Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46930 * 2 1 4 4 C 1.46490 * 120.00263 * 278.26325 * 3 2 1 5 5 C 1.50701 * 109.47269 * 269.99766 * 4 3 2 6 6 H 1.07999 * 120.00065 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00268 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99449 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00174 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47260 * 59.99912 * 9 7 5 11 11 H 1.48499 * 109.47436 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46995 * 300.00171 * 9 7 5 13 13 C 1.34781 * 119.99761 * 98.26135 * 3 2 1 14 14 O 1.21545 * 120.00320 * 186.23070 * 13 3 2 15 15 C 1.47857 * 119.99860 * 6.22982 * 13 3 2 16 16 C 1.39711 * 120.47942 * 330.66296 * 15 13 3 17 17 N 1.31759 * 120.94562 * 179.97438 * 16 15 13 18 18 C 1.31719 * 122.06798 * 359.97438 * 17 16 15 19 19 C 1.39904 * 120.84610 * 359.97438 * 18 17 16 20 20 C 1.47172 * 120.52157 * 180.02562 * 19 18 17 21 21 O 1.21257 * 120.00222 * 180.02562 * 20 19 18 22 22 C 1.39661 * 120.47580 * 150.61942 * 15 13 3 23 23 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47350 * 299.99595 * 1 2 3 25 25 H 1.09001 * 109.46796 * 59.99925 * 1 2 3 26 26 H 1.08999 * 109.47350 * 240.00405 * 2 1 3 27 27 H 1.08994 * 109.47046 * 119.99778 * 2 1 3 28 28 H 1.09007 * 109.47164 * 30.00124 * 4 3 2 29 29 H 1.09008 * 109.47416 * 149.99663 * 4 3 2 30 30 H 0.97012 * 119.99535 * 180.02562 * 8 7 5 31 31 H 1.07999 * 119.53052 * 359.97438 * 16 15 13 32 32 H 1.08000 * 119.57750 * 180.02562 * 18 17 16 33 33 H 1.08006 * 119.99875 * 359.97438 * 20 19 18 34 34 H 1.07997 * 120.93753 * 0.04366 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0905 2.1327 -1.2554 5 6 3.4410 1.9218 -1.8901 6 1 4.1722 1.2907 -1.4069 7 6 3.7428 2.5335 -3.0883 8 7 2.8521 3.3016 -3.6770 9 14 5.4164 2.2715 -3.8754 10 1 5.6128 0.8257 -4.1514 11 1 5.4893 3.0323 -5.1486 12 1 6.4776 2.7477 -2.9522 13 6 2.4010 1.9607 1.1552 14 8 2.6982 3.1391 1.1748 15 6 2.4594 1.1628 2.3986 16 6 1.6058 0.0720 2.5813 17 7 1.6503 -0.6456 3.6855 18 6 2.4920 -0.3751 4.6619 19 6 3.3838 0.6983 4.5635 20 6 4.3216 0.9938 5.6585 21 8 5.0902 1.9268 5.5635 22 6 3.3692 1.4882 3.4070 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3118 1.7832 -1.9334 29 1 1.9462 3.1939 -1.0526 30 1 3.0643 3.7317 -4.5203 31 1 0.8994 -0.1868 1.8065 32 1 2.4943 -0.9904 5.5495 33 1 4.3247 0.3800 6.5472 34 1 4.0432 2.3250 3.2978 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = -3.509235 kcal Electronic energy + Delta-G solvation = -19268.537693 eV Core-core repulsion = 16168.190366 eV Total energy + Delta-G solvation = -3100.347327 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90598 -39.19849 -38.30469 -35.78326 -33.13554 -32.63646 -31.77953 -30.37876 -27.41769 -25.58264 -24.59914 -23.18455 -22.49848 -21.64785 -19.15978 -17.55264 -17.20708 -17.08422 -16.48502 -15.63246 -15.27599 -14.96931 -14.75047 -14.38951 -14.17055 -13.85104 -13.54600 -13.22605 -13.15139 -12.49253 -12.13963 -12.00822 -11.71402 -11.27857 -11.00449 -10.83838 -10.61676 -10.49841 -10.20797 -10.00792 -9.76209 -9.68323 -9.28435 -9.04530 -8.48574 -7.82783 -6.10261 -4.15759 0.21869 0.87474 2.15871 3.19951 3.28940 3.33627 3.36771 3.56212 3.84692 3.95408 4.21273 4.39622 4.54351 4.61722 4.75447 4.97970 5.09238 5.15818 5.24420 5.37776 5.41473 5.58318 5.78313 5.86151 5.97019 6.11405 6.29507 6.38688 6.94765 7.13445 7.33933 7.40494 7.59826 7.85160 8.14831 8.21501 8.75188 8.91858 9.49567 10.97788 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021281 B = 0.005659 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.395157 B = 4946.336276 C = 5747.291445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.075 3.925 3 N -0.585 5.585 4 C 0.246 3.754 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.550 3.450 14 O -0.530 6.530 15 C -0.182 4.182 16 C 0.125 3.875 17 N -0.496 5.496 18 C 0.158 3.842 19 C -0.257 4.257 20 C 0.389 3.611 21 O -0.453 6.453 22 C 0.033 3.967 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.198 0.802 32 H 0.168 0.832 33 H 0.113 0.887 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -10.828 14.834 18.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.049 4.049 3 N -0.315 5.315 4 C 0.127 3.873 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.335 3.665 14 O -0.407 6.407 15 C -0.187 4.187 16 C -0.030 4.030 17 N -0.204 5.204 18 C -0.001 4.001 19 C -0.260 4.260 20 C 0.246 3.754 21 O -0.325 6.325 22 C 0.006 3.994 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.213 0.787 32 H 0.185 0.815 33 H 0.129 0.871 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.743 -10.257 14.645 18.267 hybrid contribution 1.410 0.425 -0.711 1.635 sum -2.333 -9.832 13.934 17.212 Atomic orbital electron populations 1.22318 0.96106 1.02329 1.03079 1.22215 0.94015 0.84746 1.03907 1.48172 1.61442 1.13218 1.08706 1.19365 0.97278 0.92766 0.77890 1.21377 0.99724 1.30135 1.05891 0.92474 1.24920 0.97338 0.94773 0.96877 1.69922 1.34445 1.30908 1.17842 0.86545 0.84111 0.78202 0.78515 1.20203 1.21068 1.20147 1.17872 0.78964 0.86897 0.82741 1.90778 1.49150 1.15374 1.85429 1.21372 1.00274 0.99262 0.97788 1.24708 0.95862 0.88237 0.94199 1.67842 1.21874 1.29542 1.01178 1.23262 0.87948 0.92147 0.96703 1.21965 1.03882 1.01047 0.99112 1.23925 0.78870 0.83939 0.88699 1.90574 1.34411 1.27236 1.80302 1.22034 0.92859 0.95336 0.89127 0.91233 0.92409 0.90798 0.89470 0.89735 0.94511 0.93426 0.92548 0.78652 0.81524 0.87115 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.13 37.16 0.34 -1.91 16 2 C 0.07 1.15 5.58 -4.04 -0.02 1.13 16 3 N -0.58 -12.12 2.46 -176.17 -0.43 -12.56 16 4 C 0.25 6.27 5.22 -5.20 -0.03 6.24 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.55 11.63 7.48 -12.32 -0.09 11.54 16 14 O -0.53 -13.48 16.31 5.33 0.09 -13.39 16 15 C -0.18 -3.00 5.60 -104.88 -0.59 -3.59 16 16 C 0.13 1.70 8.67 -17.03 -0.15 1.55 16 17 N -0.50 -5.98 10.33 -12.52 -0.13 -6.11 16 18 C 0.16 1.52 10.95 -16.98 -0.19 1.34 16 19 C -0.26 -2.92 5.88 -104.97 -0.62 -3.53 16 20 C 0.39 3.71 11.48 34.36 0.39 4.10 16 21 O -0.45 -6.45 17.23 5.58 0.10 -6.35 16 22 C 0.03 0.50 9.27 -38.37 -0.36 0.14 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.69 7.07 -51.93 -0.37 0.32 16 25 H 0.07 1.03 7.94 -51.93 -0.41 0.61 16 26 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 27 H 0.09 1.15 4.03 -51.98 -0.21 0.94 16 28 H 0.04 0.93 7.87 -51.92 -0.41 0.53 16 29 H 0.05 1.38 7.35 -51.92 -0.38 1.00 16 30 H 0.26 7.35 8.31 -40.81 -0.34 7.01 16 31 H 0.20 2.41 2.52 -52.49 -0.13 2.28 16 32 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.11 0.47 8.06 -52.48 -0.42 0.05 16 34 H 0.15 2.59 7.64 -52.49 -0.40 2.19 16 LS Contribution 297.50 15.07 4.48 4.48 Total: -1.00 -34.78 297.50 -5.45 -40.23 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -3.55 Total: -1.06 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.72 Total: 3.50 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.17 Total: -44.09 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.18 Total: -19.75 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.78 -5.45 -40.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.724 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds