Wall clock time and date at job start Mon Mar 30 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47425 * 2 1 4 4 C 1.46497 * 120.00000 * 271.89434 * 3 2 1 5 5 C 1.50698 * 109.47227 * 265.04332 * 4 3 2 6 6 H 1.08002 * 119.99800 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00172 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99741 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99928 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47205 * 60.00189 * 9 7 5 11 11 H 1.48493 * 109.46833 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46840 * 300.00051 * 9 7 5 13 13 C 1.34779 * 119.99968 * 91.88732 * 3 2 1 14 14 O 1.21486 * 120.00213 * 354.62231 * 13 3 2 15 15 C 1.48362 * 119.99706 * 174.89130 * 13 3 2 16 16 C 1.39327 * 119.54097 * 173.35347 * 15 13 3 17 17 C 1.38402 * 119.21760 * 179.97438 * 16 15 13 18 18 C 1.40122 * 118.33185 * 0.02562 * 17 16 15 19 19 C 1.47364 * 120.48678 * 179.97438 * 18 17 16 20 20 O 1.21228 * 119.99858 * 179.97438 * 19 18 17 21 21 C 1.39975 * 119.02354 * 359.97438 * 18 17 16 22 22 N 1.31380 * 120.68136 * 359.74676 * 21 18 17 23 23 H 1.09000 * 109.47154 * 60.00090 * 1 2 3 24 24 H 1.09000 * 109.47094 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47389 * 300.00120 * 1 2 3 26 26 H 1.08999 * 109.47176 * 239.99411 * 2 1 3 27 27 H 1.09000 * 109.47154 * 119.99910 * 2 1 3 28 28 H 1.08998 * 109.47423 * 25.04258 * 4 3 2 29 29 H 1.08998 * 109.47154 * 145.04592 * 4 3 2 30 30 H 0.97004 * 119.99438 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.38563 * 359.96447 * 16 15 13 32 32 H 1.08002 * 120.82985 * 180.02562 * 17 16 15 33 33 H 1.07996 * 120.00356 * 0.02562 * 19 18 17 34 34 H 1.08000 * 119.65961 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2230 2.0857 -1.2680 5 6 3.6643 1.9552 -1.6883 6 1 4.3584 1.4024 -1.0726 7 6 4.0967 2.5408 -2.8593 8 7 3.2515 3.2135 -3.6092 9 14 5.8832 2.3784 -3.3805 10 1 6.2204 0.9423 -3.5517 11 1 6.0907 3.0926 -4.6657 12 1 6.7588 2.9716 -2.3381 13 6 2.2793 2.0037 1.1666 14 8 2.0178 1.4561 2.2191 15 6 2.8803 3.3601 1.1653 16 6 3.0179 4.0516 2.3670 17 6 3.5799 5.3164 2.3581 18 6 3.9901 5.8532 1.1305 19 6 4.5939 7.1959 1.0660 20 8 4.9461 7.6515 -0.0008 21 6 3.8178 5.0953 -0.0336 22 7 3.2845 3.8958 0.0201 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.5806 1.6504 -2.0334 29 1 1.9753 3.1397 -1.1421 30 1 3.5556 3.6252 -4.4332 31 1 2.6896 3.6060 3.2944 32 1 3.6994 5.8754 3.2744 33 1 4.7235 7.7737 1.9692 34 1 4.1299 5.4992 -0.9854 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930463972.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:01 Heat of formation + Delta-G solvation = -32.066582 kcal Electronic energy + Delta-G solvation = -19720.358253 eV Core-core repulsion = 16618.772587 eV Total energy + Delta-G solvation = -3101.585666 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.73821 -40.37936 -39.26504 -37.04964 -34.62775 -33.84199 -32.62796 -31.61522 -28.89433 -26.96649 -25.01067 -24.67966 -24.15013 -22.32918 -20.70136 -18.68428 -18.28159 -18.12498 -17.40595 -16.85250 -16.46810 -16.25535 -15.93314 -15.63489 -15.39898 -15.03672 -14.43290 -14.39416 -14.30821 -14.11959 -13.66892 -13.42376 -13.12310 -12.98206 -12.69401 -12.57048 -12.13979 -11.82358 -11.66299 -11.20493 -11.01437 -10.88525 -10.44397 -10.22497 -9.72369 -9.45607 -8.05778 -6.08339 -0.76461 0.36748 1.21672 1.37893 1.39863 1.45528 1.96497 2.21495 2.46592 2.95968 3.15885 3.29373 3.42031 3.73981 3.87825 4.00180 4.15406 4.23623 4.37899 4.53309 4.62926 4.79629 4.82074 4.90953 4.97023 5.03684 5.11319 5.26539 5.44424 5.60569 5.82313 5.88587 6.25629 6.46822 6.50286 6.86541 6.98392 7.26631 7.53156 9.01918 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.010260 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.730050 B = 2728.394436 C = 4465.961046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.105 3.895 3 N -0.582 5.582 4 C 0.259 3.741 5 C -0.485 4.485 6 H 0.035 0.965 7 C 0.031 3.969 8 N -0.919 5.919 9 Si 0.933 3.067 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.554 3.446 14 O -0.579 6.579 15 C 0.072 3.928 16 C -0.132 4.132 17 C -0.014 4.014 18 C -0.231 4.231 19 C 0.402 3.598 20 O -0.502 6.502 21 C 0.121 3.879 22 N -0.425 5.425 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.008 0.992 29 H 0.052 0.948 30 H 0.260 0.740 31 H 0.163 0.837 32 H 0.210 0.790 33 H 0.181 0.819 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 4.598 12.723 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 N -0.310 5.310 4 C 0.138 3.862 5 C -0.524 4.524 6 H 0.053 0.947 7 C -0.168 4.168 8 N -0.560 5.560 9 Si 0.761 3.239 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.341 3.659 14 O -0.462 6.462 15 C -0.066 4.066 16 C -0.152 4.152 17 C -0.039 4.039 18 C -0.235 4.235 19 C 0.262 3.738 20 O -0.377 6.377 21 C -0.039 4.039 22 N -0.135 5.135 23 H 0.068 0.932 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.181 0.819 32 H 0.227 0.773 33 H 0.197 0.803 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.010 4.101 11.709 12.448 hybrid contribution 1.046 0.061 -0.364 1.109 sum 0.035 4.162 11.345 12.085 Atomic orbital electron populations 1.22001 0.94405 1.03247 1.01285 1.21550 0.95553 0.81984 1.02664 1.48344 1.60812 1.14304 1.07536 1.19405 0.95389 0.92950 0.78420 1.21142 0.95042 1.31200 1.05043 0.94691 1.25251 0.99663 0.95253 0.96636 1.69989 1.35557 1.36033 1.14425 0.86005 0.82428 0.78154 0.77335 1.19883 1.20952 1.20892 1.18351 0.78461 0.85449 0.83615 1.90630 1.56427 1.67561 1.31558 1.21649 0.98344 0.95416 0.91185 1.22326 0.98823 0.95726 0.98363 1.22272 0.90266 0.93015 0.98360 1.22591 1.05036 1.00664 0.95206 1.24908 0.70740 0.84182 0.93973 1.90558 1.39726 1.70707 1.36677 1.23242 0.92433 0.89375 0.98886 1.68701 1.06839 1.11101 1.26823 0.93211 0.89021 0.93462 0.90326 0.90703 0.97406 0.93064 0.93105 0.81908 0.77268 0.80322 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 10.24 71.98 0.74 -3.96 16 2 C 0.10 3.89 6.09 86.38 0.53 4.41 16 3 N -0.58 -25.80 2.47 -829.02 -2.05 -27.84 16 4 C 0.26 13.09 4.75 85.63 0.41 13.50 16 5 C -0.48 -26.32 7.43 25.60 0.19 -26.13 16 6 H 0.03 1.96 7.81 -2.91 -0.02 1.94 16 7 C 0.03 1.69 5.46 84.66 0.46 2.15 16 8 N -0.92 -52.75 13.29 21.45 0.28 -52.47 16 9 Si 0.93 44.50 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 13 C 0.55 24.00 7.61 86.94 0.66 24.66 16 14 O -0.58 -25.25 15.93 -3.67 -0.06 -25.31 16 15 C 0.07 2.84 6.56 41.97 0.28 3.11 16 16 C -0.13 -3.72 9.61 22.57 0.22 -3.50 16 17 C -0.01 -0.28 9.94 22.77 0.23 -0.05 16 18 C -0.23 -6.06 5.89 -20.00 -0.12 -6.18 16 19 C 0.40 8.16 11.49 70.22 0.81 8.97 16 20 O -0.50 -15.72 17.19 -2.87 -0.05 -15.77 16 21 C 0.12 4.68 10.76 85.18 0.92 5.60 16 22 N -0.42 -18.69 4.76 -183.68 -0.87 -19.57 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 2.88 8.09 -2.39 -0.02 2.86 16 27 H 0.07 2.71 7.44 -2.39 -0.02 2.69 16 28 H 0.01 0.43 8.03 -2.39 -0.02 0.41 16 29 H 0.05 2.78 5.73 -2.39 -0.01 2.77 16 30 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 31 H 0.16 4.01 7.64 -2.91 -0.02 3.99 16 32 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.14 5.88 7.65 -2.91 -0.02 5.85 16 Total: -1.00 -73.09 301.57 5.70 -67.39 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.11 Total: 4.46 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 5.31 Total: 22.58 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -2.64 Total: -99.87 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.11 Total: -41.09 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -73.09 5.70 -67.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463972.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.325 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds