Wall clock time and date at job start Mon Mar 30 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47467 * 2 1 4 4 C 1.50701 * 109.47430 * 119.99932 * 2 1 3 5 5 H 1.08001 * 120.00270 * 119.99581 * 4 2 1 6 6 C 1.37879 * 119.99559 * 300.00342 * 4 2 1 7 7 N 1.31521 * 119.99666 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00234 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46904 * 90.00395 * 8 6 4 10 10 H 1.48502 * 109.47310 * 210.00250 * 8 6 4 11 11 H 1.48493 * 109.47238 * 330.00568 * 8 6 4 12 12 C 1.50704 * 109.47125 * 239.99738 * 2 1 3 13 13 O 1.21276 * 119.99913 * 239.99952 * 12 2 1 14 14 N 1.34778 * 119.99890 * 60.00176 * 12 2 1 15 15 C 1.39287 * 119.99948 * 185.59438 * 14 12 2 16 16 C 1.38853 * 120.16498 * 25.20897 * 15 14 12 17 17 C 1.38018 * 120.06753 * 180.27445 * 16 15 14 18 18 C 1.38557 * 120.40639 * 359.49262 * 17 16 15 19 19 C 1.37807 * 120.33132 * 0.50859 * 18 17 16 20 20 C 1.39684 * 119.91807 * 359.74992 * 19 18 17 21 21 C 1.47516 * 120.19741 * 180.02562 * 20 19 18 22 22 N 1.34774 * 120.00051 * 5.27152 * 21 20 19 23 23 O 1.21595 * 120.00099 * 185.26693 * 21 20 19 24 24 H 1.09005 * 109.47070 * 299.99785 * 1 2 3 25 25 H 1.08993 * 109.47203 * 60.00161 * 1 2 3 26 26 H 1.09006 * 109.46874 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99409 * 179.97438 * 7 6 4 28 28 H 0.96998 * 119.99633 * 5.58982 * 14 12 2 29 29 H 1.07997 * 119.96368 * 0.02562 * 16 15 14 30 30 H 1.08004 * 119.79549 * 179.72101 * 17 16 15 31 31 H 1.08002 * 119.83861 * 180.28028 * 18 17 16 32 32 H 1.08001 * 120.03908 * 179.76681 * 19 18 17 33 33 H 0.97002 * 120.00089 * 359.97438 * 22 21 20 34 34 H 0.97009 * 120.00098 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9955 3.9070 11 1 0.8489 2.1772 1.4922 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.0720 -0.9703 -3.5894 16 6 2.2807 -2.3407 -3.5088 17 6 2.6481 -3.0515 -4.6334 18 6 2.8012 -2.4080 -5.8509 19 6 2.5982 -1.0485 -5.9498 20 6 2.2313 -0.3148 -4.8192 21 6 2.0119 1.1406 -4.9182 22 7 2.0610 1.7493 -6.1197 23 8 1.7868 1.7911 -3.9159 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.9032 -0.5278 4.4375 28 1 1.2180 0.5829 -2.5452 29 1 2.1594 -2.8502 -2.5644 30 1 2.8138 -4.1166 -4.5647 31 1 3.0846 -2.9739 -6.7260 32 1 2.7225 -0.5511 -6.9003 33 1 2.2409 1.2304 -6.9193 34 1 1.9171 2.7064 -6.1848 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854320897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:56 Heat of formation + Delta-G solvation = -37.271760 kcal Electronic energy + Delta-G solvation = -19482.537508 eV Core-core repulsion = 16380.726128 eV Total energy + Delta-G solvation = -3101.811380 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71336 -39.07623 -37.82215 -34.61900 -33.91207 -33.65688 -31.33945 -30.88575 -29.27088 -25.14238 -24.23146 -23.65966 -21.92050 -20.86061 -19.33504 -18.21883 -17.18045 -16.89781 -16.72984 -15.87467 -15.39107 -14.91540 -14.83929 -14.55777 -14.16939 -14.02893 -13.25912 -13.19394 -12.91284 -12.46223 -12.30411 -12.05394 -11.69320 -11.48448 -11.01652 -10.60709 -10.39731 -10.24539 -9.92171 -9.90945 -9.62646 -9.11463 -9.04096 -8.71619 -8.56766 -7.83580 -6.05072 -4.05905 0.83803 1.41210 2.82054 3.25225 3.34348 3.36170 3.37303 3.38938 3.61684 3.99158 4.39525 4.68629 4.72397 5.01255 5.24484 5.28285 5.42065 5.52459 5.74347 5.95809 6.13261 6.19371 6.27506 6.33483 6.44080 6.53043 6.58297 6.70946 6.74061 7.11197 7.14745 7.18920 7.52998 7.97161 8.15019 8.52353 8.87510 9.12308 9.53453 11.07544 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027438 B = 0.005841 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.233480 B = 4792.394817 C = 5595.790333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.003 4.003 3 H 0.058 0.942 4 C -0.508 4.508 5 H 0.095 0.905 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.265 1.265 12 C 0.527 3.473 13 O -0.508 6.508 14 N -0.671 5.671 15 C 0.235 3.765 16 C -0.149 4.149 17 C -0.066 4.066 18 C -0.165 4.165 19 C -0.064 4.064 20 C -0.201 4.201 21 C 0.570 3.430 22 N -0.852 5.852 23 O -0.543 6.543 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.265 0.735 28 H 0.422 0.578 29 H 0.156 0.844 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.400 0.600 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 1.821 -22.508 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 H 0.076 0.924 4 C -0.546 4.546 5 H 0.113 0.887 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.191 1.191 12 C 0.318 3.682 13 O -0.381 6.381 14 N -0.320 5.320 15 C 0.134 3.866 16 C -0.170 4.170 17 C -0.085 4.085 18 C -0.184 4.184 19 C -0.083 4.083 20 C -0.208 4.208 21 C 0.358 3.642 22 N -0.415 5.415 23 O -0.421 6.421 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.266 0.734 29 H 0.174 0.826 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.229 0.771 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.839 1.440 -21.339 21.466 hybrid contribution -0.743 1.396 -0.375 1.625 sum -2.583 2.836 -21.713 22.049 Atomic orbital electron populations 1.22125 0.96986 1.01639 0.99610 1.19339 0.93435 0.97901 0.91795 0.92447 1.20898 1.32361 1.14200 0.87109 0.88741 1.24952 0.95760 0.96536 0.95707 1.69882 1.45348 1.40127 0.97870 0.86943 0.80701 0.83905 0.77264 1.20417 1.22203 1.19054 1.21668 0.78284 0.84442 0.83847 1.90533 1.35328 1.25981 1.86242 1.44515 1.56088 1.27128 1.04291 1.17974 0.91606 0.91107 0.85909 1.21621 1.02319 0.92085 1.00960 1.21273 0.95162 1.00123 0.91918 1.20929 1.05072 0.94362 0.98077 1.20950 0.96740 0.94328 0.96280 1.19491 1.13827 0.92656 0.94802 1.18193 0.75456 0.87275 0.83235 1.43681 1.75968 1.12863 1.09026 1.90670 1.49579 1.66391 1.35463 0.92964 0.94637 0.92216 0.92515 0.73448 0.82626 0.85395 0.85751 0.85874 0.77053 0.76550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.58 37.16 0.32 -2.83 16 2 C 0.00 -0.08 2.23 -92.92 -0.21 -0.28 16 3 H 0.06 1.40 7.20 -51.93 -0.37 1.03 16 4 C -0.51 -14.84 8.96 -34.44 -0.31 -15.14 16 5 H 0.09 3.10 7.00 -52.49 -0.37 2.73 16 6 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -27.80 13.96 55.43 0.77 -27.03 16 8 Si 0.88 21.79 24.37 -169.99 -4.14 17.64 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 12 C 0.53 12.10 6.94 -10.98 -0.08 12.02 16 13 O -0.51 -12.86 12.64 5.56 0.07 -12.79 16 14 N -0.67 -12.92 4.70 -9.68 -0.05 -12.96 16 15 C 0.24 4.01 6.43 -83.48 -0.54 3.47 16 16 C -0.15 -2.44 8.70 -39.43 -0.34 -2.79 16 17 C -0.07 -0.81 10.03 -39.54 -0.40 -1.21 16 18 C -0.17 -1.68 10.02 -39.62 -0.40 -2.08 16 19 C -0.06 -0.65 9.52 -39.20 -0.37 -1.02 16 20 C -0.20 -2.76 5.89 -104.81 -0.62 -3.37 16 21 C 0.57 7.59 8.02 -12.48 -0.10 7.49 16 22 N -0.85 -6.78 8.82 30.45 0.27 -6.51 16 23 O -0.54 -9.27 14.65 5.28 0.08 -9.19 16 24 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 25 H 0.03 0.64 7.70 -51.93 -0.40 0.24 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.42 7.79 5.61 -40.82 -0.23 7.56 16 29 H 0.16 2.93 5.81 -52.49 -0.31 2.62 16 30 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.12 0.74 6.44 -52.49 -0.34 0.41 16 33 H 0.40 1.92 6.89 -40.82 -0.28 1.64 16 34 H 0.40 2.66 8.93 -40.82 -0.36 2.30 16 LS Contribution 281.83 15.07 4.25 4.25 Total: -1.00 -35.12 281.83 -5.16 -40.28 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -3.28 Total: 10.03 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -3.13 Total: -3.72 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 1.00 Total: -46.50 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.15 Total: -21.98 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.12 -5.16 -40.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854320897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.012 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds