Wall clock time and date at job start Mon Mar 30 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47822 * 2 1 4 4 C 1.50700 * 109.47251 * 239.99735 * 2 1 3 5 5 H 1.07998 * 120.00250 * 240.00503 * 4 2 1 6 6 C 1.37880 * 119.99945 * 60.00250 * 4 2 1 7 7 N 1.31516 * 119.99495 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00335 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47060 * 89.99949 * 8 6 4 10 10 H 1.48492 * 109.47047 * 210.00211 * 8 6 4 11 11 H 1.48494 * 109.46981 * 330.00216 * 8 6 4 12 12 C 1.50701 * 109.46921 * 120.00036 * 2 1 3 13 13 O 1.21287 * 120.00133 * 119.99989 * 12 2 1 14 14 N 1.34774 * 120.00228 * 299.99573 * 12 2 1 15 15 C 1.39289 * 120.00364 * 174.45950 * 14 12 2 16 16 C 1.38849 * 120.16081 * 334.78175 * 15 14 12 17 17 C 1.38026 * 120.06919 * 179.97438 * 16 15 14 18 18 C 1.38566 * 120.40523 * 0.02562 * 17 16 15 19 19 C 1.37806 * 120.32670 * 0.02562 * 18 17 16 20 20 C 1.39687 * 119.92283 * 359.71858 * 19 18 17 21 21 C 1.47518 * 120.20044 * 180.27466 * 20 19 18 22 22 N 1.34774 * 119.99851 * 5.21669 * 21 20 19 23 23 O 1.21594 * 120.00087 * 185.21783 * 21 20 19 24 24 H 1.09003 * 109.47230 * 59.99736 * 1 2 3 25 25 H 1.08998 * 109.47324 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46991 * 300.00450 * 1 2 3 27 27 H 0.97000 * 119.99660 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00002 * 354.46992 * 14 12 2 29 29 H 1.08000 * 119.96929 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.79880 * 180.02562 * 17 16 15 31 31 H 1.08000 * 119.84221 * 179.97438 * 18 17 16 32 32 H 1.08000 * 120.03472 * 180.02562 * 19 18 17 33 33 H 0.97003 * 120.00446 * 359.97438 * 22 21 20 34 34 H 0.96997 * 119.99842 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3213 -1.1204 -4.0080 9 1 1.3427 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1122 11 1 3.6292 -1.7584 -3.7122 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.0729 -0.9696 3.5895 16 6 2.2825 -2.3399 3.5092 17 6 2.6458 -3.0510 4.6350 18 6 2.8036 -2.4062 5.8513 19 6 2.5988 -1.0471 5.9500 20 6 2.2359 -0.3131 4.8183 21 6 2.0210 1.1431 4.9157 22 7 2.2761 1.7860 6.0724 23 8 1.6137 1.7634 3.9524 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7090 1.1614 -3.4843 28 1 1.2173 0.5826 2.5452 29 1 2.1611 -2.8498 2.5650 30 1 2.8081 -4.1166 4.5675 31 1 3.0877 -2.9717 6.7265 32 1 2.7234 -0.5492 6.9003 33 1 2.6006 1.2912 6.8411 34 1 2.1351 2.7435 6.1364 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854320893.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:52 Heat of formation + Delta-G solvation = -72.308832 kcal Electronic energy + Delta-G solvation = -19416.923905 eV Core-core repulsion = 16313.593204 eV Total energy + Delta-G solvation = -3103.330701 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.93192 -40.40188 -38.93888 -35.95727 -35.83924 -34.70679 -32.72482 -31.85871 -30.33581 -27.27853 -25.38256 -24.87389 -23.33045 -21.91603 -20.92819 -19.22413 -18.54930 -18.12436 -17.79648 -17.58652 -16.65422 -16.45262 -16.04235 -15.77188 -15.52939 -15.16506 -14.73444 -14.59437 -14.27332 -13.78912 -13.49156 -13.09513 -12.97196 -12.75416 -12.64193 -12.50199 -12.27562 -12.03544 -11.55867 -11.13577 -11.07097 -10.77137 -10.61992 -10.36896 -9.95024 -9.05199 -8.18064 -6.30580 -0.18668 0.36627 1.40331 1.41059 1.53301 1.75898 1.83917 2.21813 2.46137 2.51434 2.92185 3.11204 3.82493 3.87017 4.03082 4.22069 4.44242 4.47642 4.61725 4.64602 4.85387 4.89201 4.94629 5.17685 5.31143 5.40767 5.53713 5.55730 5.66601 5.83790 5.87210 6.02216 6.11556 6.38575 6.59231 6.78367 7.20356 7.31808 7.39891 8.88624 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028570 B = 0.005388 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.808346 B = 5195.392492 C = 5925.920521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.026 3.974 3 H 0.035 0.965 4 C -0.530 4.530 5 H 0.055 0.945 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.552 6.552 14 N -0.666 5.666 15 C 0.187 3.813 16 C -0.179 4.179 17 C -0.064 4.064 18 C -0.146 4.146 19 C -0.048 4.048 20 C -0.205 4.205 21 C 0.564 3.436 22 N -0.820 5.820 23 O -0.590 6.590 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.039 0.961 27 H 0.266 0.734 28 H 0.423 0.577 29 H 0.118 0.882 30 H 0.151 0.849 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.419 0.581 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 -2.168 22.706 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.005 3.995 3 H 0.053 0.947 4 C -0.568 4.568 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.430 6.430 14 N -0.316 5.316 15 C 0.088 3.912 16 C -0.200 4.200 17 C -0.083 4.083 18 C -0.165 4.165 19 C -0.066 4.066 20 C -0.211 4.211 21 C 0.351 3.649 22 N -0.385 5.385 23 O -0.472 6.472 24 H 0.095 0.905 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.269 0.731 29 H 0.136 0.864 30 H 0.169 0.831 31 H 0.190 0.810 32 H 0.194 0.806 33 H 0.253 0.747 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.949 -2.417 21.740 21.961 hybrid contribution 0.048 0.349 -0.976 1.038 sum 1.998 -2.067 20.764 20.963 Atomic orbital electron populations 1.21554 0.94962 0.99688 1.01475 1.18816 0.95424 0.95836 0.89445 0.94715 1.21235 1.32031 1.12941 0.90630 0.92684 1.25705 0.95053 0.95708 1.01729 1.69978 1.37106 1.23584 1.24509 0.85455 0.78682 0.78414 0.78493 1.19646 1.19960 1.20135 1.21882 0.77848 0.84053 0.85268 1.90457 1.37629 1.27693 1.87196 1.44343 1.55872 1.27246 1.04126 1.18379 0.94662 0.91688 0.86479 1.21461 1.05034 0.92293 1.01167 1.21596 0.93942 1.01209 0.91570 1.21483 1.02136 0.94558 0.98314 1.21553 0.93730 0.94541 0.96809 1.19729 1.13465 0.93235 0.94649 1.18310 0.76127 0.87150 0.83280 1.43384 1.68750 1.13352 1.13000 1.90608 1.49028 1.68943 1.38597 0.90481 0.95162 0.94213 0.92455 0.73125 0.86387 0.83113 0.80975 0.80610 0.74731 0.75333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.87 71.98 0.64 -5.37 16 2 C 0.03 1.43 2.64 -12.29 -0.03 1.40 16 3 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.53 -31.99 8.37 25.60 0.21 -31.78 16 5 H 0.05 3.48 6.75 -2.91 -0.02 3.46 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -53.44 11.32 21.45 0.24 -53.20 16 8 Si 0.96 46.03 29.54 68.60 2.03 48.05 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 C 0.52 26.53 6.95 87.66 0.61 27.13 16 13 O -0.55 -30.37 12.64 -3.05 -0.04 -30.41 16 14 N -0.67 -28.80 4.81 -302.95 -1.46 -30.26 16 15 C 0.19 6.84 6.43 38.60 0.25 7.09 16 16 C -0.18 -6.24 8.70 22.37 0.19 -6.05 16 17 C -0.06 -1.51 10.03 22.30 0.22 -1.29 16 18 C -0.15 -2.36 10.02 22.25 0.22 -2.13 16 19 C -0.05 -0.79 9.52 22.52 0.21 -0.57 16 20 C -0.20 -5.56 5.89 -19.99 -0.12 -5.67 16 21 C 0.56 15.09 8.02 86.69 0.70 15.79 16 22 N -0.82 -11.45 8.82 -175.83 -1.55 -13.00 16 23 O -0.59 -21.53 14.59 -4.01 -0.06 -21.59 16 24 H 0.08 4.19 6.07 -2.39 -0.01 4.18 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.75 7.70 -2.38 -0.02 1.73 16 27 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.42 18.07 5.41 -92.71 -0.50 17.57 16 29 H 0.12 4.95 5.81 -2.91 -0.02 4.94 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.18 0.99 6.44 -2.91 -0.02 0.98 16 33 H 0.42 2.39 6.89 -92.71 -0.64 1.75 16 34 H 0.41 4.79 8.93 -92.71 -0.83 3.96 16 Total: -1.00 -78.56 288.49 1.93 -76.63 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.79 Total: 23.77 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 3.56 Total: 0.00 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -2.77 Total: -96.46 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -0.10 Total: -52.00 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -78.56 1.93 -76.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854320893.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.323 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds