Wall clock time and date at job start Mon Mar 30 2020 05:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47785 * 2 1 4 4 C 1.50703 * 109.46903 * 239.99724 * 2 1 3 5 5 H 1.07999 * 119.99912 * 240.00126 * 4 2 1 6 6 C 1.37872 * 119.99969 * 60.00451 * 4 2 1 7 7 N 1.31506 * 120.00074 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99879 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46962 * 60.00350 * 8 6 4 10 10 H 1.48498 * 109.47024 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47225 * 300.00035 * 8 6 4 12 12 N 1.46499 * 109.47235 * 120.00082 * 2 1 3 13 13 N 1.40107 * 120.00106 * 269.99876 * 12 2 1 14 14 C 1.29929 * 120.00213 * 179.97438 * 13 12 2 15 15 C 1.47087 * 119.99875 * 180.02562 * 14 13 12 16 16 C 1.39651 * 120.25271 * 354.35446 * 15 14 13 17 17 C 1.37849 * 119.99079 * 179.97438 * 16 15 14 18 18 C 1.38656 * 120.50160 * 359.97438 * 17 16 15 19 19 C 1.37850 * 120.50545 * 0.02562 * 18 17 16 20 20 C 1.39620 * 119.99659 * 0.02562 * 19 18 17 21 21 C 1.47316 * 120.24502 * 179.97438 * 20 19 18 22 22 O 1.21517 * 119.99499 * 185.98244 * 21 20 19 23 23 O 1.34771 * 120.00110 * 5.97977 * 21 20 19 24 24 H 1.09001 * 109.46751 * 300.00039 * 1 2 3 25 25 H 1.08998 * 109.46955 * 59.99872 * 1 2 3 26 26 H 1.08997 * 109.47323 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00441 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00489 * 89.99075 * 12 2 1 29 29 H 1.08004 * 119.99876 * 0.02562 * 14 13 12 30 30 H 1.08003 * 120.00520 * 359.96062 * 16 15 14 31 31 H 1.08007 * 119.75115 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.74887 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.00460 * 179.71977 * 19 18 17 34 34 H 0.96702 * 116.99984 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8269 -0.4201 -5.2204 11 1 3.8075 -1.1193 -4.0077 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0299 2.3748 14 6 2.6846 -0.5826 3.4358 15 6 2.9292 0.1738 4.6734 16 6 2.8118 1.5653 4.6823 17 6 3.0418 2.2688 5.8452 18 6 3.3896 1.6053 7.0120 19 6 3.5113 0.2322 7.0265 20 6 3.2842 -0.5010 5.8602 21 6 3.4132 -1.9685 5.8694 22 8 3.3219 -2.5928 4.8309 23 8 3.6325 -2.6184 7.0295 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7082 1.1608 -3.4844 28 1 2.1799 -1.6468 1.1722 29 1 2.8646 -1.6473 3.4091 30 1 2.5411 2.0903 3.7781 31 1 2.9495 3.3449 5.8478 32 1 3.5667 2.1685 7.9163 33 1 3.7871 -0.2759 7.9387 34 1 3.7105 -3.5813 6.9853 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:30 Heat of formation + Delta-G solvation = -40.085355 kcal Electronic energy + Delta-G solvation = -18521.617574 eV Core-core repulsion = 15419.684188 eV Total energy + Delta-G solvation = -3101.933387 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49016 -39.57693 -38.05133 -37.12264 -35.88007 -33.61856 -32.40324 -31.70277 -28.83537 -27.33497 -25.73623 -24.49199 -22.73894 -21.95627 -21.40996 -19.08845 -18.99023 -18.08207 -17.48380 -17.13849 -16.71011 -16.63770 -15.62304 -15.43330 -15.29775 -14.58867 -14.50978 -14.30537 -14.06970 -13.78659 -13.30337 -12.96104 -12.83221 -12.74042 -12.56931 -12.49357 -12.25049 -12.16986 -12.06571 -11.91134 -11.14674 -10.62406 -10.52458 -10.10893 -10.01375 -8.48918 -8.20111 -6.37863 -0.45783 0.21703 1.41072 1.43245 1.51182 1.57571 1.69428 2.06424 2.13107 2.44094 2.95255 3.08186 3.85022 3.85950 4.13543 4.15546 4.41850 4.54694 4.65062 4.75225 4.87627 4.95091 5.01958 5.07688 5.18296 5.36365 5.43982 5.53233 5.56348 5.69745 5.75024 5.84365 5.94386 6.13564 6.35892 6.79169 7.00877 7.33318 7.64645 8.84585 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028596 B = 0.004054 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.908524 B = 6905.929610 C = 7557.997153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.305 3.695 3 H 0.005 0.995 4 C -0.553 4.553 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.273 1.273 12 N -0.636 5.636 13 N -0.227 5.227 14 C -0.018 4.018 15 C 0.024 3.976 16 C -0.130 4.130 17 C -0.073 4.073 18 C -0.127 4.127 19 C -0.050 4.050 20 C -0.144 4.144 21 C 0.533 3.467 22 O -0.546 6.546 23 O -0.498 6.498 24 H 0.018 0.982 25 H 0.072 0.928 26 H 0.028 0.972 27 H 0.268 0.732 28 H 0.371 0.629 29 H 0.142 0.858 30 H 0.121 0.879 31 H 0.159 0.841 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -0.718 22.060 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.202 3.798 3 H 0.023 0.977 4 C -0.592 4.592 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.194 1.194 10 H -0.202 1.202 11 H -0.199 1.199 12 N -0.372 5.372 13 N -0.039 5.039 14 C -0.226 4.226 15 C 0.021 3.979 16 C -0.151 4.151 17 C -0.091 4.091 18 C -0.146 4.146 19 C -0.068 4.068 20 C -0.148 4.148 21 C 0.380 3.620 22 O -0.439 6.439 23 O -0.311 6.311 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.207 0.793 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.176 0.824 32 H 0.189 0.811 33 H 0.184 0.816 34 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 4.838 0.613 21.077 21.634 hybrid contribution 0.351 -2.270 -1.221 2.602 sum 5.190 -1.658 19.856 20.590 Atomic orbital electron populations 1.22017 0.98570 0.99051 0.99825 1.18198 0.90442 0.91735 0.79433 0.97663 1.21472 1.32836 1.13604 0.91248 0.92394 1.25690 0.94767 0.95620 1.01806 1.69993 1.36586 1.23581 1.24865 0.85418 0.78568 0.78639 0.77823 1.19406 1.20233 1.19857 1.48733 1.73717 1.07747 1.06989 1.73955 1.06911 1.28530 0.94464 1.24955 1.05499 1.00366 0.91766 1.18525 0.96076 0.93398 0.89898 1.21438 1.01144 0.92345 1.00176 1.21734 0.94042 1.01837 0.91465 1.21640 0.99634 0.93894 0.99398 1.21673 0.94005 0.94685 0.96406 1.19070 1.11146 0.89230 0.95310 1.20929 0.71287 0.88973 0.80818 1.90719 1.49064 1.69747 1.34342 1.84504 1.83367 1.29446 1.33831 0.96271 0.90893 0.95285 0.92237 0.79265 0.84179 0.86115 0.82378 0.81084 0.81582 0.70544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.09 9.29 71.98 0.67 -6.43 16 2 C 0.31 16.80 3.23 44.25 0.14 16.94 16 3 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 4 C -0.55 -31.38 8.74 25.60 0.22 -31.15 16 5 H 0.06 3.23 7.79 -2.91 -0.02 3.20 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -52.45 11.32 21.44 0.24 -52.20 16 8 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 N -0.64 -31.44 6.10 -172.52 -1.05 -32.49 16 13 N -0.23 -10.36 10.63 -52.38 -0.56 -10.92 16 14 C -0.02 -0.72 10.09 87.30 0.88 0.16 16 15 C 0.02 0.75 5.90 -19.92 -0.12 0.63 16 16 C -0.13 -3.64 9.57 22.52 0.22 -3.42 16 17 C -0.07 -1.34 10.02 22.28 0.22 -1.11 16 18 C -0.13 -1.76 10.02 22.28 0.22 -1.54 16 19 C -0.05 -0.83 9.60 22.51 0.22 -0.61 16 20 C -0.14 -3.61 5.91 -19.86 -0.12 -3.73 16 21 C 0.53 13.33 8.22 70.21 0.58 13.91 16 22 O -0.55 -17.86 14.00 19.78 0.28 -17.58 16 23 O -0.50 -7.64 12.70 -56.82 -0.72 -8.36 16 24 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 4.06 6.07 -2.39 -0.01 4.05 16 26 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.37 17.57 8.58 -213.31 -1.83 15.74 16 29 H 0.14 5.77 4.81 -9.26 -0.04 5.72 16 30 H 0.12 3.82 7.56 -2.91 -0.02 3.80 16 31 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.17 1.77 7.62 -2.91 -0.02 1.75 16 34 H 0.43 2.90 9.11 -74.06 -0.67 2.22 16 Total: -1.00 -70.94 301.90 2.41 -68.53 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -1.39 Total: 22.08 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 3.59 Total: -14.69 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -1.37 Total: -95.61 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.44 Total: -25.94 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.94 2.41 -68.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.445 kcal (2) G-P(sol) polarization free energy of solvation -70.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds