Wall clock time and date at job start Mon Mar 30 2020 04:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00166 * 2 1 4 4 O 1.21350 * 119.99679 * 359.97438 * 3 2 1 5 5 C 1.49448 * 120.00258 * 179.97438 * 3 2 1 6 6 O 1.21355 * 119.99656 * 0.02562 * 5 3 2 7 7 N 1.34776 * 120.00258 * 180.02562 * 5 3 2 8 8 C 1.46499 * 120.00166 * 180.02562 * 7 5 3 9 9 C 1.50696 * 109.47459 * 179.97438 * 8 7 5 10 10 C 1.38629 * 119.75027 * 269.72930 * 9 8 7 11 11 C 1.37616 * 120.24726 * 179.71859 * 10 9 8 12 12 C 1.40713 * 119.74816 * 0.56746 * 11 10 9 13 13 C 1.41394 * 120.25067 * 179.67957 * 12 11 10 14 14 H 1.07997 * 120.00652 * 204.40025 * 13 12 11 15 15 C 1.39949 * 119.99607 * 24.40527 * 13 12 11 16 16 N 1.30829 * 120.00062 * 17.85475 * 15 13 12 17 17 Si 1.86798 * 120.00043 * 197.85528 * 15 13 12 18 18 H 1.48500 * 109.46985 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47140 * 119.99988 * 17 15 13 20 20 H 1.48498 * 109.47251 * 239.99840 * 17 15 13 21 21 C 1.40718 * 119.50848 * 359.70557 * 12 11 10 22 22 C 1.37619 * 119.74534 * 0.02562 * 21 12 11 23 23 H 1.09003 * 109.47274 * 300.00138 * 1 2 3 24 24 H 1.09005 * 109.46666 * 60.00426 * 1 2 3 25 25 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 26 26 H 0.97000 * 119.99912 * 179.97438 * 2 1 3 27 27 H 0.97000 * 119.99922 * 359.97438 * 7 5 3 28 28 H 1.09005 * 109.46964 * 59.99422 * 8 7 5 29 29 H 1.09001 * 109.47156 * 300.00127 * 8 7 5 30 30 H 1.08005 * 119.87755 * 359.97064 * 10 9 8 31 31 H 1.08008 * 120.12622 * 180.27959 * 11 10 9 32 32 H 0.96994 * 119.99970 * 179.97438 * 16 15 13 33 33 H 1.07995 * 120.12697 * 179.97438 * 21 12 11 34 34 H 1.08000 * 119.87543 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5321 2.2181 -0.0005 5 6 3.6334 1.1672 0.0006 6 8 4.2401 0.1162 0.0006 7 7 4.3073 2.3344 0.0011 8 6 5.7723 2.3344 0.0011 9 6 6.2747 3.7551 0.0011 10 6 6.5094 4.4018 -1.2025 11 6 6.9627 5.7011 -1.2144 12 6 7.1994 6.3692 0.0011 13 6 7.6716 7.7019 0.0012 14 1 8.2161 8.0820 0.8530 15 6 7.4334 8.5287 -1.1025 16 7 6.5019 8.2149 -1.9660 17 14 8.4453 10.0804 -1.3429 18 1 9.4270 10.2075 -0.2359 19 1 9.1677 10.0045 -2.6382 20 1 7.5462 11.2622 -1.3461 21 6 6.9631 5.7010 1.2168 22 6 6.5044 4.4035 1.2048 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.9500 -0.8401 0.0004 27 1 3.8223 3.1744 0.0007 28 1 6.1356 1.8208 -0.8891 29 1 6.1356 1.8201 0.8908 30 1 6.3319 3.8853 -2.1343 31 1 7.1406 6.2045 -2.1533 32 1 6.3366 8.7882 -2.7307 33 1 7.1417 6.2041 2.1555 34 1 6.3220 3.8888 2.1365 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583263715.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:33 Heat of formation + Delta-G solvation = -59.829633 kcal Electronic energy + Delta-G solvation = -18427.980344 eV Core-core repulsion = 15325.190781 eV Total energy + Delta-G solvation = -3102.789563 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.44456 -38.48127 -37.62900 -35.32707 -34.48460 -33.41003 -30.44867 -29.38419 -28.04679 -26.91213 -24.31978 -22.66234 -21.10299 -20.29077 -20.17865 -18.64928 -17.40941 -16.73029 -15.92732 -15.52280 -15.38025 -15.18932 -14.55788 -14.22842 -13.84059 -13.67713 -13.37256 -12.91946 -12.56591 -12.54466 -12.07004 -12.02149 -11.73293 -11.58300 -11.18240 -11.04936 -10.75145 -10.47249 -9.79004 -9.55157 -9.48625 -9.43482 -9.23702 -8.85424 -7.59114 -7.47485 -6.88373 -4.48049 1.53412 2.34279 2.73014 2.97546 3.02148 3.06683 3.10204 3.34150 3.84628 3.90427 4.48866 4.71896 4.94143 5.23098 5.50786 5.57664 5.71149 5.80981 6.04970 6.14869 6.22573 6.31145 6.56184 6.85390 6.96189 6.99107 7.15997 7.24456 7.49579 7.52667 7.73077 7.87434 7.94382 7.98539 8.16566 8.19500 8.52424 8.77248 8.84908 10.05458 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036809 B = 0.003673 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.507508 B = 7621.645377 C = 7980.512038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.711 5.711 3 C 0.504 3.496 4 O -0.517 6.517 5 C 0.498 3.502 6 O -0.537 6.537 7 N -0.682 5.682 8 C 0.182 3.818 9 C -0.251 4.251 10 C -0.079 4.079 11 C -0.169 4.169 12 C 0.118 3.882 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.785 5.785 17 Si 0.909 3.091 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.229 4.229 22 C -0.067 4.067 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.413 0.587 27 H 0.414 0.586 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.282 0.718 33 H 0.094 0.906 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 -10.433 1.177 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.365 5.365 3 C 0.285 3.715 4 O -0.391 6.391 5 C 0.278 3.722 6 O -0.416 6.416 7 N -0.333 5.333 8 C 0.061 3.939 9 C -0.253 4.253 10 C -0.098 4.098 11 C -0.189 4.189 12 C 0.115 3.885 13 C -0.485 4.485 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.409 5.409 17 Si 0.734 3.266 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.249 4.249 22 C -0.086 4.086 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.249 0.751 27 H 0.250 0.750 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.977 -10.307 0.963 12.484 hybrid contribution 0.242 0.756 -0.198 0.818 sum -6.735 -9.551 0.765 11.712 Atomic orbital electron populations 1.21647 0.78698 1.02665 1.02776 1.45557 1.07919 1.08989 1.73990 1.20458 0.89070 0.84402 0.77593 1.90783 1.70031 1.31033 1.47294 1.20070 0.87816 0.85225 0.79124 1.90722 1.69771 1.31135 1.49969 1.46505 1.08859 1.08229 1.69732 1.20132 0.76683 0.95863 1.01206 1.18921 1.17171 0.95235 0.94005 1.20557 0.99010 0.95090 0.95144 1.21309 1.05687 0.93090 0.98795 1.17688 0.87311 0.92577 0.90954 1.19709 1.30932 0.95934 1.01919 0.90163 1.25973 0.93721 0.99957 0.94755 1.69828 1.23548 1.36851 1.10709 0.86238 0.80482 0.80492 0.79437 1.18294 1.19591 1.19877 1.20973 1.11131 0.95708 0.97091 1.20408 0.98284 0.94657 0.95245 0.91769 0.91747 0.90179 0.75110 0.74955 0.91691 0.91733 0.89318 0.86315 0.90676 0.88813 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 59.85 0.64 1.32 16 2 N -0.71 -7.58 5.71 -67.52 -0.39 -7.96 16 3 C 0.50 7.31 7.89 -11.59 -0.09 7.22 16 4 O -0.52 -8.82 16.48 5.50 0.09 -8.73 16 5 C 0.50 7.96 7.89 -11.59 -0.09 7.87 16 6 O -0.54 -9.26 16.48 5.49 0.09 -9.17 16 7 N -0.68 -11.47 5.54 -61.91 -0.34 -11.81 16 8 C 0.18 3.22 5.79 -5.20 -0.03 3.19 16 9 C -0.25 -5.18 5.27 -104.33 -0.55 -5.73 16 10 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 11 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 12 C 0.12 3.02 5.57 -106.82 -0.60 2.42 16 13 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 15 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 16 N -0.78 -19.65 10.95 55.55 0.61 -19.04 16 17 Si 0.91 18.05 29.60 -169.99 -5.03 13.02 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.23 -5.41 9.80 -38.87 -0.38 -5.79 16 22 C -0.07 -1.43 9.67 -39.66 -0.38 -1.81 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.41 3.73 8.30 -40.82 -0.34 3.40 16 27 H 0.41 7.15 7.94 -40.82 -0.32 6.82 16 28 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 29 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 32 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 33 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -28.60 304.57 -6.93 -35.52 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -3.91 Total: 11.92 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.63 Total: -8.33 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: -0.12 Total: -38.82 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.18 Total: -17.89 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.60 -6.93 -35.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583263715.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.309 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds