Wall clock time and date at job start Mon Mar 30 2020 05:18:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 109.46949 * 2 1
4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3
5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1
6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3
13 13 N 1.40104 * 120.00312 * 89.99780 * 12 2 1
14 14 C 1.29746 * 120.00087 * 179.97438 * 13 12 2
15 15 C 1.47447 * 119.99851 * 179.97438 * 14 13 12
16 16 C 1.39740 * 120.14514 * 179.97438 * 15 14 13
17 17 C 1.37898 * 119.96573 * 179.97438 * 16 15 14
18 18 C 1.38398 * 120.32492 * 0.02868 * 17 16 15
19 19 C 1.38645 * 120.35982 * 359.97332 * 18 17 16
20 20 C 1.39060 * 119.92148 * 359.74672 * 19 18 17
21 21 O 1.36424 * 108.72166 * 179.80984 * 20 19 18
22 22 C 1.43995 * 105.54154 * 343.09923 * 21 20 19
23 23 O 1.36540 * 131.44534 * 179.97438 * 19 18 17
24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3
25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3
26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3
27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
28 28 H 0.97006 * 119.99969 * 270.00430 * 12 2 1
29 29 H 1.07997 * 120.00429 * 0.02562 * 14 13 12
30 30 H 1.08000 * 120.01786 * 0.02562 * 16 15 14
31 31 H 1.08005 * 119.83904 * 180.02562 * 17 16 15
32 32 H 1.07997 * 119.82480 * 179.97438 * 18 17 16
33 33 H 1.08991 * 110.58624 * 268.30776 * 22 21 20
34 34 H 1.09000 * 110.70253 * 145.47264 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2303
5 1 2.6532 -1.5886 1.1313
6 6 1.6992 -0.2395 2.4827
7 7 0.9435 0.8301 2.6034
8 14 2.3213 -1.1207 4.0078
9 1 1.8269 -0.4203 5.2204
10 1 1.8258 -2.5205 4.0075
11 1 3.8063 -1.1213 4.0080
12 7 2.0183 -0.6905 -1.1962
13 7 2.2518 0.0301 -2.3748
14 6 2.6848 -0.5814 -3.4341
15 6 2.9300 0.1770 -4.6746
16 6 3.3968 -0.4784 -5.8171
17 6 3.6243 0.2343 -6.9755
18 6 3.3932 1.5983 -7.0134
19 6 2.9300 2.2622 -5.8878
20 6 2.6908 1.5549 -4.7147
21 8 2.2495 2.4249 -3.7610
22 6 2.6008 3.7357 -4.2424
23 8 2.6307 3.5770 -5.6732
24 1 -0.3634 0.5138 0.8899
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 0.7089 1.1611 3.4845
28 1 2.1799 -1.6467 -1.1723
29 1 2.8648 -1.6459 -3.4075
30 1 3.5785 -1.5428 -5.7931
31 1 3.9847 -0.2744 -7.8574
32 1 3.5745 2.1487 -7.9248
33 1 3.5814 4.0308 -3.8694
34 1 1.8461 4.4673 -3.9537
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000771888959.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:27
Heat of formation + Delta-G solvation = 8.961500 kcal
Electronic energy + Delta-G solvation = -18893.879913 eV
Core-core repulsion = 15794.073358 eV
Total energy + Delta-G solvation = -3099.806555 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 262.110 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.91908 -37.87070 -36.43110 -35.91458 -34.01785 -31.81098 -30.14543 -29.77680
-27.07118 -25.62806 -25.23513 -23.42267 -22.65620 -20.60491 -20.10513 -17.89612
-17.49731 -17.32191 -16.36679 -16.14321 -15.53857 -15.00941 -14.42814 -14.28320
-13.83796 -13.40785 -13.24291 -13.00695 -12.67662 -12.51232 -12.31314 -12.08886
-11.49903 -11.24194 -11.01204 -10.94891 -10.79663 -10.53351 -10.24649 -10.22259
-9.50865 -9.06240 -8.79498 -8.49228 -7.94599 -6.80392 -6.14341 -4.22947
1.07134 1.29749 2.87590 3.06667 3.24816 3.29502 3.30961 3.64472
3.76586 3.94833 4.35242 4.59008 4.84056 4.96357 5.11303 5.17840
5.24930 5.29492 5.36151 5.53516 5.86289 6.12109 6.23969 6.35779
6.45167 6.54227 6.73443 6.95278 7.01137 7.15338 7.32406 7.56962
7.77384 7.85162 8.13516 8.28733 8.84038 9.31021 9.43692 10.91488
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.032365 B = 0.004276 C = 0.003960
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.929322 B = 6546.437270 C = 7068.730475
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.297 3.703
3 H 0.043 0.957
4 C -0.532 4.532
5 H 0.059 0.941
6 C 0.067 3.933
7 N -0.885 5.885
8 Si 0.903 3.097
9 H -0.285 1.285
10 H -0.276 1.276
11 H -0.276 1.276
12 N -0.618 5.618
13 N -0.170 5.170
14 C -0.030 4.030
15 C 0.013 3.987
16 C -0.107 4.107
17 C -0.112 4.112
18 C -0.114 4.114
19 C 0.027 3.973
20 C 0.052 3.948
21 O -0.277 6.277
22 C 0.208 3.792
23 O -0.315 6.315
24 H 0.090 0.910
25 H 0.013 0.987
26 H 0.025 0.975
27 H 0.265 0.735
28 H 0.368 0.632
29 H 0.107 0.893
30 H 0.137 0.863
31 H 0.135 0.865
32 H 0.129 0.871
33 H 0.080 0.920
34 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.596 0.883 -16.441 17.094
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.195 3.805
3 H 0.061 0.939
4 C -0.571 4.571
5 H 0.077 0.923
6 C -0.136 4.136
7 N -0.523 5.523
8 Si 0.731 3.269
9 H -0.211 1.211
10 H -0.202 1.202
11 H -0.202 1.202
12 N -0.355 5.355
13 N 0.016 4.984
14 C -0.237 4.237
15 C 0.009 3.991
16 C -0.127 4.127
17 C -0.130 4.130
18 C -0.134 4.134
19 C -0.017 4.017
20 C 0.005 3.995
21 O -0.191 6.191
22 C 0.096 3.904
23 O -0.232 6.232
24 H 0.109 0.891
25 H 0.032 0.968
26 H 0.044 0.956
27 H 0.075 0.925
28 H 0.204 0.796
29 H 0.124 0.876
30 H 0.155 0.845
31 H 0.153 0.847
32 H 0.147 0.853
33 H 0.098 0.902
34 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 3.988 2.149 -15.607 16.251
hybrid contribution 0.515 -1.433 0.852 1.745
sum 4.503 0.717 -14.755 15.443
Atomic orbital electron populations
1.22194 0.98928 0.99158 1.00603 1.18552 0.90203 0.93613 0.78136
0.93940 1.21195 1.32378 1.13316 0.90223 0.92254 1.24859 0.94807
0.94989 0.98932 1.69887 1.35928 1.22474 1.24018 0.86477 0.79169
0.79599 0.81677 1.21056 1.20158 1.20182 1.49177 1.71536 1.07806
1.06943 1.74149 1.02764 1.27637 0.93843 1.23324 1.11447 0.96829
0.92112 1.17552 0.99947 0.88124 0.93435 1.20908 1.00805 1.00047
0.90986 1.20697 1.01475 0.92523 0.98306 1.19993 1.02792 0.94270
0.96339 1.19794 1.02508 0.83478 0.95942 1.19838 0.99922 0.92365
0.87420 1.87621 1.75150 1.14696 1.41615 1.25655 1.02321 0.86970
0.75490 1.87325 1.86881 1.23895 1.25106 0.89148 0.96797 0.95564
0.92497 0.79586 0.87608 0.84535 0.84719 0.85292 0.90202 0.85392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.77 9.29 37.16 0.35 -3.43 16
2 C 0.30 7.73 3.23 -69.09 -0.22 7.51 16
3 H 0.04 1.24 8.14 -51.93 -0.42 0.81 16
4 C -0.53 -14.40 8.74 -34.44 -0.30 -14.70 16
5 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16
6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16
7 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16
8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16
9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16
10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
12 N -0.62 -14.07 6.10 -5.88 -0.04 -14.10 16
13 N -0.17 -3.65 10.18 32.15 0.33 -3.33 16
14 C -0.03 -0.54 10.75 -14.68 -0.16 -0.69 16
15 C 0.01 0.20 5.88 -104.96 -0.62 -0.42 16
16 C -0.11 -1.25 9.78 -39.15 -0.38 -1.63 16
17 C -0.11 -1.13 10.02 -39.65 -0.40 -1.53 16
18 C -0.11 -1.33 10.05 -39.37 -0.40 -1.72 16
19 C 0.03 0.40 7.14 -39.13 -0.28 0.12 16
20 C 0.05 0.88 6.78 -38.65 -0.26 0.62 16
21 O -0.28 -5.01 10.42 -45.44 -0.47 -5.48 16
22 C 0.21 2.78 8.90 101.05 0.90 3.68 16
23 O -0.32 -4.55 11.41 -45.82 -0.52 -5.07 16
24 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16
25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16
26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16
28 H 0.37 7.66 8.58 -182.59 -1.57 6.09 16
29 H 0.11 1.60 8.02 -52.49 -0.42 1.18 16
30 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16
31 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16
32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16
33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
34 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16
LS Contribution 299.80 15.07 4.52 4.52
Total: -1.00 -30.93 299.80 -7.68 -38.61
By element:
Atomic # 1 Polarization: 8.97 SS G_CDS: -5.23 Total: 3.74 kcal
Atomic # 6 Polarization: -8.61 SS G_CDS: -1.87 Total: -10.48 kcal
Atomic # 7 Polarization: -42.54 SS G_CDS: 0.92 Total: -41.62 kcal
Atomic # 8 Polarization: -9.56 SS G_CDS: -1.00 Total: -10.56 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal
Total LS contribution 4.52 Total: 4.52 kcal
Total: -30.93 -7.68 -38.61 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000771888959.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.569 kcal
(2) G-P(sol) polarization free energy of solvation -30.932 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.637 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds