Wall clock time and date at job start Mon Mar 30 2020 04:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00166 * 2 1 4 4 O 1.21350 * 119.99679 * 359.97438 * 3 2 1 5 5 C 1.49448 * 120.00258 * 179.97438 * 3 2 1 6 6 O 1.21355 * 119.99656 * 0.02562 * 5 3 2 7 7 N 1.34776 * 120.00258 * 180.02562 * 5 3 2 8 8 C 1.46499 * 120.00166 * 180.02562 * 7 5 3 9 9 C 1.50696 * 109.47459 * 179.97438 * 8 7 5 10 10 C 1.38629 * 119.75027 * 269.72930 * 9 8 7 11 11 C 1.37616 * 120.24726 * 179.71859 * 10 9 8 12 12 C 1.40713 * 119.74816 * 0.56746 * 11 10 9 13 13 C 1.41394 * 120.25067 * 179.67957 * 12 11 10 14 14 H 1.07997 * 120.00652 * 204.40025 * 13 12 11 15 15 C 1.39949 * 119.99607 * 24.40527 * 13 12 11 16 16 N 1.30829 * 120.00062 * 17.85475 * 15 13 12 17 17 Si 1.86798 * 120.00043 * 197.85528 * 15 13 12 18 18 H 1.48500 * 109.46985 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47140 * 119.99988 * 17 15 13 20 20 H 1.48498 * 109.47251 * 239.99840 * 17 15 13 21 21 C 1.40718 * 119.50848 * 359.70557 * 12 11 10 22 22 C 1.37619 * 119.74534 * 0.02562 * 21 12 11 23 23 H 1.09003 * 109.47274 * 300.00138 * 1 2 3 24 24 H 1.09005 * 109.46666 * 60.00426 * 1 2 3 25 25 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 26 26 H 0.97000 * 119.99912 * 179.97438 * 2 1 3 27 27 H 0.97000 * 119.99922 * 359.97438 * 7 5 3 28 28 H 1.09005 * 109.46964 * 59.99422 * 8 7 5 29 29 H 1.09001 * 109.47156 * 300.00127 * 8 7 5 30 30 H 1.08005 * 119.87755 * 359.97064 * 10 9 8 31 31 H 1.08008 * 120.12622 * 180.27959 * 11 10 9 32 32 H 0.96994 * 119.99970 * 179.97438 * 16 15 13 33 33 H 1.07995 * 120.12697 * 179.97438 * 21 12 11 34 34 H 1.08000 * 119.87543 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5321 2.2181 -0.0005 5 6 3.6334 1.1672 0.0006 6 8 4.2401 0.1162 0.0006 7 7 4.3073 2.3344 0.0011 8 6 5.7723 2.3344 0.0011 9 6 6.2747 3.7551 0.0011 10 6 6.5094 4.4018 -1.2025 11 6 6.9627 5.7011 -1.2144 12 6 7.1994 6.3692 0.0011 13 6 7.6716 7.7019 0.0012 14 1 8.2161 8.0820 0.8530 15 6 7.4334 8.5287 -1.1025 16 7 6.5019 8.2149 -1.9660 17 14 8.4453 10.0804 -1.3429 18 1 9.4270 10.2075 -0.2359 19 1 9.1677 10.0045 -2.6382 20 1 7.5462 11.2622 -1.3461 21 6 6.9631 5.7010 1.2168 22 6 6.5044 4.4035 1.2048 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.9500 -0.8401 0.0004 27 1 3.8223 3.1744 0.0007 28 1 6.1356 1.8208 -0.8891 29 1 6.1356 1.8201 0.8908 30 1 6.3319 3.8853 -2.1343 31 1 7.1406 6.2045 -2.1533 32 1 6.3366 8.7882 -2.7307 33 1 7.1417 6.2041 2.1555 34 1 6.3220 3.8888 2.1365 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583263715.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:33 Heat of formation + Delta-G solvation = -79.832312 kcal Electronic energy + Delta-G solvation = -18428.847725 eV Core-core repulsion = 15325.190781 eV Total energy + Delta-G solvation = -3103.656944 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.65423 -39.85520 -39.24541 -36.64215 -35.79925 -34.98468 -32.15157 -31.18884 -29.26335 -28.24610 -25.84609 -23.95380 -22.91463 -21.86748 -21.43864 -19.88639 -19.25204 -17.92416 -17.26654 -17.06788 -16.58251 -16.48744 -15.88013 -15.75485 -15.43329 -15.14622 -14.77253 -14.23084 -13.94317 -13.83529 -13.56324 -13.43276 -13.13327 -12.88509 -12.81523 -12.72189 -12.50257 -12.10477 -11.52698 -11.30820 -11.07693 -10.77247 -10.36615 -10.20952 -9.41021 -9.30049 -8.68086 -6.38276 0.33286 0.77623 1.13093 1.36403 1.39574 1.53457 1.60124 2.13292 2.19487 2.60849 2.88559 3.48488 3.73532 4.11727 4.28926 4.41011 4.50002 4.59357 4.63959 4.72425 4.91410 5.03618 5.13427 5.15306 5.19681 5.34319 5.42106 5.67411 5.85469 5.97763 6.07739 6.17592 6.34747 6.38146 6.66708 6.73213 6.90591 6.94270 6.99431 8.28484 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036809 B = 0.003673 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.507508 B = 7621.645377 C = 7980.512038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.692 5.692 3 C 0.504 3.496 4 O -0.548 6.548 5 C 0.502 3.498 6 O -0.548 6.548 7 N -0.686 5.686 8 C 0.190 3.810 9 C -0.235 4.235 10 C -0.081 4.081 11 C -0.193 4.193 12 C 0.086 3.914 13 C -0.495 4.495 14 H 0.077 0.923 15 C 0.035 3.965 16 N -0.819 5.819 17 Si 0.982 3.018 18 H -0.258 1.258 19 H -0.264 1.264 20 H -0.266 1.266 21 C -0.245 4.245 22 C -0.066 4.066 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.120 0.880 26 H 0.423 0.577 27 H 0.412 0.588 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.289 0.711 33 H 0.099 0.901 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 -11.967 1.443 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.345 5.345 3 C 0.285 3.715 4 O -0.426 6.426 5 C 0.282 3.718 6 O -0.427 6.427 7 N -0.337 5.337 8 C 0.068 3.932 9 C -0.236 4.236 10 C -0.100 4.100 11 C -0.213 4.213 12 C 0.084 3.916 13 C -0.524 4.524 14 H 0.095 0.905 15 C -0.180 4.180 16 N -0.444 5.444 17 Si 0.803 3.197 18 H -0.181 1.181 19 H -0.189 1.189 20 H -0.191 1.191 21 C -0.264 4.264 22 C -0.085 4.085 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.139 0.861 26 H 0.260 0.740 27 H 0.248 0.752 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.686 -11.903 1.236 14.222 hybrid contribution 0.354 1.001 -0.243 1.089 sum -7.331 -10.902 0.992 13.176 Atomic orbital electron populations 1.21926 0.76614 1.05288 1.02445 1.45599 1.09205 1.08146 1.71556 1.20181 0.88237 0.85104 0.78002 1.90780 1.70176 1.32228 1.49437 1.20282 0.88626 0.84549 0.78296 1.90717 1.70253 1.31341 1.50373 1.46337 1.08423 1.08627 1.70270 1.20011 0.77267 0.93655 1.02221 1.19201 1.14919 0.96403 0.93116 1.20788 0.98199 0.94295 0.96748 1.21271 1.07624 0.94355 0.98033 1.18028 0.88340 0.93284 0.91974 1.19933 1.32658 0.96747 1.03057 0.90485 1.26786 0.94301 1.02982 0.93980 1.69875 1.24731 1.38421 1.11396 0.85153 0.78757 0.76413 0.79376 1.18131 1.18860 1.19067 1.21174 1.11668 0.96880 0.96712 1.20719 0.97059 0.93922 0.96808 0.92031 0.92121 0.86130 0.73951 0.75171 0.91009 0.90480 0.87532 0.88087 0.89992 0.88323 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.70 127.77 1.37 2.40 16 2 N -0.69 -12.97 5.71 -485.88 -2.77 -15.74 16 3 C 0.50 13.75 7.89 87.27 0.69 14.44 16 4 O -0.55 -18.15 16.48 -3.25 -0.05 -18.20 16 5 C 0.50 15.06 7.89 87.27 0.69 15.75 16 6 O -0.55 -17.54 16.48 -3.26 -0.05 -17.60 16 7 N -0.69 -21.84 5.54 -468.14 -2.59 -24.44 16 8 C 0.19 6.27 5.79 85.63 0.50 6.77 16 9 C -0.23 -9.36 5.27 -19.68 -0.10 -9.47 16 10 C -0.08 -3.61 9.67 22.22 0.21 -3.39 16 11 C -0.19 -9.93 8.70 22.73 0.20 -9.73 16 12 C 0.09 4.57 5.57 -21.29 -0.12 4.45 16 13 C -0.49 -26.30 9.05 23.46 0.21 -26.08 16 14 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 15 C 0.04 1.75 5.14 85.26 0.44 2.19 16 16 N -0.82 -42.22 10.95 21.83 0.24 -41.98 16 17 Si 0.98 37.58 29.60 68.60 2.03 39.61 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 21 C -0.24 -11.66 9.80 22.73 0.22 -11.44 16 22 C -0.07 -2.75 9.67 22.22 0.21 -2.54 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.42 6.37 8.30 -92.71 -0.77 5.60 16 27 H 0.41 13.75 7.94 -92.71 -0.74 13.01 16 28 H 0.07 2.31 8.08 -2.38 -0.02 2.29 16 29 H 0.08 2.40 8.08 -2.39 -0.02 2.38 16 30 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 32 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 33 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -62.51 304.57 0.95 -61.56 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: -0.36 Total: 33.44 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 4.52 Total: -16.66 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -5.13 Total: -82.16 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.11 Total: -35.80 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -62.51 0.95 -61.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583263715.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.271 kcal (2) G-P(sol) polarization free energy of solvation -62.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds