Wall clock time and date at job start Mon Mar 30 2020 04:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47437 * 2 1 4 4 N 1.46501 * 109.47072 * 120.00405 * 2 1 3 5 5 C 1.46502 * 120.00490 * 121.02042 * 4 2 1 6 6 C 1.50697 * 109.46571 * 272.06296 * 5 4 2 7 7 H 1.07999 * 120.00439 * 359.97438 * 6 5 4 8 8 C 1.37888 * 119.99573 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99720 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99697 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47732 * 59.99484 * 10 8 6 12 12 H 1.48503 * 109.46963 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.47004 * 299.99322 * 10 8 6 14 14 C 1.34781 * 119.99713 * 301.01103 * 4 2 1 15 15 O 1.21601 * 119.99841 * 3.96663 * 14 4 2 16 16 C 1.47475 * 119.99875 * 183.95262 * 14 4 2 17 17 C 1.36741 * 126.70724 * 338.25137 * 16 14 4 18 18 O 1.33583 * 108.53380 * 179.82744 * 17 16 14 19 19 C 1.34883 * 109.82562 * 0.44227 * 18 17 16 20 20 C 1.43201 * 125.75822 * 179.69800 * 19 18 17 21 21 N 8.49106 * 102.99999 * 96.89822 * 2 1 3 22 22 C 1.36105 * 108.48155 * 359.72597 * 19 18 17 23 23 H 1.08996 * 109.46874 * 306.67025 * 1 2 3 24 24 H 1.08995 * 109.46714 * 66.67250 * 1 2 3 25 25 H 1.09005 * 109.47103 * 186.67051 * 1 2 3 26 26 H 1.09003 * 109.47188 * 240.00028 * 2 1 3 27 27 H 1.09001 * 109.47366 * 184.55434 * 3 2 1 28 28 H 1.09002 * 109.46788 * 304.55983 * 3 2 1 29 29 H 1.09000 * 109.46899 * 64.55607 * 3 2 1 30 30 H 1.08999 * 109.47537 * 152.05876 * 5 4 2 31 31 H 1.09002 * 109.47078 * 32.05832 * 5 4 2 32 32 H 0.97004 * 119.99755 * 179.97438 * 9 8 6 33 33 H 1.07999 * 125.73184 * 359.96124 * 17 16 14 34 34 H 1.07999 * 126.71512 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8790 -1.8687 1.0619 6 6 2.0244 -3.1049 0.9503 7 1 0.9479 -3.0215 0.9771 8 6 2.6169 -4.3426 0.8149 9 7 3.9276 -4.4441 0.7828 10 14 1.5576 -5.8749 0.6759 11 1 0.6811 -5.7642 -0.5178 12 1 2.4299 -7.0690 0.5399 13 1 0.7197 -6.0096 1.8945 14 6 1.6760 -0.2423 2.4202 15 8 0.9042 0.6908 2.5319 16 6 2.2370 -0.8834 3.6239 17 6 2.7577 -2.1448 3.7107 18 8 3.1644 -2.3509 4.9663 19 6 2.9146 -1.2561 5.7136 20 6 3.2077 -1.1097 7.1076 21 7 3.4401 -0.9937 8.2135 22 6 2.3365 -0.3142 4.9192 23 1 -0.3633 0.6137 0.8243 24 1 -0.3632 0.4069 -0.9436 25 1 -0.3633 -1.0208 0.1194 26 1 1.8934 -0.5138 -0.8900 27 1 3.1271 1.4435 -0.0816 28 1 1.6116 1.9793 -0.8463 29 1 1.7450 1.9322 0.9280 30 1 3.5230 -1.9499 1.9375 31 1 3.4933 -1.7697 0.1670 32 1 4.3445 -5.3148 0.6879 33 1 2.8302 -2.8544 2.8997 34 1 2.0165 0.6734 5.2168 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865081662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:54 Heat of formation + Delta-G solvation = 21.887860 kcal Electronic energy + Delta-G solvation = -19708.186201 eV Core-core repulsion = 16608.940175 eV Total energy + Delta-G solvation = -3099.246026 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.54042 -39.28138 -36.56672 -35.53031 -33.89166 -32.82771 -31.63162 -29.62507 -27.41384 -26.67361 -23.85757 -23.21454 -22.54657 -21.02018 -19.87943 -17.49895 -16.84674 -16.37418 -16.11041 -15.81797 -14.99734 -14.60270 -14.19345 -13.93310 -13.39412 -13.28814 -13.22501 -12.99057 -12.82346 -12.71315 -12.42565 -12.15015 -11.88191 -11.51002 -11.23667 -11.10450 -10.94035 -10.77523 -10.48047 -10.23973 -9.94712 -9.71979 -9.06570 -8.85391 -8.33324 -7.86800 -6.45567 -4.57742 1.22928 2.06298 2.17181 3.10940 3.14010 3.18516 3.20812 3.33798 3.70259 3.85991 4.14001 4.46792 4.85775 4.92084 5.30316 5.39055 5.62804 5.66993 5.74496 5.83845 6.05160 6.14337 6.24410 6.31520 6.40883 6.51736 6.58786 6.68587 6.78205 6.95729 7.11514 7.34690 7.42187 7.52600 7.74221 8.19281 8.56228 8.90048 9.12909 10.57643 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.013156 B = 0.008816 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.858269 B = 3175.128718 C = 4822.015962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 C -0.167 4.167 4 N -0.586 5.586 5 C 0.214 3.786 6 C -0.554 4.554 7 H 0.069 0.931 8 C 0.067 3.933 9 N -0.881 5.881 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.589 3.411 15 O -0.561 6.561 16 C -0.248 4.248 17 C 0.076 3.924 18 O -0.154 6.154 19 C -0.007 4.007 20 C 0.305 3.695 21 N -0.403 5.403 22 C -0.064 4.064 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.273 0.727 33 H 0.273 0.727 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 4.869 0.254 5.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 C -0.225 4.225 4 N -0.316 5.316 5 C 0.094 3.906 6 C -0.592 4.592 7 H 0.088 0.912 8 C -0.138 4.138 9 N -0.518 5.518 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.378 3.622 15 O -0.443 6.443 16 C -0.253 4.253 17 C 0.004 3.996 18 O -0.046 6.046 19 C -0.058 4.058 20 C -0.010 4.010 21 N -0.081 5.081 22 C -0.088 4.088 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.288 0.712 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.229 5.112 2.075 5.652 hybrid contribution -0.545 -1.031 -0.775 1.400 sum -1.774 4.081 1.300 4.636 Atomic orbital electron populations 1.22186 0.95434 1.02725 1.01926 1.20844 0.94379 0.92226 0.87761 1.22196 1.00583 0.96799 1.02891 1.48115 1.49441 1.29929 1.04112 1.20008 0.89870 0.81444 0.99281 1.21582 0.94313 0.90759 1.52550 0.91244 1.25051 0.95189 0.99463 0.94135 1.69907 1.08636 1.25928 1.47285 0.86526 0.80233 0.81485 0.79332 1.19818 1.20881 1.19643 1.17109 0.80522 0.82308 0.82246 1.90637 1.36407 1.30454 1.86835 1.20429 1.12384 0.96717 0.95743 1.27725 0.89969 0.99021 0.82866 1.84115 1.63904 1.36073 1.20537 1.16304 1.13582 0.89519 0.86369 1.23582 0.93156 0.94371 0.89872 1.81282 1.09535 1.06697 1.10596 1.21742 0.96723 0.99539 0.90785 0.90622 0.93037 0.92378 0.89607 0.93096 0.92435 0.90903 0.93416 0.93966 0.91754 0.71221 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.98 37.16 0.33 -2.37 16 2 C 0.15 2.57 3.28 -67.93 -0.22 2.35 16 3 C -0.17 -2.52 9.20 37.16 0.34 -2.18 16 4 N -0.59 -11.20 2.41 -168.71 -0.41 -11.61 16 5 C 0.21 4.43 4.62 -5.19 -0.02 4.41 16 6 C -0.55 -12.43 7.61 -34.44 -0.26 -12.69 16 7 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.07 1.55 5.12 -17.82 -0.09 1.45 16 9 N -0.88 -21.19 13.29 55.43 0.74 -20.45 16 10 Si 0.90 18.47 29.54 -169.99 -5.02 13.45 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 14 C 0.59 11.48 7.04 -12.49 -0.09 11.39 16 15 O -0.56 -11.57 13.29 5.28 0.07 -11.50 16 16 C -0.25 -4.47 5.81 -105.30 -0.61 -5.08 16 17 C 0.08 1.37 9.72 30.19 0.29 1.66 16 18 O -0.15 -2.60 10.62 5.98 0.06 -2.53 16 19 C -0.01 -0.10 7.04 -38.42 -0.27 -0.37 16 20 C 0.30 4.57 15.88 -22.47 -0.36 4.21 16 21 N -0.40 -6.40 18.54 41.84 0.78 -5.62 16 22 C -0.06 -1.00 10.71 -38.98 -0.42 -1.42 16 23 H 0.07 1.35 6.20 -51.93 -0.32 1.02 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 1.43 7.83 -51.93 -0.41 1.03 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.22 6.27 -51.93 -0.33 0.90 16 30 H 0.05 1.00 4.42 -51.93 -0.23 0.77 16 31 H 0.04 0.93 7.97 -51.93 -0.41 0.51 16 32 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 33 H 0.27 5.39 3.57 -52.49 -0.19 5.20 16 34 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -24.19 297.01 -4.22 -28.41 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.54 Total: 4.00 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.38 Total: 1.38 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 1.11 Total: -37.68 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.13 Total: -14.04 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -24.19 -4.22 -28.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865081662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.300 kcal (2) G-P(sol) polarization free energy of solvation -24.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds