Wall clock time and date at job start Mon Mar 30 2020 05:18:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 109.46949 * 2 1
4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3
5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1
6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3
13 13 N 1.40104 * 120.00312 * 89.99780 * 12 2 1
14 14 C 1.29746 * 120.00087 * 179.97438 * 13 12 2
15 15 C 1.47447 * 119.99851 * 179.97438 * 14 13 12
16 16 C 1.39740 * 120.14514 * 179.97438 * 15 14 13
17 17 C 1.37898 * 119.96573 * 179.97438 * 16 15 14
18 18 C 1.38398 * 120.32492 * 0.02868 * 17 16 15
19 19 C 1.38645 * 120.35982 * 359.97332 * 18 17 16
20 20 C 1.39060 * 119.92148 * 359.74672 * 19 18 17
21 21 O 1.36424 * 108.72166 * 179.80984 * 20 19 18
22 22 C 1.43995 * 105.54154 * 343.09923 * 21 20 19
23 23 O 1.36540 * 131.44534 * 179.97438 * 19 18 17
24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3
25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3
26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3
27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
28 28 H 0.97006 * 119.99969 * 270.00430 * 12 2 1
29 29 H 1.07997 * 120.00429 * 0.02562 * 14 13 12
30 30 H 1.08000 * 120.01786 * 0.02562 * 16 15 14
31 31 H 1.08005 * 119.83904 * 180.02562 * 17 16 15
32 32 H 1.07997 * 119.82480 * 179.97438 * 18 17 16
33 33 H 1.08991 * 110.58624 * 268.30776 * 22 21 20
34 34 H 1.09000 * 110.70253 * 145.47264 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2303
5 1 2.6532 -1.5886 1.1313
6 6 1.6992 -0.2395 2.4827
7 7 0.9435 0.8301 2.6034
8 14 2.3213 -1.1207 4.0078
9 1 1.8269 -0.4203 5.2204
10 1 1.8258 -2.5205 4.0075
11 1 3.8063 -1.1213 4.0080
12 7 2.0183 -0.6905 -1.1962
13 7 2.2518 0.0301 -2.3748
14 6 2.6848 -0.5814 -3.4341
15 6 2.9300 0.1770 -4.6746
16 6 3.3968 -0.4784 -5.8171
17 6 3.6243 0.2343 -6.9755
18 6 3.3932 1.5983 -7.0134
19 6 2.9300 2.2622 -5.8878
20 6 2.6908 1.5549 -4.7147
21 8 2.2495 2.4249 -3.7610
22 6 2.6008 3.7357 -4.2424
23 8 2.6307 3.5770 -5.6732
24 1 -0.3634 0.5138 0.8899
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 0.7089 1.1611 3.4845
28 1 2.1799 -1.6467 -1.1723
29 1 2.8648 -1.6459 -3.4075
30 1 3.5785 -1.5428 -5.7931
31 1 3.9847 -0.2744 -7.8574
32 1 3.5745 2.1487 -7.9248
33 1 3.5814 4.0308 -3.8694
34 1 1.8461 4.4673 -3.9537
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000771888959.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:27
Heat of formation + Delta-G solvation = -11.665467 kcal
Electronic energy + Delta-G solvation = -18894.774366 eV
Core-core repulsion = 15794.073358 eV
Total energy + Delta-G solvation = -3100.701008 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 262.110 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-43.00317 -38.97151 -37.93043 -37.16203 -35.80289 -33.50045 -31.57347 -30.82681
-28.70552 -27.31252 -26.68659 -24.70700 -23.71456 -22.33842 -21.58966 -19.06937
-18.88975 -18.49814 -17.90841 -17.29394 -16.95182 -16.86444 -15.75456 -15.39834
-15.14739 -14.76566 -14.56717 -14.36966 -14.26048 -13.85431 -13.80050 -13.33162
-13.03301 -12.88425 -12.76184 -12.54241 -12.25527 -12.21097 -12.03910 -11.73735
-11.18023 -10.85988 -10.60128 -9.99067 -8.99943 -8.40966 -8.17927 -6.36544
-0.03094 0.29130 1.42089 1.44518 1.52418 1.70143 1.95635 2.16389
2.46450 2.62758 2.86249 3.09970 3.49216 3.84244 4.00765 4.09955
4.24029 4.29082 4.43725 4.47144 4.66977 4.73964 4.94259 5.05872
5.10691 5.21158 5.24352 5.42374 5.47647 5.56292 5.65764 5.76038
5.85891 6.16015 6.24964 6.39647 6.82511 7.34970 7.78643 8.86446
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.032365 B = 0.004276 C = 0.003960
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.929322 B = 6546.437270 C = 7068.730475
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.309 3.691
3 H -0.004 1.004
4 C -0.549 4.549
5 H 0.063 0.937
6 C 0.018 3.982
7 N -0.915 5.915
8 Si 0.973 3.027
9 H -0.281 1.281
10 H -0.266 1.266
11 H -0.272 1.272
12 N -0.639 5.639
13 N -0.231 5.231
14 C 0.011 3.989
15 C -0.030 4.030
16 C -0.087 4.087
17 C -0.097 4.097
18 C -0.100 4.100
19 C 0.003 3.997
20 C 0.022 3.978
21 O -0.318 6.318
22 C 0.202 3.798
23 O -0.322 6.322
24 H 0.069 0.931
25 H 0.012 0.988
26 H 0.031 0.969
27 H 0.267 0.733
28 H 0.374 0.626
29 H 0.134 0.866
30 H 0.172 0.828
31 H 0.184 0.816
32 H 0.159 0.841
33 H 0.093 0.907
34 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.047 -0.767 -18.912 19.870
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.205 3.795
3 H 0.014 0.986
4 C -0.588 4.588
5 H 0.081 0.919
6 C -0.182 4.182
7 N -0.553 5.553
8 Si 0.797 3.203
9 H -0.206 1.206
10 H -0.191 1.191
11 H -0.198 1.198
12 N -0.376 5.376
13 N -0.041 5.041
14 C -0.198 4.198
15 C -0.033 4.033
16 C -0.108 4.108
17 C -0.115 4.115
18 C -0.119 4.119
19 C -0.041 4.041
20 C -0.025 4.025
21 O -0.234 6.234
22 C 0.090 3.910
23 O -0.239 6.239
24 H 0.088 0.912
25 H 0.031 0.969
26 H 0.050 0.950
27 H 0.076 0.924
28 H 0.211 0.789
29 H 0.151 0.849
30 H 0.189 0.811
31 H 0.201 0.799
32 H 0.177 0.823
33 H 0.111 0.889
34 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 5.443 0.499 -18.101 18.909
hybrid contribution 0.174 -0.886 1.237 1.531
sum 5.617 -0.387 -16.865 17.780
Atomic orbital electron populations
1.22001 0.98905 0.99016 0.99394 1.18081 0.90175 0.91438 0.79768
0.98619 1.21489 1.32678 1.13577 0.91064 0.91909 1.25752 0.94815
0.95626 1.02012 1.70026 1.36811 1.23747 1.24763 0.85388 0.78562
0.78677 0.77635 1.20599 1.19108 1.19769 1.48580 1.74384 1.07657
1.06977 1.74223 1.06963 1.28460 0.94477 1.24052 1.05893 0.98324
0.91520 1.17933 1.03149 0.88064 0.94138 1.21397 0.97930 1.01699
0.89749 1.21285 0.99287 0.91762 0.99168 1.20593 1.00001 0.95186
0.96121 1.20191 1.04044 0.83373 0.96465 1.20301 1.00926 0.93142
0.88111 1.87560 1.76017 1.16574 1.43223 1.25955 1.03786 0.85942
0.75278 1.87284 1.87233 1.24085 1.25341 0.91216 0.96928 0.94950
0.92375 0.78911 0.84873 0.81084 0.79872 0.82316 0.88917 0.83353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -7.08 9.29 71.98 0.67 -6.41 16
2 C 0.31 16.96 3.23 44.24 0.14 17.11 16
3 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16
4 C -0.55 -30.62 8.74 25.60 0.22 -30.39 16
5 H 0.06 3.36 7.79 -2.91 -0.02 3.34 16
6 C 0.02 1.00 5.30 84.66 0.45 1.45 16
7 N -0.92 -52.95 11.32 21.45 0.24 -52.71 16
8 Si 0.97 43.01 29.54 68.60 2.03 45.04 16
9 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16
10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16
11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
12 N -0.64 -30.25 6.10 -172.53 -1.05 -31.30 16
13 N -0.23 -10.30 10.18 -52.20 -0.53 -10.84 16
14 C 0.01 0.39 10.75 87.43 0.94 1.33 16
15 C -0.03 -0.89 5.88 -20.08 -0.12 -1.01 16
16 C -0.09 -1.67 9.78 22.55 0.22 -1.45 16
17 C -0.10 -1.44 10.02 22.23 0.22 -1.22 16
18 C -0.10 -1.92 10.05 22.41 0.23 -1.70 16
19 C 0.00 0.09 7.14 22.56 0.16 0.25 16
20 C 0.02 0.75 6.78 22.87 0.16 0.90 16
21 O -0.32 -12.13 10.42 -75.15 -0.78 -12.91 16
22 C 0.20 5.58 8.90 113.37 1.01 6.59 16
23 O -0.32 -9.21 11.41 -76.52 -0.87 -10.09 16
24 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16
25 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16
26 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16
27 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16
28 H 0.37 15.96 8.58 -213.31 -1.83 14.13 16
29 H 0.13 3.74 8.02 -2.91 -0.02 3.71 16
30 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16
31 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16
32 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16
33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
34 H 0.15 3.27 8.14 -2.39 -0.02 3.25 16
Total: -1.00 -71.61 299.80 2.62 -68.99
By element:
Atomic # 1 Polarization: 19.06 SS G_CDS: -0.71 Total: 18.35 kcal
Atomic # 6 Polarization: -18.84 SS G_CDS: 4.30 Total: -14.54 kcal
Atomic # 7 Polarization: -93.50 SS G_CDS: -1.34 Total: -94.84 kcal
Atomic # 8 Polarization: -21.34 SS G_CDS: -1.66 Total: -23.00 kcal
Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal
Total: -71.61 2.62 -68.99 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000771888959.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.322 kcal
(2) G-P(sol) polarization free energy of solvation -71.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.287 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.665 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds