 * 179.97438 * 5 4 3 7 7 C 1.38720 * 120.47743 * 0.02562 * 6 5 4 8 8 C 1.37653 * 120.34427 * 0.02562 * 7 6 5 9 9 C 1.40131 * 119.86727 * 359.70023 * 8 7 6 10 10 C 1.46719 * 120.23149 * 180.29770 * 9 8 7 11 11 N 1.30687 * 119.99829 * 180.27718 * 10 9 8 12 12 N 1.40102 * 119.99965 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99953 * 179.97438 * 12 11 10 14 14 O 1.21974 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.40754 * 120.00025 * 180.02562 * 13 12 11 16 16 H 1.07998 * 119.99788 * 359.97438 * 15 13 12 17 17 C 1.40213 * 120.00058 * 180.02562 * 15 13 12 18 18 N 1.30593 * 119.99814 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99790 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.47498 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47503 * 120.00161 * 19 17 15 22 22 H 1.48508 * 109.46855 * 239.99786 * 19 17 15 23 23 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 25 25 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 26 26 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 27 27 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 28 28 H 1.07995 * 119.94453 * 359.94742 * 5 4 3 29 29 H 1.08006 * 119.76295 * 179.97438 * 6 5 4 30 30 H 1.07997 * 119.82511 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.06287 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.99995 * 0.27136 * 10 9 8 33 33 H 0.96996 * 120.00138 * 359.97438 * 12 11 10 34 34 H 0.97003 * 119.99680 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 4.1987 0.4288 0.0005 6 6 5.5683 0.6111 0.0005 7 6 6.1081 1.8890 0.0011 8 6 5.2843 2.9918 0.0022 9 6 3.8931 2.8237 -0.0036 10 6 3.0077 3.9935 -0.0091 11 7 1.7109 3.8315 -0.0091 12 7 0.8653 4.9486 -0.0148 13 6 -0.4720 4.7814 -0.0153 14 8 -0.9462 3.6576 -0.0112 15 6 -1.3215 5.9037 -0.0216 16 1 -0.9016 6.8987 -0.0257 17 6 -2.7128 5.7298 -0.0216 18 7 -3.2205 4.5266 -0.0161 19 14 -3.8401 7.2193 -0.0307 20 1 -3.0226 8.4589 -0.0366 21 1 -4.6963 7.1847 -1.2435 22 1 -4.6979 7.1982 1.1814 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.7879 -0.5700 0.0009 29 1 6.2235 -0.2476 0.0009 30 1 7.1802 2.0192 0.0015 31 1 5.7094 3.9846 0.0030 32 1 3.4275 4.9885 -0.0131 33 1 1.2424 5.8422 -0.0185 34 1 -4.1830 4.4064 -0.0165 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725392392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:56 Heat of formation + Delta-G solvation = -6.363622 kcal Electronic energy + Delta-G solvation = -19010.821049 eV Core-core repulsion = 15910.349946 eV Total energy + Delta-G solvation = -3100.471102 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78866 -37.48131 -37.09766 -35.05317 -32.66389 -31.91200 -31.16292 -29.83625 -28.74520 -26.45191 -23.66072 -23.33341 -21.27369 -20.50884 -19.58761 -17.92118 -17.28587 -16.27233 -15.65400 -15.63119 -15.33541 -14.86719 -14.24472 -13.98654 -13.30452 -13.12121 -12.96284 -12.84151 -12.59084 -12.10760 -11.67756 -11.53126 -11.35094 -11.27520 -11.27140 -10.80685 -10.62952 -10.52130 -10.34138 -10.30509 -9.23702 -9.08156 -8.79440 -8.07871 -7.64953 -7.03073 -6.34349 -4.88354 1.21405 1.67257 2.99484 3.09732 3.13476 3.18322 3.61457 3.84565 4.13149 4.16832 4.51606 4.92145 4.99850 5.21284 5.31322 5.35725 5.42113 5.61306 5.62493 5.73799 5.85169 5.91672 6.07898 6.21332 6.37021 6.38739 6.59340 6.63806 6.79974 6.87405 7.02953 7.25674 7.89541 7.92180 8.06137 8.81331 8.85310 9.40017 10.44667 10.74551 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030365 B = 0.004835 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.900249 B = 5790.012483 C = 6691.461917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 O -0.263 6.263 4 C 0.153 3.847 5 C -0.218 4.218 6 C -0.085 4.085 7 C -0.167 4.167 8 C -0.071 4.071 9 C -0.056 4.056 10 C 0.006 3.994 11 N -0.156 5.156 12 N -0.593 5.593 13 C 0.559 3.441 14 O -0.547 6.547 15 C -0.538 4.538 16 H 0.069 0.931 17 C 0.089 3.911 18 N -0.746 5.746 19 Si 0.914 3.086 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.274 1.274 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.365 0.635 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.426 -5.102 0.020 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.173 6.173 4 C 0.103 3.897 5 C -0.237 4.237 6 C -0.104 4.104 7 C -0.185 4.185 8 C -0.092 4.092 9 C -0.059 4.059 10 C -0.202 4.202 11 N 0.033 4.967 12 N -0.339 5.339 13 C 0.367 3.633 14 O -0.425 6.425 15 C -0.575 4.575 16 H 0.088 0.912 17 C -0.134 4.134 18 N -0.373 5.373 19 Si 0.738 3.262 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.122 0.878 33 H 0.200 0.800 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.777 -6.427 0.025 13.417 hybrid contribution 0.387 1.696 -0.007 1.740 sum 12.164 -4.731 0.018 13.052 Atomic orbital electron populations 1.21658 0.91986 1.01263 1.05345 1.22793 0.96822 0.82478 0.99898 1.86566 1.16964 1.27643 1.86130 1.19411 0.83697 0.93049 0.93562 1.21177 0.94329 0.97933 1.10252 1.20948 0.94140 0.97113 0.98202 1.20811 0.99393 0.92323 1.05969 1.20988 0.90855 0.99088 0.98266 1.17941 0.92113 0.89281 1.06536 1.23793 0.91093 0.95904 1.09423 1.75169 1.03084 1.15774 1.02670 1.48180 1.06924 1.02711 1.76037 1.16769 0.77081 0.91153 0.78327 1.90711 1.72608 1.25935 1.53275 1.19803 0.91045 0.93104 1.53560 0.91243 1.25736 0.98534 0.96662 0.92449 1.70023 1.12813 1.22193 1.32292 0.86204 0.79883 0.81648 0.78423 1.18576 1.19902 1.19907 0.91574 0.90915 0.90906 0.92946 0.92946 0.85714 0.86361 0.86185 0.85373 0.87846 0.79992 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.28 37.16 0.38 -2.13 16 2 C 0.06 0.89 5.46 37.16 0.20 1.09 16 3 O -0.26 -5.31 8.01 -18.71 -0.15 -5.46 16 4 C 0.15 2.67 6.71 -38.53 -0.26 2.41 16 5 C -0.22 -3.05 9.03 -39.49 -0.36 -3.41 16 6 C -0.08 -1.00 10.04 -39.43 -0.40 -1.40 16 7 C -0.17 -1.92 10.02 -39.62 -0.40 -2.32 16 8 C -0.07 -0.93 9.80 -39.09 -0.38 -1.31 16 9 C -0.06 -0.94 5.89 -104.83 -0.62 -1.56 16 10 C 0.01 0.12 10.76 -14.62 -0.16 -0.04 16 11 N -0.16 -3.72 8.93 32.12 0.29 -3.43 16 12 N -0.59 -14.74 6.26 28.94 0.18 -14.55 16 13 C 0.56 16.51 7.66 -15.31 -0.12 16.40 16 14 O -0.55 -18.17 15.20 4.94 0.08 -18.10 16 15 C -0.54 -15.12 9.26 -37.89 -0.35 -15.47 16 16 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 17 C 0.09 2.44 5.50 -17.34 -0.10 2.35 16 18 N -0.75 -21.87 11.71 55.56 0.65 -21.22 16 19 Si 0.91 19.58 29.56 -169.99 -5.02 14.56 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 26 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 27 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 28 H 0.12 1.50 6.30 -52.49 -0.33 1.17 16 29 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.10 1.62 8.03 -52.49 -0.42 1.20 16 33 H 0.36 7.69 8.61 -182.60 -1.57 6.12 16 34 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 LS Contribution 304.40 15.07 4.59 4.59 Total: -1.00 -35.58 304.40 -7.14 -42.72 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.20 Total: 6.26 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.54 Total: -5.37 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 1.12 Total: -39.20 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.07 Total: -23.55 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.58 -7.14 -42.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725392392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.360 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds