Wall clock time and date at job start Mon Mar 30 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 N 1.40104 * 120.00312 * 89.99780 * 12 2 1 14 14 C 1.29746 * 120.00087 * 179.97438 * 13 12 2 15 15 C 1.47447 * 119.99851 * 179.97438 * 14 13 12 16 16 C 1.39740 * 120.14514 * 179.97438 * 15 14 13 17 17 C 1.37898 * 119.96573 * 179.97438 * 16 15 14 18 18 C 1.38398 * 120.32492 * 0.02868 * 17 16 15 19 19 C 1.38645 * 120.35982 * 359.97332 * 18 17 16 20 20 C 1.39060 * 119.92148 * 359.74672 * 19 18 17 21 21 O 1.36424 * 108.72166 * 179.80984 * 20 19 18 22 22 C 1.43995 * 105.54154 * 343.09923 * 21 20 19 23 23 O 1.36540 * 131.44534 * 179.97438 * 19 18 17 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99969 * 270.00430 * 12 2 1 29 29 H 1.07997 * 120.00429 * 0.02562 * 14 13 12 30 30 H 1.08000 * 120.01786 * 0.02562 * 16 15 14 31 31 H 1.08005 * 119.83904 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.82480 * 179.97438 * 18 17 16 33 33 H 1.08991 * 110.58624 * 268.30776 * 22 21 20 34 34 H 1.09000 * 110.70253 * 145.47264 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6848 -0.5814 -3.4341 15 6 2.9300 0.1770 -4.6746 16 6 3.3968 -0.4784 -5.8171 17 6 3.6243 0.2343 -6.9755 18 6 3.3932 1.5983 -7.0134 19 6 2.9300 2.2622 -5.8878 20 6 2.6908 1.5549 -4.7147 21 8 2.2495 2.4249 -3.7610 22 6 2.6008 3.7357 -4.2424 23 8 2.6307 3.5770 -5.6732 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 2.1799 -1.6467 -1.1723 29 1 2.8648 -1.6459 -3.4075 30 1 3.5785 -1.5428 -5.7931 31 1 3.9847 -0.2744 -7.8574 32 1 3.5745 2.1487 -7.9248 33 1 3.5814 4.0308 -3.8694 34 1 1.8461 4.4673 -3.9537 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771888959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:27 Heat of formation + Delta-G solvation = -11.665467 kcal Electronic energy + Delta-G solvation = -18894.774366 eV Core-core repulsion = 15794.073358 eV Total energy + Delta-G solvation = -3100.701008 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.00317 -38.97151 -37.93043 -37.16203 -35.80289 -33.50045 -31.57347 -30.82681 -28.70552 -27.31252 -26.68659 -24.70700 -23.71456 -22.33842 -21.58966 -19.06937 -18.88975 -18.49814 -17.90841 -17.29394 -16.95182 -16.86444 -15.75456 -15.39834 -15.14739 -14.76566 -14.56717 -14.36966 -14.26048 -13.85431 -13.80050 -13.33162 -13.03301 -12.88425 -12.76184 -12.54241 -12.25527 -12.21097 -12.03910 -11.73735 -11.18023 -10.85988 -10.60128 -9.99067 -8.99943 -8.40966 -8.17927 -6.36544 -0.03094 0.29130 1.42089 1.44518 1.52418 1.70143 1.95635 2.16389 2.46450 2.62758 2.86249 3.09970 3.49216 3.84244 4.00765 4.09955 4.24029 4.29082 4.43725 4.47144 4.66977 4.73964 4.94259 5.05872 5.10691 5.21158 5.24352 5.42374 5.47647 5.56292 5.65764 5.76038 5.85891 6.16015 6.24964 6.39647 6.82511 7.34970 7.78643 8.86446 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032365 B = 0.004276 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.929322 B = 6546.437270 C = 7068.730475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.309 3.691 3 H -0.004 1.004 4 C -0.549 4.549 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.281 1.281 10 H -0.266 1.266 11 H -0.272 1.272 12 N -0.639 5.639 13 N -0.231 5.231 14 C 0.011 3.989 15 C -0.030 4.030 16 C -0.087 4.087 17 C -0.097 4.097 18 C -0.100 4.100 19 C 0.003 3.997 20 C 0.022 3.978 21 O -0.318 6.318 22 C 0.202 3.798 23 O -0.322 6.322 24 H 0.069 0.931 25 H 0.012 0.988 26 H 0.031 0.969 27 H 0.267 0.733 28 H 0.374 0.626 29 H 0.134 0.866 30 H 0.172 0.828 31 H 0.184 0.816 32 H 0.159 0.841 33 H 0.093 0.907 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -0.767 -18.912 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.205 3.795 3 H 0.014 0.986 4 C -0.588 4.588 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.797 3.203 9 H -0.206 1.206 10 H -0.191 1.191 11 H -0.198 1.198 12 N -0.376 5.376 13 N -0.041 5.041 14 C -0.198 4.198 15 C -0.033 4.033 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.041 4.041 20 C -0.025 4.025 21 O -0.234 6.234 22 C 0.090 3.910 23 O -0.239 6.239 24 H 0.088 0.912 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.211 0.789 29 H 0.151 0.849 30 H 0.189 0.811 31 H 0.201 0.799 32 H 0.177 0.823 33 H 0.111 0.889 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.443 0.499 -18.101 18.909 hybrid contribution 0.174 -0.886 1.237 1.531 sum 5.617 -0.387 -16.865 17.780 Atomic orbital electron populations 1.22001 0.98905 0.99016 0.99394 1.18081 0.90175 0.91438 0.79768 0.98619 1.21489 1.32678 1.13577 0.91064 0.91909 1.25752 0.94815 0.95626 1.02012 1.70026 1.36811 1.23747 1.24763 0.85388 0.78562 0.78677 0.77635 1.20599 1.19108 1.19769 1.48580 1.74384 1.07657 1.06977 1.74223 1.06963 1.28460 0.94477 1.24052 1.05893 0.98324 0.91520 1.17933 1.03149 0.88064 0.94138 1.21397 0.97930 1.01699 0.89749 1.21285 0.99287 0.91762 0.99168 1.20593 1.00001 0.95186 0.96121 1.20191 1.04044 0.83373 0.96465 1.20301 1.00926 0.93142 0.88111 1.87560 1.76017 1.16574 1.43223 1.25955 1.03786 0.85942 0.75278 1.87284 1.87233 1.24085 1.25341 0.91216 0.96928 0.94950 0.92375 0.78911 0.84873 0.81084 0.79872 0.82316 0.88917 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.08 9.29 71.98 0.67 -6.41 16 2 C 0.31 16.96 3.23 44.24 0.14 17.11 16 3 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 4 C -0.55 -30.62 8.74 25.60 0.22 -30.39 16 5 H 0.06 3.36 7.79 -2.91 -0.02 3.34 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.92 -52.95 11.32 21.45 0.24 -52.71 16 8 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 N -0.64 -30.25 6.10 -172.53 -1.05 -31.30 16 13 N -0.23 -10.30 10.18 -52.20 -0.53 -10.84 16 14 C 0.01 0.39 10.75 87.43 0.94 1.33 16 15 C -0.03 -0.89 5.88 -20.08 -0.12 -1.01 16 16 C -0.09 -1.67 9.78 22.55 0.22 -1.45 16 17 C -0.10 -1.44 10.02 22.23 0.22 -1.22 16 18 C -0.10 -1.92 10.05 22.41 0.23 -1.70 16 19 C 0.00 0.09 7.14 22.56 0.16 0.25 16 20 C 0.02 0.75 6.78 22.87 0.16 0.90 16 21 O -0.32 -12.13 10.42 -75.15 -0.78 -12.91 16 22 C 0.20 5.58 8.90 113.37 1.01 6.59 16 23 O -0.32 -9.21 11.41 -76.52 -0.87 -10.09 16 24 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 25 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.37 15.96 8.58 -213.31 -1.83 14.13 16 29 H 0.13 3.74 8.02 -2.91 -0.02 3.71 16 30 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 32 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.15 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -71.61 299.80 2.62 -68.99 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -0.71 Total: 18.35 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.30 Total: -14.54 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -1.34 Total: -94.84 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -1.66 Total: -23.00 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -71.61 2.62 -68.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.322 kcal (2) G-P(sol) polarization free energy of solvation -71.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds