Wall clock time and date at job start Mon Mar 30 2020 04:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46905 * 111.00222 * 2 1 4 4 H 1.08994 * 109.46775 * 324.99967 * 3 2 1 5 5 C 1.52999 * 109.47246 * 85.00278 * 3 2 1 6 6 C 1.52994 * 109.47359 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47112 * 300.00253 * 6 5 3 8 8 C 1.52992 * 109.47448 * 59.99720 * 7 6 5 9 9 H 1.08999 * 109.47512 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46966 * 59.99909 * 8 7 6 11 11 S 1.65606 * 120.00055 * 95.00305 * 10 8 7 12 12 O 1.42105 * 106.40008 * 311.45637 * 11 10 8 13 13 O 1.42098 * 106.40370 * 178.53822 * 11 10 8 14 14 C 1.76193 * 107.21910 * 64.99793 * 11 10 8 15 15 H 1.08002 * 120.00351 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00314 * 180.02562 * 14 11 10 17 17 N 1.31506 * 120.00315 * 180.02562 * 16 14 11 18 18 Si 1.86797 * 119.99549 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.47295 * 90.00054 * 18 16 14 20 20 H 1.48505 * 109.47129 * 210.00207 * 18 16 14 21 21 H 1.48504 * 109.47322 * 330.00304 * 18 16 14 22 22 C 1.52994 * 109.47192 * 300.00230 * 8 7 6 23 23 H 1.09006 * 109.47058 * 300.00325 * 1 2 3 24 24 H 1.09001 * 109.47559 * 59.99413 * 1 2 3 25 25 H 1.08996 * 109.47570 * 180.02562 * 1 2 3 26 26 H 1.00906 * 111.00336 * 123.95365 * 2 1 3 27 27 H 1.09003 * 109.46790 * 300.00597 * 5 3 2 28 28 H 1.08998 * 109.46903 * 59.99712 * 5 3 2 29 29 H 1.09003 * 109.46767 * 59.99912 * 6 5 3 30 30 H 1.09004 * 109.47161 * 179.97438 * 6 5 3 31 31 H 1.08994 * 109.46966 * 299.99250 * 7 6 5 32 32 H 1.09010 * 109.46763 * 180.02562 * 7 6 5 33 33 H 0.97002 * 120.00335 * 275.00344 * 10 8 7 34 34 H 0.96999 * 119.99997 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.47510 * 180.02562 * 22 8 7 36 36 H 1.08998 * 109.47223 * 299.99756 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3398 2.0123 -0.5894 5 6 2.0609 1.8926 1.4370 6 6 2.6099 3.3207 1.4371 7 6 4.0132 3.3277 0.8276 8 6 3.9478 2.8066 -0.6094 9 1 4.9474 2.8120 -1.0438 10 7 3.0669 3.6683 -1.4017 11 16 3.7063 4.9049 -2.2987 12 8 4.5885 5.6111 -1.4370 13 8 2.6148 5.5212 -2.9680 14 6 4.7102 4.1765 -3.5501 15 1 4.8047 3.1023 -3.6095 16 6 5.3753 4.9779 -4.4537 17 7 6.1242 4.4343 -5.3881 18 14 5.2114 6.8359 -4.3516 19 1 6.2731 7.3786 -3.4664 20 1 5.3520 7.4207 -5.7094 21 1 3.8786 7.1856 -3.7976 22 6 3.3988 1.3785 -0.6095 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8306 -0.5261 0.7814 27 1 1.0612 1.8871 1.8714 28 1 2.7166 1.2517 2.0264 29 1 1.9545 3.9619 0.8475 30 1 2.6561 3.6922 2.4608 31 1 4.6685 2.6866 1.4171 32 1 4.4044 4.3452 0.8281 33 1 2.1091 3.5146 -1.4009 34 1 6.5923 4.9981 -6.0235 35 1 3.3526 1.0070 -1.6331 36 1 4.0541 0.7373 -0.0200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721909394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:56 Heat of formation + Delta-G solvation = -121.346824 kcal Electronic energy + Delta-G solvation = -19052.558146 eV Core-core repulsion = 16082.544949 eV Total energy + Delta-G solvation = -2970.013197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33793 -37.64808 -36.47431 -36.41783 -35.17983 -33.69880 -30.79994 -29.70526 -28.53713 -25.62066 -23.47505 -22.58769 -21.32832 -20.54797 -19.23404 -18.65561 -17.42412 -17.07742 -16.58962 -15.87860 -15.76318 -15.42574 -15.25592 -15.06821 -14.80780 -14.44915 -14.05478 -13.62264 -13.42976 -13.27468 -13.11212 -12.95867 -12.67853 -12.59090 -12.54118 -12.47309 -12.17143 -11.78447 -11.62809 -11.42320 -11.33121 -11.13859 -11.00748 -10.19018 -9.24485 -8.95642 -7.50708 0.19963 1.04747 1.14139 1.21491 1.89248 2.42876 2.61074 3.25781 3.36150 3.79531 3.85271 4.08152 4.23502 4.27973 4.29578 4.46075 4.54558 4.61309 4.65488 4.71131 4.74425 4.84435 5.01659 5.08805 5.15030 5.18796 5.28155 5.37652 5.39613 5.50226 5.57193 6.03136 6.12024 6.33188 6.55207 6.59028 8.22088 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032684 B = 0.006523 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.489594 B = 4291.253608 C = 4535.269038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.698 5.698 3 C 0.086 3.914 4 H 0.065 0.935 5 C -0.135 4.135 6 C -0.114 4.114 7 C -0.138 4.138 8 C 0.150 3.850 9 H 0.073 0.927 10 N -1.102 6.102 11 S 2.698 3.302 12 O -1.026 7.026 13 O -1.035 7.035 14 C -1.037 5.037 15 H 0.106 0.894 16 C 0.108 3.892 17 N -0.854 5.854 18 Si 0.825 3.175 19 H -0.238 1.238 20 H -0.221 1.221 21 H -0.231 1.231 22 C -0.105 4.105 23 H 0.030 0.970 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.350 0.650 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.414 0.586 34 H 0.291 0.709 35 H 0.060 0.940 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 -7.501 13.919 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.328 5.328 3 C -0.024 4.024 4 H 0.084 0.916 5 C -0.174 4.174 6 C -0.152 4.152 7 C -0.177 4.177 8 C 0.043 3.957 9 H 0.091 0.909 10 N -0.862 5.862 11 S 2.798 3.202 12 O -1.015 7.015 13 O -1.025 7.025 14 C -1.170 5.170 15 H 0.124 0.876 16 C -0.109 4.109 17 N -0.485 5.485 18 Si 0.642 3.358 19 H -0.161 1.161 20 H -0.143 1.143 21 H -0.153 1.153 22 C -0.144 4.144 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.169 0.831 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.602 -6.652 13.211 16.631 hybrid contribution -0.046 0.419 -0.061 0.426 sum -7.647 -6.233 13.150 16.440 Atomic orbital electron populations 1.22240 0.87248 1.02462 1.00368 1.60437 1.08403 1.13360 1.50585 1.21534 0.95660 0.89456 0.95740 0.91646 1.22176 1.01644 0.96757 0.96865 1.21424 0.95716 0.97054 1.01011 1.22073 0.98641 1.01975 0.95053 1.20891 0.92819 0.90416 0.91573 0.90857 1.55133 1.17256 1.50942 1.62904 1.00486 0.73340 0.72699 0.73707 1.93377 1.67372 1.72692 1.68087 1.93425 1.56645 1.76415 1.76050 1.31019 1.46621 1.06448 1.32871 0.87576 1.25165 0.90880 1.02477 0.92355 1.70014 1.25019 1.38906 1.14532 0.87493 0.83326 0.81671 0.83310 1.16079 1.14333 1.15331 1.21706 0.96733 0.93996 1.01990 0.95136 0.92732 0.90343 0.83098 0.91252 0.90035 0.93096 0.90503 0.88767 0.92646 0.75055 0.89901 0.92144 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.50 127.69 1.34 1.77 16 2 N -0.70 -13.32 6.60 -514.62 -3.40 -16.71 16 3 C 0.09 1.88 2.28 44.91 0.10 1.98 16 4 H 0.07 1.60 6.16 -2.39 -0.01 1.59 16 5 C -0.14 -2.42 5.17 30.59 0.16 -2.27 16 6 C -0.11 -2.54 5.77 30.59 0.18 -2.36 16 7 C -0.14 -3.76 5.64 30.59 0.17 -3.59 16 8 C 0.15 4.81 2.98 44.99 0.13 4.94 16 9 H 0.07 2.64 7.85 -2.39 -0.02 2.62 16 10 N -1.10 -41.11 4.74 -169.41 -0.80 -41.91 16 11 S 2.70 134.14 4.15 -56.49 -0.23 133.91 16 12 O -1.03 -53.75 16.09 -128.00 -2.06 -55.81 16 13 O -1.04 -55.83 16.02 -128.00 -2.05 -57.88 16 14 C -1.04 -58.87 10.11 67.74 0.69 -58.18 16 15 H 0.11 6.16 8.06 -2.91 -0.02 6.14 16 16 C 0.11 6.27 5.47 84.66 0.46 6.73 16 17 N -0.85 -50.07 13.96 21.45 0.30 -49.77 16 18 Si 0.82 41.68 26.54 68.60 1.82 43.50 16 19 H -0.24 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.22 -9.87 7.11 99.48 0.71 -9.17 16 21 H -0.23 -12.02 5.61 99.48 0.56 -11.46 16 22 C -0.10 -2.70 5.24 30.59 0.16 -2.54 16 23 H 0.03 0.44 7.44 -2.38 -0.02 0.42 16 24 H 0.05 1.02 8.06 -2.39 -0.02 1.00 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.35 5.29 8.56 -89.69 -0.77 4.52 16 27 H 0.07 1.10 7.45 -2.39 -0.02 1.08 16 28 H 0.08 1.21 8.13 -2.39 -0.02 1.19 16 29 H 0.05 1.27 7.45 -2.39 -0.02 1.25 16 30 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.80 7.64 -2.38 -0.02 1.78 16 33 H 0.41 13.50 6.82 -96.74 -0.66 12.84 16 34 H 0.29 15.34 8.31 -92.71 -0.77 14.56 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.87 293.70 -3.52 -72.40 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.49 Total: 25.79 kcal Atomic # 6 Polarization: -56.90 SS G_CDS: 3.39 Total: -53.51 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -3.90 Total: -108.39 kcal Atomic # 8 Polarization: -109.58 SS G_CDS: -4.11 Total: -113.69 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.82 Total: 43.50 kcal Atomic # 16 Polarization: 134.14 SS G_CDS: -0.23 Total: 133.91 kcal Total: -68.87 -3.52 -72.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721909394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.950 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds