Wall clock time and date at job start Mon Mar 30 2020 04:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47437 * 2 1 4 4 N 1.46501 * 109.47072 * 120.00405 * 2 1 3 5 5 C 1.46502 * 120.00490 * 121.02042 * 4 2 1 6 6 C 1.50697 * 109.46571 * 272.06296 * 5 4 2 7 7 H 1.07999 * 120.00439 * 359.97438 * 6 5 4 8 8 C 1.37888 * 119.99573 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99720 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99697 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47732 * 59.99484 * 10 8 6 12 12 H 1.48503 * 109.46963 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.47004 * 299.99322 * 10 8 6 14 14 C 1.34781 * 119.99713 * 301.01103 * 4 2 1 15 15 O 1.21601 * 119.99841 * 3.96663 * 14 4 2 16 16 C 1.47475 * 119.99875 * 183.95262 * 14 4 2 17 17 C 1.36741 * 126.70724 * 338.25137 * 16 14 4 18 18 O 1.33583 * 108.53380 * 179.82744 * 17 16 14 19 19 C 1.34883 * 109.82562 * 0.44227 * 18 17 16 20 20 C 1.43201 * 125.75822 * 179.69800 * 19 18 17 21 21 N 8.49106 * 102.99999 * 96.89822 * 2 1 3 22 22 C 1.36105 * 108.48155 * 359.72597 * 19 18 17 23 23 H 1.08996 * 109.46874 * 306.67025 * 1 2 3 24 24 H 1.08995 * 109.46714 * 66.67250 * 1 2 3 25 25 H 1.09005 * 109.47103 * 186.67051 * 1 2 3 26 26 H 1.09003 * 109.47188 * 240.00028 * 2 1 3 27 27 H 1.09001 * 109.47366 * 184.55434 * 3 2 1 28 28 H 1.09002 * 109.46788 * 304.55983 * 3 2 1 29 29 H 1.09000 * 109.46899 * 64.55607 * 3 2 1 30 30 H 1.08999 * 109.47537 * 152.05876 * 5 4 2 31 31 H 1.09002 * 109.47078 * 32.05832 * 5 4 2 32 32 H 0.97004 * 119.99755 * 179.97438 * 9 8 6 33 33 H 1.07999 * 125.73184 * 359.96124 * 17 16 14 34 34 H 1.07999 * 126.71512 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8790 -1.8687 1.0619 6 6 2.0244 -3.1049 0.9503 7 1 0.9479 -3.0215 0.9771 8 6 2.6169 -4.3426 0.8149 9 7 3.9276 -4.4441 0.7828 10 14 1.5576 -5.8749 0.6759 11 1 0.6811 -5.7642 -0.5178 12 1 2.4299 -7.0690 0.5399 13 1 0.7197 -6.0096 1.8945 14 6 1.6760 -0.2423 2.4202 15 8 0.9042 0.6908 2.5319 16 6 2.2370 -0.8834 3.6239 17 6 2.7577 -2.1448 3.7107 18 8 3.1644 -2.3509 4.9663 19 6 2.9146 -1.2561 5.7136 20 6 3.2077 -1.1097 7.1076 21 7 3.4401 -0.9937 8.2135 22 6 2.3365 -0.3142 4.9192 23 1 -0.3633 0.6137 0.8243 24 1 -0.3632 0.4069 -0.9436 25 1 -0.3633 -1.0208 0.1194 26 1 1.8934 -0.5138 -0.8900 27 1 3.1271 1.4435 -0.0816 28 1 1.6116 1.9793 -0.8463 29 1 1.7450 1.9322 0.9280 30 1 3.5230 -1.9499 1.9375 31 1 3.4933 -1.7697 0.1670 32 1 4.3445 -5.3148 0.6879 33 1 2.8302 -2.8544 2.8997 34 1 2.0165 0.6734 5.2168 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865081662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:54 Heat of formation + Delta-G solvation = 10.397666 kcal Electronic energy + Delta-G solvation = -19708.684453 eV Core-core repulsion = 16608.940175 eV Total energy + Delta-G solvation = -3099.744278 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.90862 -40.78021 -37.83060 -37.07374 -35.42095 -34.34916 -33.09224 -30.99588 -29.10241 -27.94692 -25.40026 -24.65868 -24.04509 -22.37647 -21.23655 -19.00429 -18.55781 -17.80783 -17.48116 -17.30403 -16.48884 -16.22433 -15.70793 -15.26815 -14.73776 -14.56549 -14.51684 -14.41719 -14.33520 -14.06763 -13.92070 -13.50626 -13.34420 -12.86370 -12.78842 -12.69596 -12.46550 -12.17078 -12.07239 -11.73557 -11.63156 -11.07851 -10.67893 -10.50421 -9.71765 -9.42626 -8.22743 -6.39207 -0.07780 0.64776 0.88336 1.46908 1.51198 1.56064 1.84689 2.07531 2.24718 2.34833 2.48168 3.03478 3.14646 3.55426 3.93557 4.04989 4.32441 4.34073 4.44062 4.48391 4.75358 4.86644 4.95735 5.00684 5.04318 5.08100 5.12638 5.21532 5.38580 5.49710 5.69039 5.74721 5.95615 6.00287 6.11296 6.58162 6.82985 7.29561 7.41530 8.79452 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.013156 B = 0.008816 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.858269 B = 3175.128718 C = 4822.015962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 C -0.156 4.156 4 N -0.588 5.588 5 C 0.224 3.776 6 C -0.552 4.552 7 H 0.059 0.941 8 C 0.036 3.964 9 N -0.905 5.905 10 Si 0.945 3.055 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.584 3.416 15 O -0.574 6.574 16 C -0.259 4.259 17 C 0.072 3.928 18 O -0.157 6.157 19 C 0.006 3.994 20 C 0.320 3.680 21 N -0.411 5.411 22 C -0.055 4.055 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.028 0.972 32 H 0.273 0.727 33 H 0.257 0.743 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 5.395 0.416 5.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 C -0.214 4.214 4 N -0.318 5.318 5 C 0.104 3.896 6 C -0.590 4.590 7 H 0.078 0.922 8 C -0.167 4.167 9 N -0.543 5.543 10 Si 0.770 3.230 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.195 1.195 14 C 0.374 3.626 15 O -0.457 6.457 16 C -0.263 4.263 17 C 0.000 4.000 18 O -0.049 6.049 19 C -0.045 4.045 20 C 0.006 3.994 21 N -0.090 5.090 22 C -0.078 4.078 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.272 0.728 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.624 5.645 2.232 6.284 hybrid contribution -0.426 -1.163 -0.804 1.477 sum -2.050 4.482 1.428 5.131 Atomic orbital electron populations 1.22095 0.94888 1.01462 1.02912 1.21106 0.94871 0.93289 0.87027 1.22097 1.00814 0.95350 1.03142 1.48162 1.49142 1.29540 1.04910 1.19777 0.89698 0.81590 0.98568 1.21637 0.93867 0.91520 1.52009 0.92247 1.25529 0.95835 1.01316 0.94038 1.69969 1.09599 1.26304 1.48390 0.85793 0.78964 0.79162 0.79038 1.20017 1.20868 1.19493 1.17309 0.80409 0.82229 0.82641 1.90627 1.36987 1.31038 1.87058 1.20475 1.12669 0.96894 0.96285 1.27244 0.90815 0.98866 0.83090 1.84094 1.63938 1.36693 1.20215 1.16286 1.12924 0.88942 0.86342 1.23304 0.92762 0.93961 0.89405 1.81312 1.09777 1.07058 1.10825 1.21929 0.96003 1.00363 0.89477 0.92042 0.90128 0.94124 0.89436 0.92849 0.89758 0.92555 0.93328 0.95391 0.91786 0.72835 0.79484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 8.98 71.98 0.65 -4.29 16 2 C 0.14 4.62 3.28 44.99 0.15 4.77 16 3 C -0.16 -4.46 9.20 71.98 0.66 -3.80 16 4 N -0.59 -22.32 2.41 -805.92 -1.94 -24.26 16 5 C 0.22 9.34 4.62 85.63 0.40 9.74 16 6 C -0.55 -24.84 7.61 25.60 0.19 -24.65 16 7 H 0.06 2.76 7.81 -2.91 -0.02 2.74 16 8 C 0.04 1.65 5.12 84.66 0.43 2.08 16 9 N -0.91 -43.61 13.29 21.45 0.28 -43.33 16 10 Si 0.94 37.59 29.54 68.60 2.03 39.62 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 13 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 14 C 0.58 22.47 7.04 86.68 0.61 23.08 16 15 O -0.57 -23.21 13.29 -4.04 -0.05 -23.27 16 16 C -0.26 -9.10 5.81 -20.31 -0.12 -9.22 16 17 C 0.07 2.58 9.72 67.47 0.66 3.23 16 18 O -0.16 -5.14 10.62 -1.53 -0.02 -5.16 16 19 C 0.01 0.18 7.04 23.02 0.16 0.34 16 20 C 0.32 8.96 15.88 88.33 1.40 10.36 16 21 N -0.41 -12.28 18.54 19.00 0.35 -11.93 16 22 C -0.05 -1.59 10.71 22.66 0.24 -1.35 16 23 H 0.06 2.13 6.20 -2.39 -0.01 2.11 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.09 2.85 7.83 -2.39 -0.02 2.83 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.81 6.27 -2.39 -0.01 1.80 16 30 H 0.05 2.05 4.42 -2.39 -0.01 2.04 16 31 H 0.03 1.24 7.97 -2.39 -0.02 1.22 16 32 H 0.27 12.66 8.31 -92.71 -0.77 11.89 16 33 H 0.26 10.22 3.57 -2.91 -0.01 10.21 16 34 H 0.19 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -49.79 297.01 7.23 -42.56 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.14 Total: 15.48 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.43 Total: 10.29 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -1.30 Total: -79.52 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.07 Total: -28.42 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -49.79 7.23 -42.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865081662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.955 kcal (2) G-P(sol) polarization free energy of solvation -49.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds