Wall clock time and date at job start Mon Mar 30 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47601 * 2 1 4 4 C 1.50705 * 109.47103 * 119.99756 * 2 1 3 5 5 H 1.07999 * 119.99504 * 120.00002 * 4 2 1 6 6 C 1.37869 * 120.00011 * 300.00507 * 4 2 1 7 7 N 1.31509 * 120.00265 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00051 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47419 * 59.99350 * 8 6 4 10 10 H 1.48499 * 109.47514 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46791 * 299.99448 * 8 6 4 12 12 N 1.46497 * 109.47484 * 239.99851 * 2 1 3 13 13 N 1.40098 * 119.99910 * 89.72504 * 12 2 1 14 14 C 1.29937 * 120.00210 * 180.27896 * 13 12 2 15 15 C 1.47094 * 119.99974 * 179.97438 * 14 13 12 16 16 C 1.39647 * 120.25298 * 354.36806 * 15 14 13 17 17 C 1.37856 * 119.99149 * 179.97438 * 16 15 14 18 18 C 1.38655 * 120.49773 * 0.02750 * 17 16 15 19 19 C 1.37857 * 120.50637 * 359.97438 * 18 17 16 20 20 C 1.39611 * 119.99743 * 359.71704 * 19 18 17 21 21 C 1.47312 * 120.25036 * 180.27760 * 20 19 18 22 22 O 1.21523 * 120.00216 * 186.01563 * 21 20 19 23 23 O 1.34780 * 119.99754 * 6.02033 * 21 20 19 24 24 H 1.09002 * 109.47326 * 60.00292 * 1 2 3 25 25 H 1.09003 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47295 * 299.99775 * 1 2 3 27 27 H 0.97002 * 120.00290 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00325 * 270.00241 * 12 2 1 29 29 H 1.08000 * 119.99753 * 359.97438 * 14 13 12 30 30 H 1.08004 * 120.00820 * 359.97438 * 16 15 14 31 31 H 1.07994 * 119.75356 * 180.02562 * 17 16 15 32 32 H 1.07995 * 119.74364 * 179.97438 * 18 17 16 33 33 H 1.07996 * 120.00221 * 180.02562 * 19 18 17 34 34 H 0.96700 * 117.00233 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8073 -1.1189 4.0078 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0184 -0.6906 -1.1961 13 7 2.2464 0.0289 -2.3764 14 6 2.6744 -0.5845 -3.4388 15 6 2.9133 0.1709 -4.6782 16 6 2.5717 1.5228 -4.7551 17 6 2.7985 2.2257 -5.9191 18 6 3.3645 1.6006 -7.0197 19 6 3.7095 0.2670 -6.9664 20 6 3.4951 -0.4632 -5.7960 21 6 3.8673 -1.8871 -5.7309 22 8 3.5800 -2.5461 -4.7512 23 8 4.5266 -2.4588 -6.7580 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7087 1.1613 3.4844 28 1 2.1800 -1.6467 -1.1721 29 1 2.8548 -1.6490 -3.4120 30 1 2.1300 2.0176 -3.9027 31 1 2.5332 3.2711 -5.9742 32 1 3.5364 2.1629 -7.9256 33 1 4.1503 -0.2116 -7.8284 34 1 4.7492 -3.3957 -6.6698 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771886162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:33 Heat of formation + Delta-G solvation = -40.103008 kcal Electronic energy + Delta-G solvation = -18522.599720 eV Core-core repulsion = 15420.665568 eV Total energy + Delta-G solvation = -3101.934152 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48889 -39.57596 -38.05193 -37.12219 -35.87931 -33.61837 -32.40328 -31.70237 -28.83409 -27.33506 -25.73653 -24.49229 -22.73719 -21.95731 -21.41069 -19.08861 -18.99116 -18.08142 -17.48350 -17.13847 -16.70491 -16.64132 -15.61841 -15.43466 -15.29569 -14.61727 -14.49952 -14.31572 -14.03169 -13.80208 -13.30267 -12.96348 -12.83350 -12.73320 -12.56884 -12.49648 -12.25487 -12.16105 -12.06939 -11.91016 -11.15174 -10.61924 -10.52239 -10.11185 -10.01342 -8.48744 -8.20264 -6.37909 -0.45774 0.21721 1.40966 1.43145 1.51072 1.57552 1.69388 2.06477 2.13127 2.44055 2.95262 3.08144 3.85039 3.85942 4.13604 4.15528 4.41892 4.54713 4.65165 4.75298 4.87650 4.95275 5.02038 5.07707 5.18324 5.36422 5.44076 5.53207 5.56378 5.69740 5.75066 5.84433 5.94416 6.13589 6.35926 6.79120 7.00795 7.33268 7.64686 8.84524 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.004085 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.554617 B = 6852.629457 C = 7558.947853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.305 3.695 3 H 0.005 0.995 4 C -0.553 4.553 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.269 1.269 12 N -0.636 5.636 13 N -0.227 5.227 14 C -0.018 4.018 15 C 0.024 3.976 16 C -0.130 4.130 17 C -0.073 4.073 18 C -0.127 4.127 19 C -0.050 4.050 20 C -0.144 4.144 21 C 0.533 3.467 22 O -0.546 6.546 23 O -0.498 6.498 24 H 0.019 0.981 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.268 0.732 28 H 0.371 0.629 29 H 0.142 0.858 30 H 0.121 0.879 31 H 0.159 0.841 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 -0.589 -21.849 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.202 3.798 3 H 0.023 0.977 4 C -0.592 4.592 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.194 1.194 12 N -0.372 5.372 13 N -0.039 5.039 14 C -0.226 4.226 15 C 0.021 3.979 16 C -0.151 4.151 17 C -0.091 4.091 18 C -0.146 4.146 19 C -0.068 4.068 20 C -0.148 4.148 21 C 0.380 3.620 22 O -0.439 6.439 23 O -0.312 6.312 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.207 0.793 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.176 0.824 32 H 0.189 0.811 33 H 0.184 0.816 34 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 5.412 0.723 -20.896 21.598 hybrid contribution 0.424 -2.260 1.241 2.613 sum 5.836 -1.537 -19.655 20.560 Atomic orbital electron populations 1.22017 0.98533 0.99065 0.99849 1.18197 0.90462 0.91718 0.79434 0.97698 1.21470 1.32831 1.13605 0.91256 0.92408 1.25688 0.94771 0.95622 1.01806 1.69995 1.36616 1.23546 1.24864 0.85419 0.78555 0.78649 0.77826 1.19886 1.20224 1.19385 1.48730 1.73785 1.07793 1.06873 1.73955 1.06869 1.28559 0.94474 1.24958 1.05488 1.00385 0.91758 1.18529 0.95585 0.93575 0.90212 1.21439 1.01154 0.92676 0.99823 1.21735 0.94517 1.01336 0.91484 1.21641 0.98667 0.94361 0.99903 1.21670 0.94884 0.94400 0.95816 1.19068 1.08455 0.90709 0.96531 1.20936 0.73485 0.88190 0.79408 1.90720 1.53860 1.65437 1.33856 1.84505 1.69222 1.33920 1.43511 0.96213 0.95277 0.90905 0.92237 0.79265 0.84180 0.86086 0.82368 0.81087 0.81593 0.70549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.08 9.29 71.98 0.67 -6.41 16 2 C 0.31 16.80 3.23 44.25 0.14 16.94 16 3 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 4 C -0.55 -31.39 8.74 25.60 0.22 -31.17 16 5 H 0.06 3.22 7.79 -2.91 -0.02 3.20 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -52.45 11.32 21.44 0.24 -52.21 16 8 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 12 N -0.64 -31.43 6.10 -172.53 -1.05 -32.49 16 13 N -0.23 -10.36 10.63 -52.37 -0.56 -10.91 16 14 C -0.02 -0.72 10.09 87.30 0.88 0.16 16 15 C 0.02 0.75 5.90 -19.92 -0.12 0.63 16 16 C -0.13 -3.63 9.57 22.52 0.22 -3.41 16 17 C -0.07 -1.33 10.02 22.28 0.22 -1.11 16 18 C -0.13 -1.77 10.02 22.28 0.22 -1.54 16 19 C -0.05 -0.83 9.61 22.51 0.22 -0.62 16 20 C -0.14 -3.62 5.91 -19.86 -0.12 -3.73 16 21 C 0.53 13.37 8.22 70.21 0.58 13.95 16 22 O -0.55 -17.90 14.00 19.76 0.28 -17.62 16 23 O -0.50 -7.69 12.70 -56.91 -0.72 -8.41 16 24 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 4.05 6.07 -2.39 -0.01 4.04 16 27 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.37 17.57 8.58 -213.32 -1.83 15.74 16 29 H 0.14 5.77 4.81 -9.32 -0.04 5.72 16 30 H 0.12 3.82 7.56 -2.91 -0.02 3.79 16 31 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.17 1.78 7.62 -2.91 -0.02 1.76 16 34 H 0.43 2.94 9.11 -74.06 -0.67 2.27 16 Total: -1.00 -70.96 301.89 2.41 -68.55 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -1.39 Total: 22.10 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.59 Total: -14.66 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -1.37 Total: -95.61 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.45 Total: -26.03 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.96 2.41 -68.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.447 kcal (2) G-P(sol) polarization free energy of solvation -70.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds