Wall clock time and date at job start Mon Mar 30 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00038 * 2 1 4 4 O 1.21287 * 119.99913 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99874 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47183 * 319.99488 * 5 3 2 7 7 C 1.52996 * 109.47208 * 79.99870 * 5 3 2 8 8 N 1.46505 * 109.46775 * 199.99668 * 5 3 2 9 9 C 1.46497 * 119.99651 * 114.45498 * 8 5 3 10 10 C 1.50705 * 109.47096 * 269.99601 * 9 8 5 11 11 H 1.08000 * 119.99766 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00012 * 180.02562 * 10 9 8 13 13 N 1.31522 * 120.00315 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 120.00008 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46853 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46858 * 119.99848 * 14 12 10 17 17 H 1.48503 * 109.47156 * 240.00055 * 14 12 10 18 18 C 1.39665 * 120.00032 * 294.44828 * 8 5 3 19 19 C 1.38918 * 120.07601 * 185.94786 * 18 8 5 20 20 C 1.38109 * 119.92380 * 179.72754 * 19 18 8 21 21 C 1.38280 * 120.07373 * 0.27754 * 20 19 18 22 22 C 1.38289 * 120.15279 * 359.97438 * 21 20 19 23 23 C 1.38094 * 120.07467 * 359.97438 * 22 21 20 24 24 H 1.09003 * 109.47021 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47135 * 299.99946 * 1 2 3 26 26 H 1.08993 * 109.47086 * 60.00096 * 1 2 3 27 27 H 0.97004 * 119.99497 * 179.97438 * 2 1 3 28 28 H 1.09011 * 109.46850 * 194.29888 * 7 5 3 29 29 H 1.09004 * 109.47076 * 314.29489 * 7 5 3 30 30 H 1.08998 * 109.47527 * 74.29852 * 7 5 3 31 31 H 1.08995 * 109.47853 * 29.99665 * 9 8 5 32 32 H 1.09005 * 109.47308 * 150.00129 * 9 8 5 33 33 H 0.97001 * 119.99619 * 179.97438 * 13 12 10 34 34 H 1.07997 * 120.03436 * 359.97438 * 19 18 8 35 35 H 1.07993 * 119.95681 * 180.29686 * 20 19 18 36 36 H 1.08000 * 119.92177 * 180.02562 * 21 20 19 37 37 H 1.08004 * 119.95679 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.03810 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0094 0.3798 0.6597 7 6 4.1553 0.9169 -1.4214 8 7 4.1344 2.4650 0.4719 9 6 4.8742 2.5542 1.7332 10 6 3.9087 2.7887 2.8663 11 1 2.8500 2.8641 2.6668 12 6 4.3770 2.9078 4.1576 13 7 5.6664 2.8164 4.4005 14 14 3.1803 3.1992 5.5621 15 1 1.7963 3.2633 5.0278 16 1 3.2833 2.0856 6.5391 17 1 3.5103 4.4809 6.2357 18 6 3.8949 3.6172 -0.2803 19 6 4.4611 4.8273 0.1004 20 6 4.2268 5.9636 -0.6489 21 6 3.4249 5.8988 -1.7735 22 6 2.8554 4.6969 -2.1524 23 6 3.0864 3.5567 -1.4084 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9500 -0.8401 0.0004 28 1 5.2154 0.6651 -1.3881 29 1 3.5996 0.0916 -1.8665 30 1 4.0141 1.8157 -2.0216 31 1 5.4153 1.6236 1.9037 32 1 5.5818 3.3817 1.6817 33 1 5.9958 2.9006 5.3090 34 1 5.0871 4.8786 0.9790 35 1 4.6706 6.9036 -0.3561 36 1 3.2436 6.7888 -2.3579 37 1 2.2299 4.6499 -3.0316 38 1 2.6417 2.6183 -1.7050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020358725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:56 Heat of formation + Delta-G solvation = -8.496794 kcal Electronic energy + Delta-G solvation = -20422.229017 eV Core-core repulsion = 17457.498507 eV Total energy + Delta-G solvation = -2964.730509 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.44882 -39.61596 -37.15883 -35.53203 -34.97095 -32.89797 -31.30011 -30.57335 -28.12342 -27.84864 -25.10134 -24.33019 -23.00927 -21.97977 -20.88487 -19.06839 -18.53395 -17.40884 -17.29814 -16.74688 -16.18788 -16.05334 -15.90316 -15.19796 -15.07584 -14.59890 -14.51382 -14.08391 -13.72681 -13.64792 -13.40835 -13.10551 -13.08948 -13.06228 -12.84064 -12.68284 -12.51714 -12.28109 -11.97217 -11.66674 -11.38939 -10.81162 -10.64114 -10.41469 -10.04261 -9.53644 -8.37125 -7.79320 -6.36295 0.76327 0.94510 1.29809 1.32968 1.45160 1.70327 2.22384 2.34071 2.64231 3.04491 3.23279 3.87265 4.09228 4.14307 4.21043 4.31368 4.46857 4.51075 4.62336 4.67037 4.80094 4.82758 4.88785 4.94196 4.98138 5.13113 5.19464 5.27481 5.36102 5.51643 5.61073 5.72656 5.80469 5.91274 6.08940 6.24880 6.45980 6.63083 6.85496 6.93488 7.34402 7.37451 8.81634 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.008936 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.590314 B = 3132.686845 C = 4231.596525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.725 5.725 3 C 0.491 3.509 4 O -0.558 6.558 5 C 0.134 3.866 6 H 0.111 0.889 7 C -0.164 4.164 8 N -0.608 5.608 9 C 0.268 3.732 10 C -0.536 4.536 11 H 0.035 0.965 12 C 0.019 3.981 13 N -0.920 5.920 14 Si 0.952 3.048 15 H -0.283 1.283 16 H -0.268 1.268 17 H -0.276 1.276 18 C 0.222 3.778 19 C -0.220 4.220 20 C -0.090 4.090 21 C -0.192 4.192 22 C -0.095 4.095 23 C -0.179 4.179 24 H 0.115 0.885 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.417 0.583 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.267 0.733 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 -6.518 -12.754 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.379 5.379 3 C 0.276 3.724 4 O -0.435 6.435 5 C 0.025 3.975 6 H 0.129 0.871 7 C -0.222 4.222 8 N -0.317 5.317 9 C 0.147 3.853 10 C -0.575 4.575 11 H 0.053 0.947 12 C -0.181 4.181 13 N -0.560 5.560 14 Si 0.778 3.222 15 H -0.209 1.209 16 H -0.193 1.193 17 H -0.201 1.201 18 C 0.119 3.881 19 C -0.243 4.243 20 C -0.109 4.109 21 C -0.212 4.212 22 C -0.114 4.114 23 C -0.201 4.201 24 H 0.133 0.867 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.253 0.747 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.747 -5.941 -12.483 14.971 hybrid contribution -0.290 -0.081 1.511 1.540 sum -6.037 -6.022 -10.972 13.896 Atomic orbital electron populations 1.21592 0.79121 1.04036 1.00797 1.45784 1.08173 1.08420 1.75554 1.21740 0.91398 0.84047 0.75191 1.90738 1.70899 1.32647 1.49236 1.20971 0.89634 0.87539 0.99343 0.87102 1.22387 1.02945 1.03883 0.93020 1.46701 1.58821 1.03575 1.22572 1.18859 0.90570 0.96336 0.79522 1.21742 0.93439 1.49351 0.92929 0.94712 1.25622 0.96702 0.94910 1.00830 1.70011 1.13545 1.50881 1.21582 0.85606 0.78835 0.78366 0.79428 1.20873 1.19327 1.20147 1.17964 0.92545 0.86838 0.90773 1.20853 1.06955 0.93443 1.03044 1.21023 0.97897 0.97074 0.94889 1.21034 1.02465 0.98525 0.99144 1.21129 0.98604 0.92272 0.99354 1.20960 1.01941 1.00203 0.97031 0.86689 0.94917 0.92842 0.74686 0.90411 0.88448 0.91012 0.96090 0.96530 0.92344 0.88402 0.85243 0.84336 0.84479 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.91 10.70 127.77 1.37 3.28 16 2 N -0.73 -17.93 5.71 -484.53 -2.77 -20.70 16 3 C 0.49 17.30 6.16 87.66 0.54 17.84 16 4 O -0.56 -24.93 13.12 -3.05 -0.04 -24.97 16 5 C 0.13 4.62 3.08 44.24 0.14 4.76 16 6 H 0.11 3.60 7.76 -2.39 -0.02 3.58 16 7 C -0.16 -4.23 8.89 71.98 0.64 -3.59 16 8 N -0.61 -27.16 2.40 -681.83 -1.64 -28.80 16 9 C 0.27 14.09 5.03 85.64 0.43 14.52 16 10 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 11 H 0.03 2.18 7.81 -2.91 -0.02 2.15 16 12 C 0.02 1.08 5.46 84.65 0.46 1.54 16 13 N -0.92 -53.88 13.29 21.45 0.28 -53.60 16 14 Si 0.95 45.87 29.54 68.60 2.03 47.90 16 15 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 C 0.22 9.85 5.64 38.22 0.22 10.07 16 19 C -0.22 -9.97 9.26 22.40 0.21 -9.77 16 20 C -0.09 -3.39 10.04 22.25 0.22 -3.17 16 21 C -0.19 -6.35 10.04 22.29 0.22 -6.13 16 22 C -0.09 -3.22 10.04 22.25 0.22 -3.00 16 23 C -0.18 -6.95 5.82 22.40 0.13 -6.82 16 24 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.42 7.04 8.83 -92.70 -0.82 6.22 16 28 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.10 1.78 8.06 -2.38 -0.02 1.76 16 30 H 0.07 2.07 4.59 -2.39 -0.01 2.06 16 31 H 0.02 1.12 7.88 -2.39 -0.02 1.10 16 32 H 0.02 0.95 5.99 -2.38 -0.01 0.93 16 33 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.10 4.90 6.03 -2.91 -0.02 4.88 16 35 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 36 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 38 H 0.13 4.61 3.97 -2.91 -0.01 4.59 16 Total: -1.00 -73.86 310.91 3.16 -70.71 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.25 Total: 20.85 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 5.04 Total: -11.39 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -4.12 Total: -103.09 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.04 Total: -24.97 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.86 3.16 -70.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020358725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.209 kcal (2) G-P(sol) polarization free energy of solvation -73.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds