Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46930 * 2 1 4 4 C 1.46490 * 120.00263 * 278.26325 * 3 2 1 5 5 C 1.50701 * 109.47269 * 269.99766 * 4 3 2 6 6 H 1.07999 * 120.00065 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00268 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99449 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00174 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47260 * 59.99912 * 9 7 5 11 11 H 1.48499 * 109.47436 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46995 * 300.00171 * 9 7 5 13 13 C 1.34781 * 119.99761 * 98.26135 * 3 2 1 14 14 O 1.21545 * 120.00320 * 186.23070 * 13 3 2 15 15 C 1.47857 * 119.99860 * 6.22982 * 13 3 2 16 16 C 1.39711 * 120.47942 * 330.66296 * 15 13 3 17 17 N 1.31759 * 120.94562 * 179.97438 * 16 15 13 18 18 C 1.31719 * 122.06798 * 359.97438 * 17 16 15 19 19 C 1.39904 * 120.84610 * 359.97438 * 18 17 16 20 20 C 1.47172 * 120.52157 * 180.02562 * 19 18 17 21 21 O 1.21257 * 120.00222 * 180.02562 * 20 19 18 22 22 C 1.39661 * 120.47580 * 150.61942 * 15 13 3 23 23 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47350 * 299.99595 * 1 2 3 25 25 H 1.09001 * 109.46796 * 59.99925 * 1 2 3 26 26 H 1.08999 * 109.47350 * 240.00405 * 2 1 3 27 27 H 1.08994 * 109.47046 * 119.99778 * 2 1 3 28 28 H 1.09007 * 109.47164 * 30.00124 * 4 3 2 29 29 H 1.09008 * 109.47416 * 149.99663 * 4 3 2 30 30 H 0.97012 * 119.99535 * 180.02562 * 8 7 5 31 31 H 1.07999 * 119.53052 * 359.97438 * 16 15 13 32 32 H 1.08000 * 119.57750 * 180.02562 * 18 17 16 33 33 H 1.08006 * 119.99875 * 359.97438 * 20 19 18 34 34 H 1.07997 * 120.93753 * 0.04366 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0905 2.1327 -1.2554 5 6 3.4410 1.9218 -1.8901 6 1 4.1722 1.2907 -1.4069 7 6 3.7428 2.5335 -3.0883 8 7 2.8521 3.3016 -3.6770 9 14 5.4164 2.2715 -3.8754 10 1 5.6128 0.8257 -4.1514 11 1 5.4893 3.0323 -5.1486 12 1 6.4776 2.7477 -2.9522 13 6 2.4010 1.9607 1.1552 14 8 2.6982 3.1391 1.1748 15 6 2.4594 1.1628 2.3986 16 6 1.6058 0.0720 2.5813 17 7 1.6503 -0.6456 3.6855 18 6 2.4920 -0.3751 4.6619 19 6 3.3838 0.6983 4.5635 20 6 4.3216 0.9938 5.6585 21 8 5.0902 1.9268 5.5635 22 6 3.3692 1.4882 3.4070 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3118 1.7832 -1.9334 29 1 1.9462 3.1939 -1.0526 30 1 3.0643 3.7317 -4.5203 31 1 0.8994 -0.1868 1.8065 32 1 2.4943 -0.9904 5.5495 33 1 4.3247 0.3800 6.5472 34 1 4.0432 2.3250 3.2978 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930464053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = -28.991615 kcal Electronic energy + Delta-G solvation = -19269.642692 eV Core-core repulsion = 16168.190366 eV Total energy + Delta-G solvation = -3101.452326 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.08005 -40.43117 -39.46213 -37.39482 -35.12640 -33.71726 -33.12979 -31.74852 -29.31526 -26.56166 -26.10541 -24.65379 -23.94138 -22.67854 -20.59936 -18.73499 -18.66997 -18.34528 -18.12047 -17.12997 -16.65941 -16.28042 -16.07820 -15.71828 -15.54564 -15.04396 -14.83881 -14.59422 -14.25453 -14.23173 -13.67762 -13.37060 -13.16811 -13.08460 -12.67467 -12.53784 -12.25209 -12.03841 -11.80388 -11.54817 -11.13050 -10.86130 -10.68596 -10.50555 -10.23563 -9.60563 -8.27678 -6.42838 -0.72989 -0.26011 1.30349 1.33764 1.37744 1.45092 1.77643 2.12003 2.35998 2.69379 3.02124 3.10097 3.29385 3.42476 3.59414 3.71665 3.92062 4.01876 4.16664 4.23873 4.47896 4.54607 4.76039 4.80107 4.87635 4.94989 5.00085 5.15779 5.31898 5.36289 5.47303 5.73900 5.98958 6.42044 6.53622 6.62453 6.65457 7.12940 7.30425 8.79601 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021281 B = 0.005659 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.395157 B = 4946.336276 C = 5747.291445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 N -0.589 5.589 4 C 0.261 3.739 5 C -0.551 4.551 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.924 5.924 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.281 1.281 13 C 0.541 3.459 14 O -0.593 6.593 15 C -0.208 4.208 16 C 0.138 3.862 17 N -0.496 5.496 18 C 0.188 3.812 19 C -0.255 4.255 20 C 0.402 3.598 21 O -0.508 6.508 22 C 0.010 3.990 23 H 0.111 0.889 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.034 0.966 29 H 0.000 1.000 30 H 0.269 0.731 31 H 0.208 0.792 32 H 0.232 0.768 33 H 0.189 0.811 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 -14.492 17.287 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.053 4.053 3 N -0.318 5.318 4 C 0.140 3.860 5 C -0.589 4.589 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.791 3.209 10 H -0.183 1.183 11 H -0.200 1.200 12 H -0.206 1.206 13 C 0.330 3.670 14 O -0.475 6.475 15 C -0.213 4.213 16 C -0.017 4.017 17 N -0.204 5.204 18 C 0.030 3.970 19 C -0.258 4.258 20 C 0.262 3.738 21 O -0.383 6.383 22 C -0.016 4.016 23 H 0.130 0.870 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.052 0.948 29 H 0.018 0.982 30 H 0.078 0.922 31 H 0.223 0.777 32 H 0.249 0.751 33 H 0.205 0.795 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.803 -13.992 17.108 22.426 hybrid contribution 1.383 1.516 -1.344 2.453 sum -2.421 -12.476 15.764 20.249 Atomic orbital electron populations 1.22281 0.93491 1.04839 1.02485 1.22588 0.96118 0.81670 1.04921 1.48161 1.61489 1.15034 1.07152 1.18818 0.96405 0.90894 0.79882 1.21653 1.00545 1.30333 1.06386 0.93034 1.25826 1.01293 0.94268 0.97398 1.70039 1.36458 1.31571 1.18288 0.85485 0.78830 0.79111 0.77509 1.18289 1.20010 1.20644 1.18655 0.77453 0.86641 0.84252 1.90720 1.51899 1.18232 1.86668 1.20928 1.03290 1.00944 0.96124 1.24716 0.94814 0.86901 0.95283 1.68018 1.22492 1.28861 1.01014 1.24248 0.84778 0.90710 0.97285 1.22411 1.04722 1.00561 0.98059 1.24939 0.76369 0.83150 0.89335 1.90589 1.36510 1.29989 1.81188 1.21993 0.92780 0.95753 0.91098 0.87033 0.91733 0.92726 0.90008 0.87164 0.94826 0.98164 0.92226 0.77653 0.75134 0.79547 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 9.13 71.98 0.66 -3.45 16 2 C 0.07 2.10 5.58 86.38 0.48 2.58 16 3 N -0.59 -25.79 2.46 -829.56 -2.04 -27.83 16 4 C 0.26 14.26 5.22 85.64 0.45 14.70 16 5 C -0.55 -32.21 9.39 25.60 0.24 -31.97 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.69 5.46 84.65 0.46 1.15 16 8 N -0.92 -56.08 13.29 21.45 0.28 -55.80 16 9 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 10 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 C 0.54 24.54 7.48 86.79 0.65 25.19 16 14 O -0.59 -33.15 16.31 -3.86 -0.06 -33.21 16 15 C -0.21 -7.00 5.60 -20.03 -0.11 -7.12 16 16 C 0.14 3.46 8.67 85.06 0.74 4.20 16 17 N -0.50 -9.75 10.33 -193.52 -2.00 -11.75 16 18 C 0.19 2.55 10.95 85.11 0.93 3.48 16 19 C -0.25 -5.02 5.88 -20.09 -0.12 -5.14 16 20 C 0.40 6.13 11.48 70.17 0.81 6.94 16 21 O -0.51 -13.97 17.23 -2.96 -0.05 -14.02 16 22 C 0.01 0.32 9.27 23.06 0.21 0.53 16 23 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.06 1.45 7.07 -2.39 -0.02 1.44 16 25 H 0.05 1.52 7.94 -2.39 -0.02 1.50 16 26 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 27 H 0.11 2.82 4.03 -2.44 -0.01 2.81 16 28 H 0.03 1.82 7.87 -2.38 -0.02 1.81 16 29 H 0.00 0.01 7.35 -2.38 -0.02 0.00 16 30 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 31 H 0.21 4.59 2.52 -2.91 -0.01 4.59 16 32 H 0.23 0.21 8.06 -2.91 -0.02 0.19 16 33 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 34 H 0.12 4.49 7.64 -2.91 -0.02 4.47 16 Total: -1.00 -85.00 297.50 4.68 -80.31 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.13 Total: 3.86 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 5.40 Total: 11.10 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -3.76 Total: -95.38 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.11 Total: -47.23 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -85.00 4.68 -80.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.321 kcal (2) G-P(sol) polarization free energy of solvation -84.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds