Wall clock time and date at job start Mon Mar 30 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 N 1.40104 * 120.00312 * 89.99780 * 12 2 1 14 14 C 1.29746 * 120.00087 * 179.97438 * 13 12 2 15 15 C 1.47447 * 119.99851 * 179.97438 * 14 13 12 16 16 C 1.39740 * 120.14514 * 179.97438 * 15 14 13 17 17 C 1.37898 * 119.96573 * 179.97438 * 16 15 14 18 18 C 1.38398 * 120.32492 * 0.02868 * 17 16 15 19 19 C 1.38645 * 120.35982 * 359.97332 * 18 17 16 20 20 C 1.39060 * 119.92148 * 359.74672 * 19 18 17 21 21 O 1.36424 * 108.72166 * 179.80984 * 20 19 18 22 22 C 1.43995 * 105.54154 * 343.09923 * 21 20 19 23 23 O 1.36540 * 131.44534 * 179.97438 * 19 18 17 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99969 * 270.00430 * 12 2 1 29 29 H 1.07997 * 120.00429 * 0.02562 * 14 13 12 30 30 H 1.08000 * 120.01786 * 0.02562 * 16 15 14 31 31 H 1.08005 * 119.83904 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.82480 * 179.97438 * 18 17 16 33 33 H 1.08991 * 110.58624 * 268.30776 * 22 21 20 34 34 H 1.09000 * 110.70253 * 145.47264 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6848 -0.5814 -3.4341 15 6 2.9300 0.1770 -4.6746 16 6 3.3968 -0.4784 -5.8171 17 6 3.6243 0.2343 -6.9755 18 6 3.3932 1.5983 -7.0134 19 6 2.9300 2.2622 -5.8878 20 6 2.6908 1.5549 -4.7147 21 8 2.2495 2.4249 -3.7610 22 6 2.6008 3.7357 -4.2424 23 8 2.6307 3.5770 -5.6732 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 2.1799 -1.6467 -1.1723 29 1 2.8648 -1.6459 -3.4075 30 1 3.5785 -1.5428 -5.7931 31 1 3.9847 -0.2744 -7.8574 32 1 3.5745 2.1487 -7.9248 33 1 3.5814 4.0308 -3.8694 34 1 1.8461 4.4673 -3.9537 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771888959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:27 Heat of formation + Delta-G solvation = 8.961500 kcal Electronic energy + Delta-G solvation = -18893.879913 eV Core-core repulsion = 15794.073358 eV Total energy + Delta-G solvation = -3099.806555 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.91908 -37.87070 -36.43110 -35.91458 -34.01785 -31.81098 -30.14543 -29.77680 -27.07118 -25.62806 -25.23513 -23.42267 -22.65620 -20.60491 -20.10513 -17.89612 -17.49731 -17.32191 -16.36679 -16.14321 -15.53857 -15.00941 -14.42814 -14.28320 -13.83796 -13.40785 -13.24291 -13.00695 -12.67662 -12.51232 -12.31314 -12.08886 -11.49903 -11.24194 -11.01204 -10.94891 -10.79663 -10.53351 -10.24649 -10.22259 -9.50865 -9.06240 -8.79498 -8.49228 -7.94599 -6.80392 -6.14341 -4.22947 1.07134 1.29749 2.87590 3.06667 3.24816 3.29502 3.30961 3.64472 3.76586 3.94833 4.35242 4.59008 4.84056 4.96357 5.11303 5.17840 5.24930 5.29492 5.36151 5.53516 5.86289 6.12109 6.23969 6.35779 6.45167 6.54227 6.73443 6.95278 7.01137 7.15338 7.32406 7.56962 7.77384 7.85162 8.13516 8.28733 8.84038 9.31021 9.43692 10.91488 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032365 B = 0.004276 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.929322 B = 6546.437270 C = 7068.730475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.297 3.703 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.618 5.618 13 N -0.170 5.170 14 C -0.030 4.030 15 C 0.013 3.987 16 C -0.107 4.107 17 C -0.112 4.112 18 C -0.114 4.114 19 C 0.027 3.973 20 C 0.052 3.948 21 O -0.277 6.277 22 C 0.208 3.792 23 O -0.315 6.315 24 H 0.090 0.910 25 H 0.013 0.987 26 H 0.025 0.975 27 H 0.265 0.735 28 H 0.368 0.632 29 H 0.107 0.893 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.596 0.883 -16.441 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.195 3.805 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.355 5.355 13 N 0.016 4.984 14 C -0.237 4.237 15 C 0.009 3.991 16 C -0.127 4.127 17 C -0.130 4.130 18 C -0.134 4.134 19 C -0.017 4.017 20 C 0.005 3.995 21 O -0.191 6.191 22 C 0.096 3.904 23 O -0.232 6.232 24 H 0.109 0.891 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.204 0.796 29 H 0.124 0.876 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.988 2.149 -15.607 16.251 hybrid contribution 0.515 -1.433 0.852 1.745 sum 4.503 0.717 -14.755 15.443 Atomic orbital electron populations 1.22194 0.98928 0.99158 1.00603 1.18552 0.90203 0.93613 0.78136 0.93940 1.21195 1.32378 1.13316 0.90223 0.92254 1.24859 0.94807 0.94989 0.98932 1.69887 1.35928 1.22474 1.24018 0.86477 0.79169 0.79599 0.81677 1.21056 1.20158 1.20182 1.49177 1.71536 1.07806 1.06943 1.74149 1.02764 1.27637 0.93843 1.23324 1.11447 0.96829 0.92112 1.17552 0.99947 0.88124 0.93435 1.20908 1.00805 1.00047 0.90986 1.20697 1.01475 0.92523 0.98306 1.19993 1.02792 0.94270 0.96339 1.19794 1.02508 0.83478 0.95942 1.19838 0.99922 0.92365 0.87420 1.87621 1.75150 1.14696 1.41615 1.25655 1.02321 0.86970 0.75490 1.87325 1.86881 1.23895 1.25106 0.89148 0.96797 0.95564 0.92497 0.79586 0.87608 0.84535 0.84719 0.85292 0.90202 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.29 37.16 0.35 -3.43 16 2 C 0.30 7.73 3.23 -69.09 -0.22 7.51 16 3 H 0.04 1.24 8.14 -51.93 -0.42 0.81 16 4 C -0.53 -14.40 8.74 -34.44 -0.30 -14.70 16 5 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.62 -14.07 6.10 -5.88 -0.04 -14.10 16 13 N -0.17 -3.65 10.18 32.15 0.33 -3.33 16 14 C -0.03 -0.54 10.75 -14.68 -0.16 -0.69 16 15 C 0.01 0.20 5.88 -104.96 -0.62 -0.42 16 16 C -0.11 -1.25 9.78 -39.15 -0.38 -1.63 16 17 C -0.11 -1.13 10.02 -39.65 -0.40 -1.53 16 18 C -0.11 -1.33 10.05 -39.37 -0.40 -1.72 16 19 C 0.03 0.40 7.14 -39.13 -0.28 0.12 16 20 C 0.05 0.88 6.78 -38.65 -0.26 0.62 16 21 O -0.28 -5.01 10.42 -45.44 -0.47 -5.48 16 22 C 0.21 2.78 8.90 101.05 0.90 3.68 16 23 O -0.32 -4.55 11.41 -45.82 -0.52 -5.07 16 24 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.37 7.66 8.58 -182.59 -1.57 6.09 16 29 H 0.11 1.60 8.02 -52.49 -0.42 1.18 16 30 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -30.93 299.80 -7.68 -38.61 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.23 Total: 3.74 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.87 Total: -10.48 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.92 Total: -41.62 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.00 Total: -10.56 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.93 -7.68 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.569 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds