Wall clock time and date at job start Mon Mar 30 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47822 * 2 1 4 4 C 1.50700 * 109.47251 * 239.99735 * 2 1 3 5 5 H 1.07998 * 120.00250 * 240.00503 * 4 2 1 6 6 C 1.37880 * 119.99945 * 60.00250 * 4 2 1 7 7 N 1.31516 * 119.99495 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00335 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47060 * 89.99949 * 8 6 4 10 10 H 1.48492 * 109.47047 * 210.00211 * 8 6 4 11 11 H 1.48494 * 109.46981 * 330.00216 * 8 6 4 12 12 C 1.50701 * 109.46921 * 120.00036 * 2 1 3 13 13 O 1.21287 * 120.00133 * 119.99989 * 12 2 1 14 14 N 1.34774 * 120.00228 * 299.99573 * 12 2 1 15 15 C 1.39289 * 120.00364 * 174.45950 * 14 12 2 16 16 C 1.38849 * 120.16081 * 334.78175 * 15 14 12 17 17 C 1.38026 * 120.06919 * 179.97438 * 16 15 14 18 18 C 1.38566 * 120.40523 * 0.02562 * 17 16 15 19 19 C 1.37806 * 120.32670 * 0.02562 * 18 17 16 20 20 C 1.39687 * 119.92283 * 359.71858 * 19 18 17 21 21 C 1.47518 * 120.20044 * 180.27466 * 20 19 18 22 22 N 1.34774 * 119.99851 * 5.21669 * 21 20 19 23 23 O 1.21594 * 120.00087 * 185.21783 * 21 20 19 24 24 H 1.09003 * 109.47230 * 59.99736 * 1 2 3 25 25 H 1.08998 * 109.47324 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46991 * 300.00450 * 1 2 3 27 27 H 0.97000 * 119.99660 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00002 * 354.46992 * 14 12 2 29 29 H 1.08000 * 119.96929 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.79880 * 180.02562 * 17 16 15 31 31 H 1.08000 * 119.84221 * 179.97438 * 18 17 16 32 32 H 1.08000 * 120.03472 * 180.02562 * 19 18 17 33 33 H 0.97003 * 120.00446 * 359.97438 * 22 21 20 34 34 H 0.96997 * 119.99842 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3213 -1.1204 -4.0080 9 1 1.3427 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1122 11 1 3.6292 -1.7584 -3.7122 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.0729 -0.9696 3.5895 16 6 2.2825 -2.3399 3.5092 17 6 2.6458 -3.0510 4.6350 18 6 2.8036 -2.4062 5.8513 19 6 2.5988 -1.0471 5.9500 20 6 2.2359 -0.3131 4.8183 21 6 2.0210 1.1431 4.9157 22 7 2.2761 1.7860 6.0724 23 8 1.6137 1.7634 3.9524 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7090 1.1614 -3.4843 28 1 1.2173 0.5826 2.5452 29 1 2.1611 -2.8498 2.5650 30 1 2.8081 -4.1166 4.5675 31 1 3.0877 -2.9717 6.7265 32 1 2.7234 -0.5492 6.9003 33 1 2.6006 1.2912 6.8411 34 1 2.1351 2.7435 6.1364 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854320893.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:53 Heat of formation + Delta-G solvation = -46.950296 kcal Electronic energy + Delta-G solvation = -19415.824277 eV Core-core repulsion = 16313.593204 eV Total energy + Delta-G solvation = -3102.231073 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61965 -38.95185 -37.73144 -34.52711 -33.79393 -33.57626 -30.82610 -30.75459 -28.98615 -25.13508 -24.10149 -23.44103 -21.82360 -20.80854 -19.28342 -18.12326 -17.13368 -16.81940 -16.16930 -15.83849 -15.29044 -14.93328 -14.62784 -14.40305 -14.16757 -13.90494 -13.15184 -12.96409 -12.72329 -12.36403 -12.01747 -11.60235 -11.43182 -11.00165 -10.73686 -10.65295 -10.37447 -10.16493 -9.96269 -9.86408 -9.83970 -8.98120 -8.97147 -8.61284 -8.33491 -7.74506 -6.01846 -4.06032 0.90266 1.47829 2.89346 3.34990 3.40583 3.42646 3.46885 3.49061 3.76512 4.07773 4.47988 4.74406 4.78855 5.06318 5.31041 5.35156 5.50815 5.61588 5.86311 6.19796 6.24663 6.39278 6.58302 6.64989 6.67054 6.78769 6.86463 6.92871 7.18358 7.28062 7.48906 7.76589 7.96647 8.09219 8.20482 8.39690 9.00231 9.04543 9.59108 11.05787 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028570 B = 0.005388 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.808346 B = 5195.392492 C = 5925.920521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.031 3.969 3 H 0.058 0.942 4 C -0.503 4.503 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.517 3.483 13 O -0.523 6.523 14 N -0.671 5.671 15 C 0.237 3.763 16 C -0.151 4.151 17 C -0.067 4.067 18 C -0.168 4.168 19 C -0.064 4.064 20 C -0.203 4.203 21 C 0.571 3.429 22 N -0.852 5.852 23 O -0.541 6.541 24 H 0.096 0.904 25 H 0.032 0.968 26 H 0.014 0.986 27 H 0.261 0.739 28 H 0.425 0.575 29 H 0.155 0.845 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.400 0.600 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 -1.601 19.376 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 H 0.075 0.925 4 C -0.542 4.542 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.398 6.398 14 N -0.321 5.321 15 C 0.135 3.865 16 C -0.171 4.171 17 C -0.086 4.086 18 C -0.187 4.187 19 C -0.083 4.083 20 C -0.210 4.210 21 C 0.359 3.641 22 N -0.416 5.416 23 O -0.420 6.420 24 H 0.115 0.885 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.270 0.730 29 H 0.173 0.827 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.229 0.771 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.290 -1.862 18.298 18.438 hybrid contribution 0.217 0.183 -0.196 0.345 sum 1.507 -1.679 18.102 18.242 Atomic orbital electron populations 1.21757 0.96139 0.99929 1.01339 1.18912 0.94389 0.97148 0.88552 0.92462 1.21108 1.31308 1.12910 0.88859 0.90674 1.24958 0.95080 0.95035 0.99135 1.69883 1.36922 1.22930 1.23609 0.86419 0.79412 0.79204 0.81982 1.20643 1.21279 1.19742 1.22434 0.77766 0.84452 0.84412 1.90481 1.36151 1.26587 1.86544 1.44725 1.55828 1.27334 1.04232 1.18036 0.91213 0.91124 0.86120 1.21616 1.02487 0.92160 1.00849 1.21259 0.95360 1.00009 0.91976 1.20906 1.05340 0.94387 0.98046 1.20942 0.96661 0.94378 0.96294 1.19496 1.13920 0.92660 0.94885 1.18186 0.76227 0.87122 0.82568 1.43659 1.70970 1.12762 1.14169 1.90631 1.46565 1.68185 1.36573 0.88537 0.94883 0.96652 0.92886 0.72992 0.82712 0.85532 0.85837 0.85925 0.77088 0.76550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.87 37.16 0.33 -2.89 16 2 C 0.03 0.81 2.64 -92.93 -0.24 0.56 16 3 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 4 C -0.50 -14.45 8.37 -34.44 -0.29 -14.74 16 5 H 0.08 2.24 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 12 C 0.52 12.38 6.95 -10.99 -0.08 12.31 16 13 O -0.52 -13.39 12.64 5.55 0.07 -13.32 16 14 N -0.67 -13.74 4.81 -9.69 -0.05 -13.78 16 15 C 0.24 4.25 6.43 -83.48 -0.54 3.71 16 16 C -0.15 -2.56 8.70 -39.43 -0.34 -2.90 16 17 C -0.07 -0.86 10.03 -39.54 -0.40 -1.26 16 18 C -0.17 -1.79 10.02 -39.62 -0.40 -2.19 16 19 C -0.06 -0.68 9.52 -39.20 -0.37 -1.06 16 20 C -0.20 -2.94 5.89 -104.81 -0.62 -3.56 16 21 C 0.57 8.09 8.02 -12.48 -0.10 7.99 16 22 N -0.85 -7.43 8.82 30.45 0.27 -7.17 16 23 O -0.54 -9.76 14.59 5.28 0.08 -9.68 16 24 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.01 0.31 7.70 -51.93 -0.40 -0.09 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.42 8.57 5.41 -40.82 -0.22 8.34 16 29 H 0.16 3.00 5.81 -52.49 -0.31 2.69 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.12 0.81 6.44 -52.49 -0.34 0.47 16 33 H 0.40 2.20 6.89 -40.82 -0.28 1.92 16 34 H 0.40 2.96 8.93 -40.82 -0.36 2.60 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -33.19 288.49 -6.22 -39.41 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -3.40 Total: 10.63 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -3.14 Total: -2.47 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.85 Total: -45.86 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.15 Total: -23.01 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.19 -6.22 -39.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854320893.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.536 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds