Wall clock time and date at job start Mon Mar 30 2020 04:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46810 * 2 1 4 4 C 1.52996 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47674 * 54.99583 * 4 3 2 6 6 N 1.46903 * 109.47352 * 295.00101 * 4 3 2 7 7 C 1.50703 * 109.47357 * 175.00082 * 4 3 2 8 8 O 1.21274 * 120.00214 * 99.99791 * 7 4 3 9 9 N 1.34778 * 119.99788 * 279.99936 * 7 4 3 10 10 C 1.39240 * 119.99991 * 175.70230 * 9 7 4 11 11 C 1.39473 * 119.83284 * 215.01344 * 10 9 7 12 12 C 1.36383 * 120.16523 * 179.76092 * 11 10 9 13 13 C 1.40864 * 119.82611 * 0.51693 * 12 11 10 14 14 C 1.41158 * 120.16412 * 179.71477 * 13 12 11 15 15 H 1.08000 * 120.00618 * 214.80328 * 14 13 12 16 16 C 1.39911 * 119.99577 * 34.80603 * 14 13 12 17 17 N 1.30873 * 120.00097 * 355.55613 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 175.56274 * 16 14 13 19 19 H 1.48494 * 109.47410 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46990 * 120.00062 * 18 16 14 21 21 H 1.48505 * 109.46736 * 239.99843 * 18 16 14 22 22 C 1.40865 * 119.67513 * 359.74247 * 13 12 11 23 23 C 1.36373 * 119.82744 * 359.97438 * 22 13 12 24 24 H 1.09006 * 109.47181 * 59.99949 * 1 2 3 25 25 H 1.09001 * 109.47293 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47156 * 300.00554 * 1 2 3 27 27 H 1.08997 * 109.47091 * 240.00231 * 2 1 3 28 28 H 1.08990 * 109.46868 * 119.99808 * 2 1 3 29 29 H 1.08997 * 109.47105 * 60.00240 * 3 2 1 30 30 H 1.09002 * 109.46886 * 299.99684 * 3 2 1 31 31 H 1.00899 * 111.00429 * 176.05054 * 6 4 3 32 32 H 1.00902 * 110.99870 * 300.00228 * 6 4 3 33 33 H 0.97004 * 119.99729 * 355.70801 * 9 7 4 34 34 H 1.08000 * 119.92030 * 0.02794 * 11 10 9 35 35 H 1.08004 * 120.08665 * 180.25419 * 12 11 10 36 36 H 0.96995 * 119.99978 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.09012 * 179.97438 * 22 13 12 38 38 H 1.08000 * 119.91716 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9331 0.8532 -0.8427 6 7 4.0602 0.8570 1.2543 7 6 4.0723 2.8580 -0.1245 8 8 4.4468 3.4570 0.8613 9 7 4.1054 3.4582 -1.3308 10 6 4.4844 4.7941 -1.4336 11 6 3.8836 5.6142 -2.3884 12 6 4.2462 6.9249 -2.4917 13 6 5.2379 7.4469 -1.6383 14 6 5.6229 8.8009 -1.7431 15 1 6.6496 9.0857 -1.5665 16 6 4.6743 9.7741 -2.0758 17 7 3.4504 9.4198 -2.3748 18 14 5.1548 11.5791 -2.0934 19 1 6.5859 11.7141 -1.7206 20 1 4.9427 12.1346 -3.4541 21 1 4.3176 12.3237 -1.1187 22 6 5.8439 6.6109 -0.6801 23 6 5.4668 5.3038 -0.5848 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.0667 0.7865 1.2515 32 1 3.7370 1.3858 2.0505 33 1 3.8651 2.9595 -2.1273 34 1 3.1263 5.2115 -3.0447 35 1 3.7772 7.5599 -3.2288 36 1 2.7930 10.0944 -2.6058 37 1 6.6053 7.0040 -0.0227 38 1 5.9308 4.6615 0.1491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037030989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:08 Heat of formation + Delta-G solvation = -34.487195 kcal Electronic energy + Delta-G solvation = -19082.570920 eV Core-core repulsion = 16116.713382 eV Total energy + Delta-G solvation = -2965.857538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96271 -37.56083 -35.95017 -34.50891 -32.93868 -32.75709 -29.64156 -29.11250 -27.96505 -25.41374 -23.69976 -21.62847 -21.11510 -20.60562 -19.56631 -17.41827 -16.98284 -16.69071 -15.96976 -15.28419 -15.10671 -14.38520 -14.28006 -13.88931 -13.63558 -13.37106 -12.95166 -12.71764 -12.33170 -12.16782 -11.80447 -11.73748 -11.40919 -11.22982 -11.19751 -11.10487 -10.91783 -10.75530 -10.72001 -10.10522 -9.67101 -9.49687 -9.38005 -8.95868 -8.60884 -7.57787 -6.89363 -6.64129 -4.36761 2.49575 2.96901 3.05824 3.08635 3.13953 3.28083 3.72006 3.96548 4.46693 4.66567 4.77294 4.91401 4.99256 5.16182 5.23443 5.50342 5.61966 5.63641 5.77054 5.80418 5.98527 6.15959 6.17266 6.30300 6.40419 6.72416 6.84943 6.95504 7.04810 7.18268 7.26968 7.32777 7.60910 7.71461 7.83189 8.03771 8.23037 8.28655 8.59302 8.69825 8.90471 8.97230 10.26987 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036571 B = 0.003877 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.439773 B = 7221.260470 C = 7651.578347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.106 4.106 4 C 0.076 3.924 5 H 0.098 0.902 6 N -0.819 5.819 7 C 0.464 3.536 8 O -0.538 6.538 9 N -0.647 5.647 10 C 0.000 4.000 11 C -0.121 4.121 12 C -0.141 4.141 13 C 0.100 3.900 14 C -0.461 4.461 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.812 5.812 18 Si 0.916 3.084 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.206 4.206 23 C -0.085 4.085 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.343 0.657 32 H 0.349 0.651 33 H 0.395 0.605 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.277 0.723 37 H 0.096 0.904 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 -13.438 0.436 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.144 4.144 4 C -0.039 4.039 5 H 0.116 0.884 6 N -0.348 5.348 7 C 0.249 3.751 8 O -0.415 6.415 9 N -0.290 5.290 10 C -0.092 4.092 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.097 3.903 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.146 4.146 17 N -0.439 5.439 18 Si 0.741 3.259 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.226 4.226 23 C -0.105 4.105 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.229 0.771 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.804 -13.572 0.883 14.122 hybrid contribution 0.403 1.643 -0.268 1.713 sum -3.401 -11.928 0.615 12.419 Atomic orbital electron populations 1.21805 0.96255 1.01362 1.01770 1.21420 0.95031 0.95925 1.02764 1.21548 0.91829 0.98097 1.02926 1.21567 0.96910 0.90229 0.95240 0.88428 1.59191 1.16538 1.55577 1.03482 1.22009 0.79376 0.90173 0.83554 1.90677 1.47895 1.65769 1.37186 1.43134 1.65961 1.11452 1.08451 1.17319 1.03114 0.83189 1.05605 1.20325 0.99663 0.94660 0.99448 1.21200 1.01307 0.92564 1.01038 1.17729 0.91004 0.92777 0.88742 1.19543 0.96452 0.91558 1.41606 0.90553 1.25889 0.94543 1.01642 0.92504 1.69768 1.03270 1.35625 1.35231 0.86140 0.79809 0.81545 0.78445 1.18583 1.19969 1.19971 1.20808 1.05936 0.94221 1.01653 1.20366 0.95807 0.95885 0.98467 0.92913 0.92886 0.92831 0.92276 0.90654 0.91386 0.91176 0.84478 0.83686 0.77107 0.89086 0.85013 0.91183 0.88628 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.11 -1.05 5.82 -26.73 -0.16 -1.20 16 3 C -0.11 -1.16 4.84 -26.73 -0.13 -1.29 16 4 C 0.08 0.91 3.15 -68.86 -0.22 0.69 16 5 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 6 N -0.82 -9.31 8.44 -5.65 -0.05 -9.35 16 7 C 0.46 7.77 6.90 -10.98 -0.08 7.69 16 8 O -0.54 -11.21 13.67 5.56 0.08 -11.14 16 9 N -0.65 -11.14 5.30 -9.74 -0.05 -11.19 16 10 C 0.00 0.00 6.31 -83.57 -0.53 -0.52 16 11 C -0.12 -2.75 9.90 -39.79 -0.39 -3.15 16 12 C -0.14 -3.63 8.62 -39.26 -0.34 -3.97 16 13 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 14 C -0.46 -12.35 9.03 -37.85 -0.34 -12.69 16 15 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 16 C 0.07 1.75 5.42 -17.33 -0.09 1.66 16 17 N -0.81 -21.15 10.60 55.55 0.59 -20.56 16 18 Si 0.92 19.04 29.56 -169.99 -5.03 14.02 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 C -0.21 -5.27 9.74 -39.26 -0.38 -5.65 16 23 C -0.09 -2.06 8.61 -39.79 -0.34 -2.40 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.73 7.75 -51.93 -0.40 0.33 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.34 3.76 9.06 -39.29 -0.36 3.40 16 32 H 0.35 4.28 8.58 -39.29 -0.34 3.94 16 33 H 0.40 5.33 8.82 -40.82 -0.36 4.97 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.13 3.50 6.13 -52.48 -0.32 3.18 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 37 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.11 2.50 6.22 -52.49 -0.33 2.17 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -29.66 318.50 -8.34 -38.00 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -5.46 Total: 15.11 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -3.22 Total: -19.68 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.49 Total: -41.11 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.66 -8.34 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037030989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.513 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds