Wall clock time and date at job start Mon Mar 30 2020 04:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46905 * 111.00222 * 2 1 4 4 H 1.08994 * 109.46775 * 324.99967 * 3 2 1 5 5 C 1.52999 * 109.47246 * 85.00278 * 3 2 1 6 6 C 1.52994 * 109.47359 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47112 * 300.00253 * 6 5 3 8 8 C 1.52992 * 109.47448 * 59.99720 * 7 6 5 9 9 H 1.08999 * 109.47512 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46966 * 59.99909 * 8 7 6 11 11 S 1.65606 * 120.00055 * 95.00305 * 10 8 7 12 12 O 1.42105 * 106.40008 * 311.45637 * 11 10 8 13 13 O 1.42098 * 106.40370 * 178.53822 * 11 10 8 14 14 C 1.76193 * 107.21910 * 64.99793 * 11 10 8 15 15 H 1.08002 * 120.00351 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00314 * 180.02562 * 14 11 10 17 17 N 1.31506 * 120.00315 * 180.02562 * 16 14 11 18 18 Si 1.86797 * 119.99549 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.47295 * 90.00054 * 18 16 14 20 20 H 1.48505 * 109.47129 * 210.00207 * 18 16 14 21 21 H 1.48504 * 109.47322 * 330.00304 * 18 16 14 22 22 C 1.52994 * 109.47192 * 300.00230 * 8 7 6 23 23 H 1.09006 * 109.47058 * 300.00325 * 1 2 3 24 24 H 1.09001 * 109.47559 * 59.99413 * 1 2 3 25 25 H 1.08996 * 109.47570 * 180.02562 * 1 2 3 26 26 H 1.00906 * 111.00336 * 123.95365 * 2 1 3 27 27 H 1.09003 * 109.46790 * 300.00597 * 5 3 2 28 28 H 1.08998 * 109.46903 * 59.99712 * 5 3 2 29 29 H 1.09003 * 109.46767 * 59.99912 * 6 5 3 30 30 H 1.09004 * 109.47161 * 179.97438 * 6 5 3 31 31 H 1.08994 * 109.46966 * 299.99250 * 7 6 5 32 32 H 1.09010 * 109.46763 * 180.02562 * 7 6 5 33 33 H 0.97002 * 120.00335 * 275.00344 * 10 8 7 34 34 H 0.96999 * 119.99997 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.47510 * 180.02562 * 22 8 7 36 36 H 1.08998 * 109.47223 * 299.99756 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3398 2.0123 -0.5894 5 6 2.0609 1.8926 1.4370 6 6 2.6099 3.3207 1.4371 7 6 4.0132 3.3277 0.8276 8 6 3.9478 2.8066 -0.6094 9 1 4.9474 2.8120 -1.0438 10 7 3.0669 3.6683 -1.4017 11 16 3.7063 4.9049 -2.2987 12 8 4.5885 5.6111 -1.4370 13 8 2.6148 5.5212 -2.9680 14 6 4.7102 4.1765 -3.5501 15 1 4.8047 3.1023 -3.6095 16 6 5.3753 4.9779 -4.4537 17 7 6.1242 4.4343 -5.3881 18 14 5.2114 6.8359 -4.3516 19 1 6.2731 7.3786 -3.4664 20 1 5.3520 7.4207 -5.7094 21 1 3.8786 7.1856 -3.7976 22 6 3.3988 1.3785 -0.6095 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8306 -0.5261 0.7814 27 1 1.0612 1.8871 1.8714 28 1 2.7166 1.2517 2.0264 29 1 1.9545 3.9619 0.8475 30 1 2.6561 3.6922 2.4608 31 1 4.6685 2.6866 1.4171 32 1 4.4044 4.3452 0.8281 33 1 2.1091 3.5146 -1.4009 34 1 6.5923 4.9981 -6.0235 35 1 3.3526 1.0070 -1.6331 36 1 4.0541 0.7373 -0.0200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721909394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:57 Heat of formation + Delta-G solvation = -94.661427 kcal Electronic energy + Delta-G solvation = -19051.400980 eV Core-core repulsion = 16082.544949 eV Total energy + Delta-G solvation = -2968.856031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.25165 -35.68295 -35.28334 -34.36858 -33.00317 -32.49086 -29.73185 -28.53609 -26.36571 -24.78480 -22.39525 -21.58414 -19.74847 -18.91222 -17.33320 -16.75459 -15.98647 -15.72800 -14.88340 -14.79611 -14.36554 -14.04610 -13.73380 -13.57385 -13.28495 -12.83964 -12.74943 -12.41465 -12.30136 -11.91106 -11.71222 -11.38023 -11.24963 -11.08291 -10.77274 -10.62392 -10.53003 -10.43828 -10.36505 -9.98290 -9.74526 -9.18173 -9.16758 -8.57576 -8.40393 -6.77230 -5.30360 2.14822 3.09438 3.19893 3.29353 3.97933 4.12410 4.39429 4.63404 4.77013 4.84999 5.11679 5.22280 5.28339 5.35233 5.40180 5.43861 5.57900 5.68649 5.72198 5.75153 5.80294 5.91796 6.08844 6.13285 6.20143 6.24761 6.41036 6.45974 6.65015 6.81965 6.97909 7.31180 7.51049 7.80077 8.25037 8.74328 10.35158 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032684 B = 0.006523 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.489594 B = 4291.253608 C = 4535.269038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.689 5.689 3 C 0.084 3.916 4 H 0.079 0.921 5 C -0.146 4.146 6 C -0.113 4.113 7 C -0.140 4.140 8 C 0.161 3.839 9 H 0.095 0.905 10 N -1.117 6.117 11 S 2.675 3.325 12 O -1.011 7.011 13 O -1.012 7.012 14 C -1.016 5.016 15 H 0.122 0.878 16 C 0.153 3.847 17 N -0.824 5.824 18 Si 0.802 3.198 19 H -0.247 1.247 20 H -0.256 1.256 21 H -0.221 1.221 22 C -0.111 4.111 23 H 0.020 0.980 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.339 0.661 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.402 0.598 34 H 0.280 0.720 35 H 0.079 0.921 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 -6.956 12.193 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.318 5.318 3 C -0.026 4.026 4 H 0.097 0.903 5 C -0.185 4.185 6 C -0.152 4.152 7 C -0.179 4.179 8 C 0.053 3.947 9 H 0.113 0.887 10 N -0.872 5.872 11 S 2.777 3.223 12 O -1.001 7.001 13 O -1.003 7.003 14 C -1.150 5.150 15 H 0.140 0.860 16 C -0.066 4.066 17 N -0.453 5.453 18 Si 0.622 3.378 19 H -0.170 1.170 20 H -0.180 1.180 21 H -0.143 1.143 22 C -0.151 4.151 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.156 0.844 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.837 -6.095 11.507 14.707 hybrid contribution -0.280 0.364 0.437 0.634 sum -7.116 -5.731 11.944 15.038 Atomic orbital electron populations 1.22218 0.88151 1.01527 1.00430 1.60519 1.07489 1.14120 1.49674 1.21645 0.97192 0.88702 0.95026 0.90286 1.22259 1.00512 0.97971 0.97761 1.21409 0.97452 0.95829 1.00473 1.22098 0.96618 1.03092 0.96100 1.20614 0.94140 0.89062 0.90895 0.88734 1.55600 1.16308 1.51627 1.63708 1.01336 0.74278 0.72344 0.74373 1.93402 1.66606 1.71804 1.68280 1.93467 1.56448 1.75280 1.75082 1.30497 1.46002 1.06815 1.31680 0.86027 1.24427 0.90818 0.99133 0.92260 1.69990 1.24235 1.37328 1.13767 0.87863 0.83699 0.85070 0.81178 1.17034 1.18008 1.14274 1.21777 0.95006 0.95922 1.02382 0.96183 0.91579 0.91737 0.84405 0.92659 0.91859 0.91727 0.92303 0.91474 0.90038 0.76604 0.90971 0.90217 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.50 60.06 0.63 0.88 16 2 N -0.69 -7.45 6.60 -114.01 -0.75 -8.20 16 3 C 0.08 1.01 2.28 -67.71 -0.15 0.85 16 4 H 0.08 1.02 6.16 -51.93 -0.32 0.70 16 5 C -0.15 -1.56 5.17 -26.73 -0.14 -1.69 16 6 C -0.11 -1.41 5.77 -26.73 -0.15 -1.56 16 7 C -0.14 -2.01 5.64 -26.74 -0.15 -2.16 16 8 C 0.16 2.62 2.98 -67.94 -0.20 2.41 16 9 H 0.09 1.67 7.85 -51.93 -0.41 1.26 16 10 N -1.12 -20.82 4.74 -4.90 -0.02 -20.84 16 11 S 2.68 65.94 4.15 -107.50 -0.45 65.50 16 12 O -1.01 -26.39 16.09 -57.17 -0.92 -27.31 16 13 O -1.01 -27.23 16.02 -57.17 -0.92 -28.14 16 14 C -1.02 -28.20 10.11 30.60 0.31 -27.89 16 15 H 0.12 3.40 8.06 -52.49 -0.42 2.97 16 16 C 0.15 4.41 5.47 -17.82 -0.10 4.31 16 17 N -0.82 -23.90 13.96 55.43 0.77 -23.13 16 18 Si 0.80 20.73 26.54 -169.99 -4.51 16.22 16 19 H -0.25 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.22 -5.82 5.61 56.52 0.32 -5.51 16 22 C -0.11 -1.51 5.24 -26.73 -0.14 -1.65 16 23 H 0.02 0.17 7.44 -51.93 -0.39 -0.21 16 24 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.34 3.12 8.56 -39.29 -0.34 2.78 16 27 H 0.05 0.55 7.45 -51.93 -0.39 0.16 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 29 H 0.06 0.86 7.45 -51.93 -0.39 0.48 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.35 7.64 -51.92 -0.40 0.96 16 33 H 0.40 6.60 6.82 -34.47 -0.23 6.37 16 34 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 293.70 15.07 4.43 4.43 Total: -1.00 -32.20 293.70 -7.92 -40.11 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.45 Total: 7.86 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -0.10 Total: -26.49 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.00 Total: -52.17 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -1.84 Total: -55.45 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.51 Total: 16.22 kcal Atomic # 16 Polarization: 65.94 SS G_CDS: -0.45 Total: 65.50 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.20 -7.92 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721909394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.547 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds