Wall clock time and date at job start Mon Mar 30 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20764 * 120.00334 * 2 1 4 4 C 1.50697 * 120.00372 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.47748 * 180.02562 * 4 2 1 6 6 C 1.50696 * 109.47369 * 179.97438 * 5 4 2 7 7 O 1.21270 * 120.00171 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99862 * 179.97438 * 6 5 4 9 9 C 1.39269 * 120.00234 * 185.53491 * 8 6 5 10 10 C 1.39671 * 119.57903 * 175.00117 * 9 8 6 11 11 C 1.38651 * 119.49988 * 180.02562 * 10 9 8 12 12 C 1.38352 * 118.66743 * 359.73833 * 11 10 9 13 13 C 1.40579 * 119.12573 * 0.50111 * 12 11 10 14 14 C 1.41344 * 119.78409 * 179.77001 * 13 12 11 15 15 H 1.08001 * 120.00136 * 5.86959 * 14 13 12 16 16 C 1.40032 * 119.99908 * 185.87554 * 14 13 12 17 17 N 1.30744 * 119.99932 * 5.93564 * 16 14 13 18 18 Si 1.86797 * 120.00016 * 185.93580 * 16 14 13 19 19 H 1.48503 * 109.46909 * 265.00173 * 18 16 14 20 20 H 1.48501 * 109.47057 * 24.99754 * 18 16 14 21 21 H 1.48495 * 109.47179 * 145.00392 * 18 16 14 22 22 N 1.31906 * 119.57130 * 355.01776 * 9 8 6 23 23 H 1.09001 * 109.47328 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47541 * 300.00332 * 1 2 3 25 25 H 1.09002 * 109.47177 * 60.00559 * 1 2 3 26 26 H 1.09003 * 109.47125 * 59.99862 * 4 2 1 27 27 H 1.09003 * 109.47113 * 300.00247 * 4 2 1 28 28 H 1.09003 * 109.47195 * 59.99568 * 5 4 2 29 29 H 1.09003 * 109.46740 * 300.00139 * 5 4 2 30 30 H 0.97002 * 120.00027 * 5.54302 * 8 6 5 31 31 H 1.07999 * 120.25149 * 359.97438 * 10 9 8 32 32 H 1.07994 * 120.67134 * 180.02562 * 11 10 9 33 33 H 1.07992 * 120.43800 * 180.25046 * 12 11 10 34 34 H 0.96996 * 119.99738 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5182 -2.3306 0.0023 7 8 3.9119 -3.3808 0.0032 8 7 5.8660 -2.3305 0.0024 9 6 6.5624 -3.5311 -0.1128 10 6 7.9551 -3.5130 -0.2173 11 6 8.6467 -4.7091 -0.3324 12 6 7.9301 -5.8926 -0.3347 13 6 6.5290 -5.8443 -0.2315 14 6 5.7827 -7.0446 -0.2373 15 1 6.2918 -7.9971 -0.2253 16 6 4.3833 -6.9990 -0.2589 17 7 3.7686 -5.8526 -0.3907 18 14 3.3948 -8.5759 -0.0995 19 1 3.0458 -9.0802 -1.4520 20 1 4.2024 -9.5962 0.6160 21 1 2.1503 -8.3049 0.6640 22 7 5.8982 -4.6707 -0.1221 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9972 -1.8770 -0.8892 27 1 1.9972 -1.8762 0.8908 28 1 4.0278 -0.4537 0.8910 29 1 4.0284 -0.4541 -0.8889 30 1 6.3509 -1.4943 0.0829 31 1 8.4891 -2.5743 -0.2092 32 1 9.7235 -4.7172 -0.4139 33 1 8.4401 -6.8408 -0.4189 34 1 2.7993 -5.8209 -0.4053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922147567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:49 Heat of formation + Delta-G solvation = -47.558741 kcal Electronic energy + Delta-G solvation = -19172.332730 eV Core-core repulsion = 16070.075273 eV Total energy + Delta-G solvation = -3102.257457 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09616 -40.34444 -39.19496 -35.93971 -34.82721 -33.84200 -32.22385 -31.35377 -30.58691 -27.57996 -26.16529 -23.62261 -22.92660 -20.90757 -20.38656 -19.54313 -17.95389 -17.83085 -16.95893 -16.51384 -16.27568 -16.14031 -15.83194 -15.76130 -15.40990 -14.78952 -14.47516 -14.33313 -13.69051 -13.60677 -13.01847 -12.94766 -12.86757 -12.78278 -12.70340 -12.56597 -12.31520 -12.08904 -11.78680 -11.44013 -10.84760 -10.63253 -10.61390 -9.90211 -9.09024 -8.81266 -8.09002 -6.39856 0.92025 1.01272 1.24921 1.41733 1.52304 1.55951 2.14914 2.28225 2.32221 2.99584 3.22465 3.78058 4.03694 4.09118 4.18077 4.32348 4.40312 4.64549 4.65200 4.75268 4.78537 4.91460 4.94764 4.96197 5.06811 5.09789 5.19292 5.31557 5.68850 5.86292 5.93055 6.17234 6.37455 6.55825 6.75826 6.85237 7.08930 7.69453 8.34306 8.57668 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.006405 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.996048 B = 4370.453202 C = 5972.242962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.367 3.633 3 O -0.500 6.500 4 C -0.155 4.155 5 C -0.115 4.115 6 C 0.463 3.537 7 O -0.461 6.461 8 N -0.659 5.659 9 C 0.348 3.652 10 C -0.349 4.349 11 C -0.035 4.035 12 C -0.332 4.332 13 C 0.238 3.762 14 C -0.469 4.469 15 H 0.084 0.916 16 C 0.015 3.985 17 N -0.693 5.693 18 Si 0.975 3.025 19 H -0.264 1.264 20 H -0.259 1.259 21 H -0.271 1.271 22 N -0.508 5.508 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.420 0.580 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 9.464 0.713 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.246 3.754 3 O -0.377 6.377 4 C -0.193 4.193 5 C -0.155 4.155 6 C 0.248 3.752 7 O -0.328 6.328 8 N -0.308 5.308 9 C 0.109 3.891 10 C -0.374 4.374 11 C -0.059 4.059 12 C -0.355 4.355 13 C 0.113 3.887 14 C -0.500 4.500 15 H 0.102 0.898 16 C -0.211 4.211 17 N -0.312 5.312 18 Si 0.796 3.204 19 H -0.189 1.189 20 H -0.183 1.183 21 H -0.196 1.196 22 N -0.228 5.228 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.257 0.743 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.187 9.381 0.744 11.841 hybrid contribution 1.032 -0.426 -0.010 1.117 sum -6.155 8.954 0.734 10.890 Atomic orbital electron populations 1.22258 0.91518 1.06191 1.05594 1.24959 0.93494 0.88930 0.68017 1.90388 1.72962 1.36112 1.38280 1.21907 0.93673 0.97589 1.06119 1.21392 0.94824 0.93612 1.05701 1.21663 0.82626 0.92787 0.78158 1.91109 1.66959 1.33038 1.41720 1.43490 1.07086 1.07327 1.72903 1.19173 0.88700 0.87753 0.93438 1.20984 0.92331 0.99003 1.25075 1.21034 0.99196 0.91703 0.93967 1.21816 0.95265 0.98075 1.20322 1.18870 0.89822 0.91557 0.88462 1.19890 0.92311 0.92655 1.45097 0.89781 1.26973 0.99245 1.00569 0.94311 1.70416 1.09711 1.25967 1.25067 0.85308 0.77767 0.78186 0.79103 1.18919 1.18328 1.19593 1.68613 1.36685 0.95975 1.21477 0.88425 0.87886 0.87960 0.87834 0.87687 0.87762 0.88037 0.74275 0.85227 0.84659 0.87830 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.70 10.33 71.23 0.74 -1.97 16 2 C 0.37 7.81 7.27 29.10 0.21 8.02 16 3 O -0.50 -13.74 16.72 -1.46 -0.02 -13.76 16 4 C -0.16 -3.82 4.84 29.85 0.14 -3.67 16 5 C -0.12 -3.15 4.99 29.85 0.15 -3.00 16 6 C 0.46 18.14 7.79 87.66 0.68 18.82 16 7 O -0.46 -22.73 11.87 -3.00 -0.04 -22.76 16 8 N -0.66 -25.58 5.38 -308.38 -1.66 -27.24 16 9 C 0.35 17.05 7.43 133.25 0.99 18.04 16 10 C -0.35 -15.18 9.95 22.71 0.23 -14.96 16 11 C -0.03 -1.54 10.15 22.40 0.23 -1.32 16 12 C -0.33 -17.02 9.83 22.87 0.22 -16.79 16 13 C 0.24 13.86 6.53 40.20 0.26 14.12 16 14 C -0.47 -26.75 9.13 23.47 0.21 -26.53 16 15 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 16 C 0.01 0.79 5.48 85.29 0.47 1.26 16 17 N -0.69 -38.91 9.18 21.84 0.20 -38.71 16 18 Si 0.98 40.03 29.56 68.60 2.03 42.06 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 22 N -0.51 -29.22 5.77 -186.35 -1.08 -30.29 16 23 H 0.10 1.09 8.00 -2.39 -0.02 1.07 16 24 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.10 2.67 8.10 -2.39 -0.02 2.65 16 27 H 0.11 2.64 8.10 -2.39 -0.02 2.63 16 28 H 0.10 2.53 8.10 -2.39 -0.02 2.51 16 29 H 0.10 2.55 8.10 -2.39 -0.02 2.53 16 30 H 0.42 12.17 8.70 -92.71 -0.81 11.36 16 31 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 33 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 34 H 0.27 14.23 8.29 -92.71 -0.77 13.46 16 Total: -1.00 -74.98 299.24 4.28 -70.70 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.32 Total: 27.99 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.54 Total: -7.98 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -2.54 Total: -96.24 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.06 Total: -36.53 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -74.98 4.28 -70.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922147567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.138 kcal (2) G-P(sol) polarization free energy of solvation -74.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds