Wall clock time and date at job start Mon Mar 30 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47467 * 2 1 4 4 C 1.50701 * 109.47430 * 119.99932 * 2 1 3 5 5 H 1.08001 * 120.00270 * 119.99581 * 4 2 1 6 6 C 1.37879 * 119.99559 * 300.00342 * 4 2 1 7 7 N 1.31521 * 119.99666 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 120.00234 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46904 * 90.00395 * 8 6 4 10 10 H 1.48502 * 109.47310 * 210.00250 * 8 6 4 11 11 H 1.48493 * 109.47238 * 330.00568 * 8 6 4 12 12 C 1.50704 * 109.47125 * 239.99738 * 2 1 3 13 13 O 1.21276 * 119.99913 * 239.99952 * 12 2 1 14 14 N 1.34778 * 119.99890 * 60.00176 * 12 2 1 15 15 C 1.39287 * 119.99948 * 185.59438 * 14 12 2 16 16 C 1.38853 * 120.16498 * 25.20897 * 15 14 12 17 17 C 1.38018 * 120.06753 * 180.27445 * 16 15 14 18 18 C 1.38557 * 120.40639 * 359.49262 * 17 16 15 19 19 C 1.37807 * 120.33132 * 0.50859 * 18 17 16 20 20 C 1.39684 * 119.91807 * 359.74992 * 19 18 17 21 21 C 1.47516 * 120.19741 * 180.02562 * 20 19 18 22 22 N 1.34774 * 120.00051 * 5.27152 * 21 20 19 23 23 O 1.21595 * 120.00099 * 185.26693 * 21 20 19 24 24 H 1.09005 * 109.47070 * 299.99785 * 1 2 3 25 25 H 1.08993 * 109.47203 * 60.00161 * 1 2 3 26 26 H 1.09006 * 109.46874 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99409 * 179.97438 * 7 6 4 28 28 H 0.96998 * 119.99633 * 5.58982 * 14 12 2 29 29 H 1.07997 * 119.96368 * 0.02562 * 16 15 14 30 30 H 1.08004 * 119.79549 * 179.72101 * 17 16 15 31 31 H 1.08002 * 119.83861 * 180.28028 * 18 17 16 32 32 H 1.08001 * 120.03908 * 179.76681 * 19 18 17 33 33 H 0.97002 * 120.00089 * 359.97438 * 22 21 20 34 34 H 0.97009 * 120.00098 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9955 3.9070 11 1 0.8489 2.1772 1.4922 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.0720 -0.9703 -3.5894 16 6 2.2807 -2.3407 -3.5088 17 6 2.6481 -3.0515 -4.6334 18 6 2.8012 -2.4080 -5.8509 19 6 2.5982 -1.0485 -5.9498 20 6 2.2313 -0.3148 -4.8192 21 6 2.0119 1.1406 -4.9182 22 7 2.0610 1.7493 -6.1197 23 8 1.7868 1.7911 -3.9159 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.9032 -0.5278 4.4375 28 1 1.2180 0.5829 -2.5452 29 1 2.1594 -2.8502 -2.5644 30 1 2.8138 -4.1166 -4.5647 31 1 3.0846 -2.9739 -6.7260 32 1 2.7225 -0.5511 -6.9003 33 1 2.2409 1.2304 -6.9193 34 1 1.9171 2.7064 -6.1848 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854320897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:56 Heat of formation + Delta-G solvation = -66.464096 kcal Electronic energy + Delta-G solvation = -19483.803382 eV Core-core repulsion = 16380.726128 eV Total energy + Delta-G solvation = -3103.077255 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.97326 -40.44656 -38.95756 -35.97689 -35.90558 -34.70478 -33.40959 -31.86530 -30.49912 -27.19394 -25.57828 -24.93605 -23.33862 -21.90201 -20.92322 -19.25911 -18.86595 -18.32134 -17.80525 -17.58840 -16.85054 -16.45811 -15.99830 -15.81983 -15.50763 -15.29652 -14.89868 -14.73494 -14.28418 -14.16368 -13.78959 -13.48381 -13.04482 -12.90126 -12.61237 -12.55618 -12.16532 -11.60315 -11.52295 -11.30325 -11.07952 -10.80882 -10.75061 -10.49486 -9.96211 -9.07396 -8.31499 -6.39538 -0.19541 0.34891 1.29681 1.36894 1.47418 1.70084 1.82556 2.17451 2.30458 2.51945 2.90576 3.01635 3.79230 3.87178 3.90631 4.15643 4.31833 4.41783 4.45679 4.50828 4.55323 4.67589 4.89141 4.93951 5.17073 5.30723 5.32251 5.44841 5.51177 5.55763 5.85670 5.99747 6.20327 6.39344 6.54178 6.74726 7.15028 7.25886 7.32859 8.85630 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027438 B = 0.005841 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.233480 B = 4792.394817 C = 5595.790333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 H 0.063 0.937 4 C -0.521 4.521 5 H 0.037 0.963 6 C 0.013 3.987 7 N -0.946 5.946 8 Si 0.954 3.046 9 H -0.256 1.256 10 H -0.294 1.294 11 H -0.241 1.241 12 C 0.525 3.475 13 O -0.549 6.549 14 N -0.660 5.660 15 C 0.188 3.812 16 C -0.179 4.179 17 C -0.066 4.066 18 C -0.145 4.145 19 C -0.048 4.048 20 C -0.201 4.201 21 C 0.565 3.435 22 N -0.820 5.820 23 O -0.588 6.588 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.269 0.731 28 H 0.424 0.576 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.172 0.828 32 H 0.177 0.823 33 H 0.419 0.581 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 3.540 -26.962 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.080 0.920 4 C -0.559 4.559 5 H 0.055 0.945 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.778 3.222 9 H -0.182 1.182 10 H -0.221 1.221 11 H -0.165 1.165 12 C 0.315 3.685 13 O -0.426 6.426 14 N -0.310 5.310 15 C 0.089 3.911 16 C -0.199 4.199 17 C -0.085 4.085 18 C -0.164 4.164 19 C -0.067 4.067 20 C -0.207 4.207 21 C 0.352 3.648 22 N -0.385 5.385 23 O -0.470 6.470 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.269 0.731 29 H 0.134 0.866 30 H 0.166 0.834 31 H 0.189 0.811 32 H 0.194 0.806 33 H 0.252 0.748 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.862 3.164 -25.926 26.275 hybrid contribution -0.306 0.729 0.771 1.104 sum -3.168 3.893 -25.155 25.651 Atomic orbital electron populations 1.22011 0.94297 1.01971 1.01363 1.19259 0.95574 0.97344 0.90686 0.91955 1.20997 1.32007 1.13058 0.89887 0.94469 1.25926 0.97276 1.00405 0.94801 1.70052 1.47312 1.42540 0.98693 0.85786 0.79207 0.79254 0.77917 1.18153 1.22121 1.16505 1.21351 0.78187 0.83953 0.84979 1.90522 1.37387 1.27708 1.86995 1.44110 1.55980 1.27064 1.03855 1.18286 0.94907 0.91497 0.86417 1.21446 1.04962 0.92493 1.01048 1.21581 0.94042 1.01186 0.91687 1.21479 1.02035 0.94661 0.98207 1.21562 0.93789 0.94384 0.96927 1.19724 1.13209 0.93353 0.94420 1.18251 0.75412 0.87074 0.84044 1.43409 1.73547 1.13561 1.07983 1.90643 1.51915 1.67081 1.37347 0.93037 0.90758 0.92757 0.92189 0.73070 0.86615 0.83380 0.81091 0.80557 0.74771 0.75290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 8.58 71.98 0.62 -5.30 16 2 C -0.01 -0.35 2.23 -12.29 -0.03 -0.38 16 3 H 0.06 3.07 7.20 -2.39 -0.02 3.05 16 4 C -0.52 -32.37 8.96 25.60 0.23 -32.14 16 5 H 0.04 2.67 7.00 -2.91 -0.02 2.65 16 6 C 0.01 0.80 5.45 84.65 0.46 1.26 16 7 N -0.95 -61.69 13.96 21.45 0.30 -61.39 16 8 Si 0.95 45.18 24.37 68.60 1.67 46.85 16 9 H -0.26 -11.24 6.87 99.48 0.68 -10.55 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.24 -10.45 6.53 99.48 0.65 -9.80 16 12 C 0.53 25.55 6.94 87.66 0.61 26.16 16 13 O -0.55 -30.42 12.64 -3.02 -0.04 -30.46 16 14 N -0.66 -26.23 4.70 -302.94 -1.43 -27.66 16 15 C 0.19 6.47 6.43 38.60 0.25 6.72 16 16 C -0.18 -6.08 8.70 22.36 0.19 -5.89 16 17 C -0.07 -1.53 10.03 22.29 0.22 -1.30 16 18 C -0.15 -2.23 10.02 22.24 0.22 -2.01 16 19 C -0.05 -0.72 9.52 22.52 0.21 -0.51 16 20 C -0.20 -5.03 5.89 -19.99 -0.12 -5.15 16 21 C 0.56 13.57 8.02 86.69 0.70 14.26 16 22 N -0.82 -9.53 8.82 -175.83 -1.55 -11.08 16 23 O -0.59 -19.42 14.65 -4.02 -0.06 -19.48 16 24 H 0.05 2.19 3.27 -2.38 -0.01 2.18 16 25 H 0.07 2.56 7.70 -2.39 -0.02 2.54 16 26 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 28 H 0.42 15.83 5.61 -92.71 -0.52 15.31 16 29 H 0.12 4.83 5.81 -2.91 -0.02 4.82 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 31 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.18 0.76 6.44 -2.91 -0.02 0.75 16 33 H 0.42 1.56 6.89 -92.71 -0.64 0.92 16 34 H 0.41 3.81 8.93 -92.70 -0.83 2.98 16 Total: -1.00 -85.77 281.83 1.59 -84.19 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.88 Total: 23.29 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 3.57 Total: -4.28 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -2.68 Total: -100.12 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.10 Total: -49.94 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.85 kcal Total: -85.77 1.59 -84.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854320897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.722 kcal (2) G-P(sol) polarization free energy of solvation -85.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds