Wall clock time and date at job start Mon Mar 30 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.35668 * 116.99865 * 179.97438 * 3 2 1 5 5 C 1.38554 * 120.17249 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.12018 * 179.97438 * 5 4 3 7 7 C 1.38720 * 120.47743 * 0.02562 * 6 5 4 8 8 C 1.37653 * 120.34427 * 0.02562 * 7 6 5 9 9 C 1.40131 * 119.86727 * 359.70023 * 8 7 6 10 10 C 1.46719 * 120.23149 * 180.29770 * 9 8 7 11 11 N 1.30687 * 119.99829 * 180.27718 * 10 9 8 12 12 N 1.40102 * 119.99965 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99953 * 179.97438 * 12 11 10 14 14 O 1.21974 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.40754 * 120.00025 * 180.02562 * 13 12 11 16 16 H 1.07998 * 119.99788 * 359.97438 * 15 13 12 17 17 C 1.40213 * 120.00058 * 180.02562 * 15 13 12 18 18 N 1.30593 * 119.99814 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99790 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.47498 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47503 * 120.00161 * 19 17 15 22 22 H 1.48508 * 109.46855 * 239.99786 * 19 17 15 23 23 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 25 25 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 26 26 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 27 27 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 28 28 H 1.07995 * 119.94453 * 359.94742 * 5 4 3 29 29 H 1.08006 * 119.76295 * 179.97438 * 6 5 4 30 30 H 1.07997 * 119.82511 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.06287 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.99995 * 0.27136 * 10 9 8 33 33 H 0.96996 * 120.00138 * 359.97438 * 12 11 10 34 34 H 0.97003 * 119.99680 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 4.1987 0.4288 0.0005 6 6 5.5683 0.6111 0.0005 7 6 6.1081 1.8890 0.0011 8 6 5.2843 2.9918 0.0022 9 6 3.8931 2.8237 -0.0036 10 6 3.0077 3.9935 -0.0091 11 7 1.7109 3.8315 -0.0091 12 7 0.8653 4.9486 -0.0148 13 6 -0.4720 4.7814 -0.0153 14 8 -0.9462 3.6576 -0.0112 15 6 -1.3215 5.9037 -0.0216 16 1 -0.9016 6.8987 -0.0257 17 6 -2.7128 5.7298 -0.0216 18 7 -3.2205 4.5266 -0.0161 19 14 -3.8401 7.2193 -0.0307 20 1 -3.0226 8.4589 -0.0366 21 1 -4.6963 7.1847 -1.2435 22 1 -4.6979 7.1982 1.1814 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.7879 -0.5700 0.0009 29 1 6.2235 -0.2476 0.0009 30 1 7.1802 2.0192 0.0015 31 1 5.7094 3.9846 0.0030 32 1 3.4275 4.9885 -0.0131 33 1 1.2424 5.8422 -0.0185 34 1 -4.1830 4.4064 -0.0165 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725392392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:56 Heat of formation + Delta-G solvation = -32.304748 kcal Electronic energy + Delta-G solvation = -19011.945941 eV Core-core repulsion = 15910.349946 eV Total energy + Delta-G solvation = -3101.595994 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99048 -39.46962 -38.32491 -36.82042 -34.70412 -33.48469 -32.51210 -31.21700 -30.13460 -28.41326 -24.90716 -24.74004 -22.56549 -22.06530 -21.27301 -19.55680 -18.77494 -17.83525 -17.60764 -16.95104 -16.60564 -16.14373 -15.81602 -15.27833 -15.09838 -14.65887 -14.36483 -14.29248 -14.18040 -13.36234 -13.26643 -13.22076 -12.85619 -12.72224 -12.62819 -12.48852 -12.34146 -11.98876 -11.74564 -11.59802 -11.00797 -10.76517 -10.25373 -9.88367 -9.34770 -8.62763 -8.39769 -7.05951 0.04013 0.60754 1.37166 1.38214 1.57831 1.66613 2.11202 2.37797 2.46117 2.48461 3.01831 3.70082 3.75423 3.92768 4.03443 4.11934 4.25192 4.32390 4.40598 4.48840 4.61769 4.69022 4.88073 4.90565 5.05349 5.14979 5.20126 5.29313 5.50456 5.57641 5.65408 5.84711 6.00223 6.06885 6.69230 6.70339 7.06396 7.53063 8.45118 8.65485 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030365 B = 0.004835 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.900249 B = 5790.012483 C = 6691.461917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 O -0.310 6.310 4 C 0.124 3.876 5 C -0.226 4.226 6 C -0.068 4.068 7 C -0.161 4.161 8 C -0.055 4.055 9 C -0.107 4.107 10 C 0.050 3.950 11 N -0.232 5.232 12 N -0.602 5.602 13 C 0.544 3.456 14 O -0.604 6.604 15 C -0.565 4.565 16 H 0.091 0.909 17 C 0.031 3.969 18 N -0.801 5.801 19 Si 1.008 2.992 20 H -0.245 1.245 21 H -0.265 1.265 22 H -0.265 1.265 23 H 0.108 0.892 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.136 0.864 33 H 0.378 0.622 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.656 -4.707 0.017 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.021 4.021 3 O -0.222 6.222 4 C 0.075 3.925 5 C -0.244 4.244 6 C -0.087 4.087 7 C -0.179 4.179 8 C -0.075 4.075 9 C -0.110 4.110 10 C -0.159 4.159 11 N -0.040 5.040 12 N -0.347 5.347 13 C 0.353 3.647 14 O -0.488 6.488 15 C -0.601 4.601 16 H 0.109 0.891 17 C -0.187 4.187 18 N -0.429 5.429 19 Si 0.826 3.174 20 H -0.168 1.168 21 H -0.190 1.190 22 H -0.190 1.190 23 H 0.126 0.874 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.175 0.825 30 H 0.179 0.821 31 H 0.177 0.823 32 H 0.153 0.847 33 H 0.215 0.785 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.078 -6.015 0.022 16.233 hybrid contribution -0.182 1.401 -0.005 1.413 sum 14.896 -4.613 0.018 15.594 Atomic orbital electron populations 1.21619 0.93830 1.02672 1.01420 1.22922 0.95309 0.81800 1.02088 1.86523 1.19101 1.29620 1.86913 1.19875 0.83152 0.94631 0.94803 1.21443 0.95170 0.97661 1.10175 1.21500 0.93482 0.98890 0.94805 1.21339 1.01276 0.91490 1.03798 1.21399 0.88989 1.01438 0.95679 1.18286 0.93577 0.88467 1.10659 1.24581 0.90193 0.98456 1.02661 1.75321 1.04952 1.15211 1.08541 1.47478 1.06176 1.03810 1.77233 1.17189 0.78790 0.90890 0.77872 1.90652 1.74365 1.27759 1.56056 1.20338 0.92110 0.93673 1.54001 0.89102 1.27104 1.00185 1.00544 0.90861 1.70191 1.13761 1.25621 1.33292 0.84826 0.76975 0.76741 0.78825 1.16761 1.18953 1.18958 0.87383 0.94756 0.94775 0.90540 0.90524 0.84088 0.82503 0.82110 0.82345 0.84703 0.78471 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 10.28 71.98 0.74 -4.44 16 2 C 0.05 1.76 5.46 71.98 0.39 2.16 16 3 O -0.31 -13.18 8.01 -89.85 -0.72 -13.90 16 4 C 0.12 4.33 6.71 22.95 0.15 4.48 16 5 C -0.23 -5.75 9.03 22.33 0.20 -5.54 16 6 C -0.07 -1.27 10.04 22.37 0.22 -1.05 16 7 C -0.16 -2.83 10.02 22.25 0.22 -2.61 16 8 C -0.05 -1.21 9.80 22.59 0.22 -0.99 16 9 C -0.11 -3.50 5.89 -20.00 -0.12 -3.62 16 10 C 0.05 1.92 10.76 87.08 0.94 2.86 16 11 N -0.23 -11.68 8.93 -52.28 -0.47 -12.15 16 12 N -0.60 -31.69 6.26 -180.47 -1.13 -32.82 16 13 C 0.54 34.32 7.66 84.86 0.65 34.97 16 14 O -0.60 -43.57 15.20 -5.23 -0.08 -43.65 16 15 C -0.56 -33.02 9.26 23.37 0.22 -32.81 16 16 H 0.09 4.70 7.85 -2.91 -0.02 4.67 16 17 C 0.03 1.76 5.50 85.36 0.47 2.23 16 18 N -0.80 -49.50 11.71 21.86 0.26 -49.24 16 19 Si 1.01 40.71 29.56 68.60 2.03 42.74 16 20 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 24 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 2.08 7.66 -2.38 -0.02 2.07 16 27 H 0.08 2.09 7.66 -2.39 -0.02 2.07 16 28 H 0.14 3.01 6.30 -2.91 -0.02 2.99 16 29 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.14 4.04 8.03 -2.91 -0.02 4.02 16 33 H 0.38 16.66 8.61 -213.32 -1.84 14.82 16 34 H 0.28 15.42 8.29 -92.71 -0.77 14.65 16 Total: -1.00 -87.29 304.40 3.48 -83.81 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.72 Total: 29.59 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 4.31 Total: -4.36 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -1.34 Total: -94.22 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -0.80 Total: -57.55 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -87.29 3.48 -83.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725392392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.500 kcal (2) G-P(sol) polarization free energy of solvation -87.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds