Wall clock time and date at job start Mon Mar 30 2020 04:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00038 * 2 1 4 4 O 1.21287 * 119.99913 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99874 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47183 * 319.99488 * 5 3 2 7 7 C 1.52996 * 109.47208 * 79.99870 * 5 3 2 8 8 N 1.46505 * 109.46775 * 199.99668 * 5 3 2 9 9 C 1.46497 * 119.99651 * 114.45498 * 8 5 3 10 10 C 1.50705 * 109.47096 * 269.99601 * 9 8 5 11 11 H 1.08000 * 119.99766 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00012 * 180.02562 * 10 9 8 13 13 N 1.31522 * 120.00315 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 120.00008 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46853 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46858 * 119.99848 * 14 12 10 17 17 H 1.48503 * 109.47156 * 240.00055 * 14 12 10 18 18 C 1.39665 * 120.00032 * 294.44828 * 8 5 3 19 19 C 1.38918 * 120.07601 * 185.94786 * 18 8 5 20 20 C 1.38109 * 119.92380 * 179.72754 * 19 18 8 21 21 C 1.38280 * 120.07373 * 0.27754 * 20 19 18 22 22 C 1.38289 * 120.15279 * 359.97438 * 21 20 19 23 23 C 1.38094 * 120.07467 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47021 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47135 * 299.99946 * 1 2 3 26 26 H 1.08993 * 109.47086 * 60.00096 * 1 2 3 27 27 H 0.97004 * 119.99497 * 179.97438 * 2 1 3 28 28 H 1.09011 * 109.46850 * 194.29888 * 7 5 3 29 29 H 1.09004 * 109.47076 * 314.29489 * 7 5 3 30 30 H 1.08998 * 109.47527 * 74.29852 * 7 5 3 31 31 H 1.08995 * 109.47853 * 29.99665 * 9 8 5 32 32 H 1.09005 * 109.47308 * 150.00129 * 9 8 5 33 33 H 0.97001 * 119.99619 * 179.97438 * 13 12 10 34 34 H 1.07997 * 120.03436 * 359.97438 * 19 18 8 35 35 H 1.07993 * 119.95681 * 180.29686 * 20 19 18 36 36 H 1.08000 * 119.92177 * 180.02562 * 21 20 19 37 37 H 1.08004 * 119.95679 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.03810 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0094 0.3798 0.6597 7 6 4.1553 0.9169 -1.4214 8 7 4.1344 2.4650 0.4719 9 6 4.8742 2.5542 1.7332 10 6 3.9087 2.7887 2.8663 11 1 2.8500 2.8641 2.6668 12 6 4.3770 2.9078 4.1576 13 7 5.6664 2.8164 4.4005 14 14 3.1803 3.1992 5.5621 15 1 1.7963 3.2633 5.0278 16 1 3.2833 2.0856 6.5391 17 1 3.5103 4.4809 6.2357 18 6 3.8949 3.6172 -0.2803 19 6 4.4611 4.8273 0.1004 20 6 4.2268 5.9636 -0.6489 21 6 3.4249 5.8988 -1.7735 22 6 2.8554 4.6969 -2.1524 23 6 3.0864 3.5567 -1.4084 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9500 -0.8401 0.0004 28 1 5.2154 0.6651 -1.3881 29 1 3.5996 0.0916 -1.8665 30 1 4.0141 1.8157 -2.0216 31 1 5.4153 1.6236 1.9037 32 1 5.5818 3.3817 1.6817 33 1 5.9958 2.9006 5.3090 34 1 5.0871 4.8786 0.9790 35 1 4.6706 6.9036 -0.3561 36 1 3.2436 6.7888 -2.3579 37 1 2.2299 4.6499 -3.0316 38 1 2.6417 2.6183 -1.7050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020358725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:57 Heat of formation + Delta-G solvation = 13.264300 kcal Electronic energy + Delta-G solvation = -20421.285385 eV Core-core repulsion = 17457.498507 eV Total energy + Delta-G solvation = -2963.786877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02111 -38.16759 -35.61207 -34.25184 -32.96812 -31.35206 -29.84440 -28.88174 -26.78390 -26.28517 -23.49141 -22.74278 -21.50087 -20.50426 -19.45359 -17.63708 -16.41818 -15.98603 -15.85381 -14.96514 -14.86317 -14.71460 -14.14046 -13.83597 -13.62414 -13.11232 -12.85585 -12.57804 -12.32604 -12.20886 -12.09492 -11.94523 -11.66281 -11.34265 -11.19197 -10.99669 -10.65085 -10.47634 -10.22743 -9.90904 -9.73945 -9.24326 -8.83653 -8.80170 -8.47305 -8.03392 -6.41934 -5.98261 -4.12784 2.27838 2.43714 3.07898 3.27242 3.35570 3.43035 3.46273 4.08722 4.44050 4.73332 5.04264 5.24400 5.31308 5.39398 5.41872 5.61428 5.64449 5.70798 5.73064 5.89332 5.94864 6.01848 6.24197 6.34285 6.44273 6.52751 6.64154 6.74569 7.02888 7.17048 7.30191 7.34197 7.45291 7.70029 7.74059 7.87575 8.19732 8.28167 8.51279 8.64916 8.98922 9.54121 10.98558 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.008936 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.590314 B = 3132.686845 C = 4231.596525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.743 5.743 3 C 0.495 3.505 4 O -0.508 6.508 5 C 0.143 3.857 6 H 0.106 0.894 7 C -0.177 4.177 8 N -0.598 5.598 9 C 0.251 3.749 10 C -0.526 4.526 11 H 0.061 0.939 12 C 0.061 3.939 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.282 1.282 18 C 0.245 3.755 19 C -0.186 4.186 20 C -0.086 4.086 21 C -0.198 4.198 22 C -0.093 4.093 23 C -0.179 4.179 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.398 0.602 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -5.687 -11.406 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.397 5.397 3 C 0.280 3.720 4 O -0.381 6.381 5 C 0.033 3.967 6 H 0.123 0.877 7 C -0.235 4.235 8 N -0.306 5.306 9 C 0.132 3.868 10 C -0.565 4.565 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.208 1.208 18 C 0.141 3.859 19 C -0.208 4.208 20 C -0.105 4.105 21 C -0.218 4.218 22 C -0.112 4.112 23 C -0.201 4.201 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.231 0.769 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.538 -5.048 -11.113 13.022 hybrid contribution -0.627 -0.330 1.146 1.347 sum -5.165 -5.378 -9.967 12.447 Atomic orbital electron populations 1.21431 0.80441 1.01451 1.02048 1.45922 1.07282 1.08856 1.77664 1.21672 0.91209 0.83565 0.75601 1.90768 1.70117 1.30701 1.46509 1.20645 0.89547 0.89369 0.97128 0.87659 1.22467 1.02029 1.03247 0.95749 1.46838 1.58370 1.01786 1.23568 1.19346 0.91236 0.97957 0.78292 1.21685 0.94429 1.48966 0.91458 0.92037 1.24937 0.95164 0.95209 0.98732 1.69939 1.12362 1.50523 1.20804 0.86508 0.81569 0.77823 0.82021 1.19759 1.21039 1.20847 1.17708 0.91524 0.86933 0.89733 1.20845 1.05542 0.91691 1.02737 1.20742 0.97772 0.97211 0.94734 1.20629 1.04070 0.97256 0.99878 1.20675 0.98909 0.92832 0.98762 1.20806 1.02641 0.99005 0.97666 0.91240 0.92503 0.92707 0.76946 0.91209 0.92025 0.89723 0.95261 0.94180 0.92811 0.85440 0.87295 0.87884 0.87774 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 10.70 59.85 0.64 1.71 16 2 N -0.74 -9.87 5.71 -67.08 -0.38 -10.26 16 3 C 0.49 8.83 6.16 -10.99 -0.07 8.76 16 4 O -0.51 -11.23 13.12 5.55 0.07 -11.16 16 5 C 0.14 2.48 3.08 -69.08 -0.21 2.27 16 6 H 0.11 1.72 7.76 -51.93 -0.40 1.31 16 7 C -0.18 -2.41 8.89 37.16 0.33 -2.08 16 8 N -0.60 -12.89 2.40 -166.86 -0.40 -13.29 16 9 C 0.25 6.27 5.03 -5.19 -0.03 6.24 16 10 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 11 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 14 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 15 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 C 0.24 5.29 5.64 -83.79 -0.47 4.82 16 19 C -0.19 -4.03 9.26 -39.38 -0.36 -4.39 16 20 C -0.09 -1.62 10.04 -39.61 -0.40 -2.02 16 21 C -0.20 -3.50 10.04 -39.55 -0.40 -3.90 16 22 C -0.09 -1.67 10.04 -39.62 -0.40 -2.07 16 23 C -0.18 -3.51 5.82 -39.38 -0.23 -3.74 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.40 3.92 8.83 -40.82 -0.36 3.56 16 28 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 30 H 0.08 1.28 4.59 -51.93 -0.24 1.04 16 31 H 0.03 0.74 7.88 -51.93 -0.41 0.33 16 32 H 0.04 1.06 5.99 -51.93 -0.31 0.75 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.13 2.94 6.03 -52.49 -0.32 2.62 16 35 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.12 2.21 3.97 -52.48 -0.21 2.00 16 LS Contribution 310.91 15.07 4.69 4.69 Total: -1.00 -32.84 310.91 -7.50 -40.33 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.17 Total: 5.55 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.02 Total: -7.82 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.05 Total: -48.58 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.84 -7.50 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020358725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.598 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds