Wall clock time and date at job start Mon Mar 30 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47425 * 2 1 4 4 C 1.46497 * 120.00000 * 271.89434 * 3 2 1 5 5 C 1.50698 * 109.47227 * 265.04332 * 4 3 2 6 6 H 1.08002 * 119.99800 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00172 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99741 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47205 * 60.00189 * 9 7 5 11 11 H 1.48493 * 109.46833 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46840 * 300.00051 * 9 7 5 13 13 C 1.34779 * 119.99968 * 91.88732 * 3 2 1 14 14 O 1.21486 * 120.00213 * 354.62231 * 13 3 2 15 15 C 1.48362 * 119.99706 * 174.89130 * 13 3 2 16 16 C 1.39327 * 119.54097 * 173.35347 * 15 13 3 17 17 C 1.38402 * 119.21760 * 179.97438 * 16 15 13 18 18 C 1.40122 * 118.33185 * 0.02562 * 17 16 15 19 19 C 1.47364 * 120.48678 * 179.97438 * 18 17 16 20 20 O 1.21228 * 119.99858 * 179.97438 * 19 18 17 21 21 C 1.39975 * 119.02354 * 359.97438 * 18 17 16 22 22 N 1.31380 * 120.68136 * 359.74676 * 21 18 17 23 23 H 1.09000 * 109.47154 * 60.00090 * 1 2 3 24 24 H 1.09000 * 109.47094 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47389 * 300.00120 * 1 2 3 26 26 H 1.08999 * 109.47176 * 239.99411 * 2 1 3 27 27 H 1.09000 * 109.47154 * 119.99910 * 2 1 3 28 28 H 1.08998 * 109.47423 * 25.04258 * 4 3 2 29 29 H 1.08998 * 109.47154 * 145.04592 * 4 3 2 30 30 H 0.97004 * 119.99438 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.38563 * 359.96447 * 16 15 13 32 32 H 1.08002 * 120.82985 * 180.02562 * 17 16 15 33 33 H 1.07996 * 120.00356 * 0.02562 * 19 18 17 34 34 H 1.08000 * 119.65961 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2230 2.0857 -1.2680 5 6 3.6643 1.9552 -1.6883 6 1 4.3584 1.4024 -1.0726 7 6 4.0967 2.5408 -2.8593 8 7 3.2515 3.2135 -3.6092 9 14 5.8832 2.3784 -3.3805 10 1 6.2204 0.9423 -3.5517 11 1 6.0907 3.0926 -4.6657 12 1 6.7588 2.9716 -2.3381 13 6 2.2793 2.0037 1.1666 14 8 2.0178 1.4561 2.2191 15 6 2.8803 3.3601 1.1653 16 6 3.0179 4.0516 2.3670 17 6 3.5799 5.3164 2.3581 18 6 3.9901 5.8532 1.1305 19 6 4.5939 7.1959 1.0660 20 8 4.9461 7.6515 -0.0008 21 6 3.8178 5.0953 -0.0336 22 7 3.2845 3.8958 0.0201 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.5806 1.6504 -2.0334 29 1 1.9753 3.1397 -1.1421 30 1 3.5556 3.6252 -4.4332 31 1 2.6896 3.6060 3.2944 32 1 3.6994 5.8754 3.2744 33 1 4.7235 7.7737 1.9692 34 1 4.1299 5.4992 -0.9854 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:01 Heat of formation + Delta-G solvation = -12.378494 kcal Electronic energy + Delta-G solvation = -19719.504514 eV Core-core repulsion = 16618.772587 eV Total energy + Delta-G solvation = -3100.731927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35281 -39.01390 -37.94592 -35.35603 -32.84262 -32.36974 -31.26213 -30.14549 -26.98667 -25.67782 -23.50543 -22.98175 -22.75312 -21.13665 -19.19281 -17.08574 -16.86734 -16.30557 -16.07226 -15.48727 -14.83168 -14.61851 -14.48700 -14.21729 -14.11571 -13.64600 -13.09607 -12.94457 -12.89087 -12.30101 -12.23342 -11.87099 -11.60159 -11.24715 -10.89252 -10.74444 -10.48491 -10.10050 -9.94940 -9.70016 -9.61088 -9.48224 -8.88608 -8.49702 -8.19704 -7.71794 -5.99585 -3.96804 0.48106 1.56208 2.39419 3.31801 3.36752 3.37623 3.42412 3.74715 4.21006 4.34789 4.45840 4.75672 4.91806 5.06799 5.16082 5.37375 5.41354 5.55083 5.68379 5.77401 5.86336 6.03898 6.15763 6.18980 6.23018 6.38937 6.61852 6.80285 6.86951 7.41104 7.47118 7.65108 7.90922 8.23778 8.28416 8.36272 8.84075 9.01251 9.60952 11.08864 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.010260 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.730050 B = 2728.394436 C = 4465.961046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.571 5.571 4 C 0.238 3.762 5 C -0.488 4.488 6 H 0.050 0.950 7 C 0.068 3.932 8 N -0.891 5.891 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.279 1.279 13 C 0.559 3.441 14 O -0.569 6.569 15 C 0.110 3.890 16 C -0.140 4.140 17 C -0.049 4.049 18 C -0.242 4.242 19 C 0.388 3.612 20 O -0.455 6.455 21 C 0.154 3.846 22 N -0.380 5.380 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.261 0.739 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.104 0.896 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 3.348 9.920 10.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.300 5.300 4 C 0.119 3.881 5 C -0.528 4.528 6 H 0.068 0.932 7 C -0.133 4.133 8 N -0.531 5.531 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.205 1.205 13 C 0.346 3.654 14 O -0.450 6.450 15 C -0.029 4.029 16 C -0.161 4.161 17 C -0.075 4.075 18 C -0.246 4.246 19 C 0.245 3.755 20 O -0.328 6.328 21 C -0.005 4.005 22 N -0.090 5.090 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.120 0.880 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.597 2.881 8.890 9.481 hybrid contribution 1.234 0.388 0.373 1.347 sum -0.363 3.269 9.264 9.830 Atomic orbital electron populations 1.22100 0.96558 1.01360 1.02116 1.21352 0.93742 0.83380 1.02643 1.48326 1.60168 1.13241 1.08232 1.19866 0.96889 0.93559 0.77757 1.21124 0.94469 1.31814 1.05389 0.93160 1.24731 0.96811 0.95340 0.96464 1.69899 1.34227 1.34908 1.14065 0.86796 0.86007 0.78117 0.77877 1.20489 1.21265 1.20501 1.17960 0.78866 0.84592 0.83996 1.90666 1.55760 1.66926 1.31630 1.21680 0.95963 0.95460 0.89769 1.22020 0.99723 0.94788 0.99525 1.21627 0.94194 0.94611 0.97056 1.22181 1.06555 0.99742 0.96072 1.23974 0.73264 0.85599 0.92626 1.90542 1.37887 1.70188 1.34143 1.23491 0.90337 0.88869 0.97817 1.69063 1.05383 1.09472 1.25088 0.92412 0.92286 0.92746 0.90187 0.90988 0.95500 0.91659 0.92908 0.83725 0.84071 0.87991 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.11 2.04 6.09 -4.04 -0.02 2.02 16 3 N -0.57 -12.26 2.47 -175.99 -0.43 -12.70 16 4 C 0.24 5.74 4.75 -5.20 -0.02 5.72 16 5 C -0.49 -12.74 7.43 -34.44 -0.26 -12.99 16 6 H 0.05 1.36 7.81 -52.49 -0.41 0.95 16 7 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 9 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.56 11.94 7.61 -12.09 -0.09 11.84 16 14 O -0.57 -12.45 15.93 5.38 0.09 -12.37 16 15 C 0.11 2.17 6.56 -82.91 -0.54 1.63 16 16 C -0.14 -2.17 9.61 -39.12 -0.38 -2.55 16 17 C -0.05 -0.61 9.94 -38.81 -0.39 -1.00 16 18 C -0.24 -3.51 5.89 -104.83 -0.62 -4.13 16 19 C 0.39 4.76 11.49 34.44 0.40 5.15 16 20 O -0.46 -7.50 17.19 5.60 0.10 -7.40 16 21 C 0.15 2.92 10.76 -17.09 -0.18 2.73 16 22 N -0.38 -8.10 4.76 -9.41 -0.04 -8.14 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 27 H 0.07 1.29 7.44 -51.93 -0.39 0.91 16 28 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 29 H 0.07 1.67 5.73 -51.93 -0.30 1.37 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.14 2.05 7.64 -52.49 -0.40 1.64 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.17 3.31 7.65 -52.49 -0.40 2.91 16 LS Contribution 301.57 15.07 4.54 4.54 Total: -1.00 -31.03 301.57 -5.85 -36.88 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.98 Total: -1.02 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -1.83 Total: 7.97 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.26 Total: -44.73 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.18 Total: -19.77 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.03 -5.85 -36.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.498 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds