Wall clock time and date at job start Mon Mar 30 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20764 * 120.00334 * 2 1 4 4 C 1.50697 * 120.00372 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.47748 * 180.02562 * 4 2 1 6 6 C 1.50696 * 109.47369 * 179.97438 * 5 4 2 7 7 O 1.21270 * 120.00171 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99862 * 179.97438 * 6 5 4 9 9 C 1.39269 * 120.00234 * 185.53491 * 8 6 5 10 10 C 1.39671 * 119.57903 * 175.00117 * 9 8 6 11 11 C 1.38651 * 119.49988 * 180.02562 * 10 9 8 12 12 C 1.38352 * 118.66743 * 359.73833 * 11 10 9 13 13 C 1.40579 * 119.12573 * 0.50111 * 12 11 10 14 14 C 1.41344 * 119.78409 * 179.77001 * 13 12 11 15 15 H 1.08001 * 120.00136 * 5.86959 * 14 13 12 16 16 C 1.40032 * 119.99908 * 185.87554 * 14 13 12 17 17 N 1.30744 * 119.99932 * 5.93564 * 16 14 13 18 18 Si 1.86797 * 120.00016 * 185.93580 * 16 14 13 19 19 H 1.48503 * 109.46909 * 265.00173 * 18 16 14 20 20 H 1.48501 * 109.47057 * 24.99754 * 18 16 14 21 21 H 1.48495 * 109.47179 * 145.00392 * 18 16 14 22 22 N 1.31906 * 119.57130 * 355.01776 * 9 8 6 23 23 H 1.09001 * 109.47328 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47541 * 300.00332 * 1 2 3 25 25 H 1.09002 * 109.47177 * 60.00559 * 1 2 3 26 26 H 1.09003 * 109.47125 * 59.99862 * 4 2 1 27 27 H 1.09003 * 109.47113 * 300.00247 * 4 2 1 28 28 H 1.09003 * 109.47195 * 59.99568 * 5 4 2 29 29 H 1.09003 * 109.46740 * 300.00139 * 5 4 2 30 30 H 0.97002 * 120.00027 * 5.54302 * 8 6 5 31 31 H 1.07999 * 120.25149 * 359.97438 * 10 9 8 32 32 H 1.07994 * 120.67134 * 180.02562 * 11 10 9 33 33 H 1.07992 * 120.43800 * 180.25046 * 12 11 10 34 34 H 0.96996 * 119.99738 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5182 -2.3306 0.0023 7 8 3.9119 -3.3808 0.0032 8 7 5.8660 -2.3305 0.0024 9 6 6.5624 -3.5311 -0.1128 10 6 7.9551 -3.5130 -0.2173 11 6 8.6467 -4.7091 -0.3324 12 6 7.9301 -5.8926 -0.3347 13 6 6.5290 -5.8443 -0.2315 14 6 5.7827 -7.0446 -0.2373 15 1 6.2918 -7.9971 -0.2253 16 6 4.3833 -6.9990 -0.2589 17 7 3.7686 -5.8526 -0.3907 18 14 3.3948 -8.5759 -0.0995 19 1 3.0458 -9.0802 -1.4520 20 1 4.2024 -9.5962 0.6160 21 1 2.1503 -8.3049 0.6640 22 7 5.8982 -4.6707 -0.1221 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9972 -1.8770 -0.8892 27 1 1.9972 -1.8762 0.8908 28 1 4.0278 -0.4537 0.8910 29 1 4.0284 -0.4541 -0.8889 30 1 6.3509 -1.4943 0.0829 31 1 8.4891 -2.5743 -0.2092 32 1 9.7235 -4.7172 -0.4139 33 1 8.4401 -6.8408 -0.4189 34 1 2.7993 -5.8209 -0.4053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922147567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:49 Heat of formation + Delta-G solvation = -26.394701 kcal Electronic energy + Delta-G solvation = -19171.414988 eV Core-core repulsion = 16070.075273 eV Total energy + Delta-G solvation = -3101.339715 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71226 -39.00676 -37.44898 -34.14897 -32.99769 -32.65243 -30.41111 -30.21262 -28.96344 -25.76953 -24.82004 -21.85671 -21.10969 -19.53568 -19.16020 -17.71965 -16.47504 -16.13159 -15.84769 -14.99445 -14.89289 -14.59421 -14.50237 -14.42554 -13.58089 -13.18503 -13.05157 -12.75353 -12.31051 -12.24297 -11.90538 -11.83036 -11.64973 -11.19422 -10.94878 -10.92277 -10.65535 -10.48398 -9.96952 -9.66395 -9.62670 -9.00925 -8.95207 -7.97604 -7.21029 -6.95604 -6.19304 -4.38823 1.92815 2.77398 3.06560 3.16193 3.19205 3.26452 3.71105 3.77546 4.05595 4.24716 4.84994 4.90933 5.09133 5.16233 5.35386 5.38177 5.50788 5.77632 5.88107 6.00266 6.06179 6.11807 6.15455 6.50090 6.69809 6.84526 6.85685 7.23764 7.46727 7.56247 7.63156 7.81729 8.07813 8.20278 8.47997 8.74863 9.04571 9.27030 10.24005 10.46891 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.006405 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.996048 B = 4370.453202 C = 5972.242962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.356 3.644 3 O -0.468 6.468 4 C -0.155 4.155 5 C -0.131 4.131 6 C 0.470 3.530 7 O -0.415 6.415 8 N -0.668 5.668 9 C 0.371 3.629 10 C -0.356 4.356 11 C -0.036 4.036 12 C -0.306 4.306 13 C 0.273 3.727 14 C -0.428 4.428 15 H 0.082 0.918 16 C 0.061 3.939 17 N -0.660 5.660 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.263 1.263 21 H -0.277 1.277 22 N -0.475 5.475 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 8.403 0.611 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.233 3.767 3 O -0.343 6.343 4 C -0.193 4.193 5 C -0.171 4.171 6 C 0.252 3.748 7 O -0.279 6.279 8 N -0.315 5.315 9 C 0.132 3.868 10 C -0.382 4.382 11 C -0.061 4.061 12 C -0.329 4.329 13 C 0.148 3.852 14 C -0.459 4.459 15 H 0.100 0.900 16 C -0.168 4.168 17 N -0.279 5.279 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.187 1.187 21 H -0.203 1.203 22 N -0.194 5.194 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.874 8.269 0.642 10.773 hybrid contribution 0.799 -0.222 0.025 0.830 sum -6.075 8.047 0.667 10.105 Atomic orbital electron populations 1.22261 0.94669 1.04842 1.04422 1.24767 0.92000 0.90397 0.69521 1.90389 1.72038 1.35433 1.36462 1.21893 0.94451 0.96565 1.06347 1.21466 0.94592 0.96712 1.04357 1.20729 0.82770 0.91459 0.79793 1.91114 1.66158 1.30824 1.39840 1.43451 1.06674 1.07825 1.73526 1.18633 0.87307 0.87098 0.93717 1.20513 0.92791 0.97351 1.27549 1.20570 0.97180 0.92566 0.95748 1.21631 0.95828 0.96503 1.18946 1.18382 0.88281 0.90883 0.87667 1.19567 0.90991 0.92457 1.42864 0.89969 1.26136 0.98707 0.96909 0.95057 1.70260 1.09530 1.23806 1.24300 0.86503 0.79654 0.82891 0.78907 1.19779 1.18695 1.20254 1.68644 1.35333 0.95064 1.20367 0.89745 0.89242 0.89232 0.87339 0.87473 0.89462 0.89361 0.76708 0.89074 0.88633 0.88567 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 10.33 36.00 0.37 -1.28 16 2 C 0.36 4.10 7.27 -29.04 -0.21 3.89 16 3 O -0.47 -6.83 16.72 6.00 0.10 -6.72 16 4 C -0.15 -1.97 4.84 -27.88 -0.13 -2.11 16 5 C -0.13 -1.87 4.99 -27.88 -0.14 -2.01 16 6 C 0.47 9.23 7.79 -10.99 -0.09 9.14 16 7 O -0.42 -9.97 11.87 5.57 0.07 -9.90 16 8 N -0.67 -13.22 5.38 -11.40 -0.06 -13.28 16 9 C 0.37 9.12 7.43 -154.98 -1.15 7.97 16 10 C -0.36 -8.10 9.95 -38.89 -0.39 -8.49 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.31 -7.77 9.83 -38.66 -0.38 -8.15 16 13 C 0.27 7.70 6.53 -85.00 -0.55 7.14 16 14 C -0.43 -11.77 9.13 -37.73 -0.34 -12.12 16 15 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 16 C 0.06 1.59 5.48 -17.34 -0.10 1.49 16 17 N -0.66 -17.94 9.18 55.55 0.51 -17.43 16 18 Si 0.90 19.03 29.56 -169.99 -5.03 14.00 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 N -0.48 -13.33 5.77 -10.25 -0.06 -13.39 16 23 H 0.08 0.57 8.00 -51.93 -0.42 0.16 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.11 1.41 8.10 -51.93 -0.42 0.99 16 27 H 0.11 1.37 8.10 -51.93 -0.42 0.95 16 28 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 29 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.40 6.17 8.70 -40.82 -0.36 5.82 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.27 6.84 8.29 -40.82 -0.34 6.50 16 LS Contribution 299.24 15.07 4.51 4.51 Total: -1.00 -33.48 299.24 -7.58 -41.06 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.11 Total: 6.89 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -3.51 Total: -5.75 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.39 Total: -44.09 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.17 Total: -16.63 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.48 -7.58 -41.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922147567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.666 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds