Wall clock time and date at job start Mon Mar 30 2020 05:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47785 * 2 1 4 4 C 1.50703 * 109.46903 * 239.99724 * 2 1 3 5 5 H 1.07999 * 119.99912 * 240.00126 * 4 2 1 6 6 C 1.37872 * 119.99969 * 60.00451 * 4 2 1 7 7 N 1.31506 * 120.00074 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99879 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46962 * 60.00350 * 8 6 4 10 10 H 1.48498 * 109.47024 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47225 * 300.00035 * 8 6 4 12 12 N 1.46499 * 109.47235 * 120.00082 * 2 1 3 13 13 N 1.40107 * 120.00106 * 269.99876 * 12 2 1 14 14 C 1.29929 * 120.00213 * 179.97438 * 13 12 2 15 15 C 1.47087 * 119.99875 * 180.02562 * 14 13 12 16 16 C 1.39651 * 120.25271 * 354.35446 * 15 14 13 17 17 C 1.37849 * 119.99079 * 179.97438 * 16 15 14 18 18 C 1.38656 * 120.50160 * 359.97438 * 17 16 15 19 19 C 1.37850 * 120.50545 * 0.02562 * 18 17 16 20 20 C 1.39620 * 119.99659 * 0.02562 * 19 18 17 21 21 C 1.47316 * 120.24502 * 179.97438 * 20 19 18 22 22 O 1.21517 * 119.99499 * 185.98244 * 21 20 19 23 23 O 1.34771 * 120.00110 * 5.97977 * 21 20 19 24 24 H 1.09001 * 109.46751 * 300.00039 * 1 2 3 25 25 H 1.08998 * 109.46955 * 59.99872 * 1 2 3 26 26 H 1.08997 * 109.47323 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00441 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00489 * 89.99075 * 12 2 1 29 29 H 1.08004 * 119.99876 * 0.02562 * 14 13 12 30 30 H 1.08003 * 120.00520 * 359.96062 * 16 15 14 31 31 H 1.08007 * 119.75115 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.74887 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.00460 * 179.71977 * 19 18 17 34 34 H 0.96702 * 116.99984 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8269 -0.4201 -5.2204 11 1 3.8075 -1.1193 -4.0077 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0299 2.3748 14 6 2.6846 -0.5826 3.4358 15 6 2.9292 0.1738 4.6734 16 6 2.8118 1.5653 4.6823 17 6 3.0418 2.2688 5.8452 18 6 3.3896 1.6053 7.0120 19 6 3.5113 0.2322 7.0265 20 6 3.2842 -0.5010 5.8602 21 6 3.4132 -1.9685 5.8694 22 8 3.3219 -2.5928 4.8309 23 8 3.6325 -2.6184 7.0295 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7082 1.1608 -3.4844 28 1 2.1799 -1.6468 1.1722 29 1 2.8646 -1.6473 3.4091 30 1 2.5411 2.0903 3.7781 31 1 2.9495 3.3449 5.8478 32 1 3.5667 2.1685 7.9163 33 1 3.7871 -0.2759 7.9387 34 1 3.7105 -3.5813 6.9853 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:30 Heat of formation + Delta-G solvation = -19.168737 kcal Electronic energy + Delta-G solvation = -18520.710562 eV Core-core repulsion = 15419.684188 eV Total energy + Delta-G solvation = -3101.026374 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46444 -38.57127 -36.48224 -36.05534 -34.08345 -31.96459 -31.40053 -30.22752 -27.19428 -25.26896 -24.61283 -23.34611 -21.43028 -20.40238 -20.01591 -18.12952 -17.47771 -16.69092 -16.10026 -15.68099 -15.62058 -14.96956 -14.47847 -14.31278 -13.84870 -13.27375 -13.05025 -12.94630 -12.52904 -12.28451 -11.87382 -11.61114 -11.47308 -11.23798 -11.01838 -10.87994 -10.72633 -10.60435 -10.24686 -10.22274 -9.19091 -9.10119 -9.04103 -8.88391 -8.50615 -6.82786 -6.14811 -4.23239 0.59598 1.22537 2.56939 2.98437 3.03478 3.25977 3.30270 3.32251 3.74839 4.02559 4.35805 4.80111 4.93839 4.97870 5.16684 5.18323 5.40395 5.51163 5.78084 6.01240 6.08111 6.21388 6.36224 6.47064 6.71158 6.77119 6.87327 6.97183 6.98576 7.12561 7.55812 7.75334 7.83780 7.89892 8.12525 8.27828 8.83609 9.27703 9.43546 10.91061 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.004054 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.908524 B = 6905.929610 C = 7557.997153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.294 3.706 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.611 5.611 13 N -0.184 5.184 14 C -0.055 4.055 15 C 0.070 3.930 16 C -0.120 4.120 17 C -0.078 4.078 18 C -0.152 4.152 19 C -0.058 4.058 20 C -0.140 4.140 21 C 0.529 3.471 22 O -0.506 6.506 23 O -0.516 6.516 24 H 0.013 0.987 25 H 0.091 0.909 26 H 0.026 0.974 27 H 0.265 0.735 28 H 0.371 0.629 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -0.828 18.985 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.192 3.808 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.347 5.347 13 N 0.000 5.000 14 C -0.260 4.260 15 C 0.067 3.933 16 C -0.140 4.140 17 C -0.097 4.097 18 C -0.171 4.171 19 C -0.076 4.076 20 C -0.144 4.144 21 C 0.375 3.625 22 O -0.396 6.396 23 O -0.328 6.328 24 H 0.032 0.968 25 H 0.109 0.891 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.208 0.792 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.758 0.508 17.958 18.354 hybrid contribution 0.573 -2.279 -0.717 2.457 sum 4.331 -1.770 17.241 17.864 Atomic orbital electron populations 1.22205 0.98830 0.99322 1.00598 1.18603 0.90281 0.93621 0.78251 0.93894 1.21198 1.32382 1.13363 0.90164 0.92166 1.24847 0.94773 0.94983 0.98935 1.69874 1.35938 1.22524 1.24060 0.86468 0.79207 0.79614 0.81603 1.20145 1.21052 1.20145 1.49212 1.70720 1.08108 1.06666 1.73908 1.03312 1.28467 0.94287 1.24447 1.10021 1.00149 0.91334 1.18492 0.91975 0.92555 0.90268 1.21444 1.00481 0.92799 0.99256 1.21371 0.95548 1.00299 0.92446 1.21082 1.03332 0.94122 0.98593 1.21257 0.95551 0.94116 0.96677 1.18883 1.11654 0.88736 0.95122 1.20888 0.72197 0.88850 0.80569 1.90733 1.47134 1.68993 1.32719 1.84569 1.84443 1.27560 1.36262 0.96823 0.89052 0.95442 0.92479 0.79234 0.83490 0.84038 0.85435 0.85562 0.84764 0.73029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.29 37.16 0.35 -3.40 16 2 C 0.29 7.63 3.23 -69.08 -0.22 7.41 16 3 H 0.04 1.22 8.14 -51.93 -0.42 0.80 16 4 C -0.53 -14.50 8.74 -34.44 -0.30 -14.80 16 5 H 0.06 1.61 7.79 -52.49 -0.41 1.21 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.61 -14.16 6.10 -5.88 -0.04 -14.20 16 13 N -0.18 -3.94 10.63 32.09 0.34 -3.60 16 14 C -0.06 -1.04 10.09 -14.77 -0.15 -1.19 16 15 C 0.07 1.11 5.90 -104.71 -0.62 0.50 16 16 C -0.12 -1.70 9.57 -39.20 -0.37 -2.07 16 17 C -0.08 -0.85 10.02 -39.57 -0.40 -1.25 16 18 C -0.15 -1.47 10.02 -39.57 -0.40 -1.87 16 19 C -0.06 -0.62 9.60 -39.21 -0.38 -0.99 16 20 C -0.14 -1.90 5.91 -104.62 -0.62 -2.52 16 21 C 0.53 7.04 8.22 34.42 0.28 7.33 16 22 O -0.51 -8.26 14.00 -19.28 -0.27 -8.53 16 23 O -0.52 -4.79 12.70 -40.69 -0.52 -5.31 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.37 8.21 8.58 -182.59 -1.57 6.64 16 29 H 0.15 2.88 4.81 -52.89 -0.25 2.62 16 30 H 0.14 2.13 7.56 -52.48 -0.40 1.74 16 31 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 1.13 7.62 -52.48 -0.40 0.73 16 34 H 0.41 2.00 9.11 45.56 0.42 2.42 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -30.87 301.90 -7.42 -38.29 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.18 Total: 8.11 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.92 Total: -11.12 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.93 Total: -41.92 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.79 Total: -13.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.87 -7.42 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.118 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds