Wall clock time and date at job start Mon Mar 30 2020 04:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46810 * 2 1 4 4 C 1.52996 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47674 * 54.99583 * 4 3 2 6 6 N 1.46903 * 109.47352 * 295.00101 * 4 3 2 7 7 C 1.50703 * 109.47357 * 175.00082 * 4 3 2 8 8 O 1.21274 * 120.00214 * 99.99791 * 7 4 3 9 9 N 1.34778 * 119.99788 * 279.99936 * 7 4 3 10 10 C 1.39240 * 119.99991 * 175.70230 * 9 7 4 11 11 C 1.39473 * 119.83284 * 215.01344 * 10 9 7 12 12 C 1.36383 * 120.16523 * 179.76092 * 11 10 9 13 13 C 1.40864 * 119.82611 * 0.51693 * 12 11 10 14 14 C 1.41158 * 120.16412 * 179.71477 * 13 12 11 15 15 H 1.08000 * 120.00618 * 214.80328 * 14 13 12 16 16 C 1.39911 * 119.99577 * 34.80603 * 14 13 12 17 17 N 1.30873 * 120.00097 * 355.55613 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 175.56274 * 16 14 13 19 19 H 1.48494 * 109.47410 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46990 * 120.00062 * 18 16 14 21 21 H 1.48505 * 109.46736 * 239.99843 * 18 16 14 22 22 C 1.40865 * 119.67513 * 359.74247 * 13 12 11 23 23 C 1.36373 * 119.82744 * 359.97438 * 22 13 12 24 24 H 1.09006 * 109.47181 * 59.99949 * 1 2 3 25 25 H 1.09001 * 109.47293 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47156 * 300.00554 * 1 2 3 27 27 H 1.08997 * 109.47091 * 240.00231 * 2 1 3 28 28 H 1.08990 * 109.46868 * 119.99808 * 2 1 3 29 29 H 1.08997 * 109.47105 * 60.00240 * 3 2 1 30 30 H 1.09002 * 109.46886 * 299.99684 * 3 2 1 31 31 H 1.00899 * 111.00429 * 176.05054 * 6 4 3 32 32 H 1.00902 * 110.99870 * 300.00228 * 6 4 3 33 33 H 0.97004 * 119.99729 * 355.70801 * 9 7 4 34 34 H 1.08000 * 119.92030 * 0.02794 * 11 10 9 35 35 H 1.08004 * 120.08665 * 180.25419 * 12 11 10 36 36 H 0.96995 * 119.99978 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.09012 * 179.97438 * 22 13 12 38 38 H 1.08000 * 119.91716 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9331 0.8532 -0.8427 6 7 4.0602 0.8570 1.2543 7 6 4.0723 2.8580 -0.1245 8 8 4.4468 3.4570 0.8613 9 7 4.1054 3.4582 -1.3308 10 6 4.4844 4.7941 -1.4336 11 6 3.8836 5.6142 -2.3884 12 6 4.2462 6.9249 -2.4917 13 6 5.2379 7.4469 -1.6383 14 6 5.6229 8.8009 -1.7431 15 1 6.6496 9.0857 -1.5665 16 6 4.6743 9.7741 -2.0758 17 7 3.4504 9.4198 -2.3748 18 14 5.1548 11.5791 -2.0934 19 1 6.5859 11.7141 -1.7206 20 1 4.9427 12.1346 -3.4541 21 1 4.3176 12.3237 -1.1187 22 6 5.8439 6.6109 -0.6801 23 6 5.4668 5.3038 -0.5848 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.0667 0.7865 1.2515 32 1 3.7370 1.3858 2.0505 33 1 3.8651 2.9595 -2.1273 34 1 3.1263 5.2115 -3.0447 35 1 3.7772 7.5599 -3.2288 36 1 2.7930 10.0944 -2.6058 37 1 6.6053 7.0040 -0.0227 38 1 5.9308 4.6615 0.1491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037030989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:08 Heat of formation + Delta-G solvation = -53.996170 kcal Electronic energy + Delta-G solvation = -19083.416892 eV Core-core repulsion = 16116.713382 eV Total energy + Delta-G solvation = -2966.703510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41587 -39.29050 -37.03728 -36.19182 -34.71279 -33.63313 -31.52983 -30.89957 -28.98773 -27.04494 -25.00116 -23.31485 -22.53049 -21.87706 -20.99853 -19.31127 -18.45506 -18.03983 -17.19196 -16.98519 -16.24034 -15.88460 -15.55476 -15.46708 -14.81608 -14.59526 -14.52635 -14.09726 -13.99939 -13.62504 -13.27773 -13.15924 -12.89407 -12.80117 -12.64714 -12.49139 -12.03220 -11.90784 -11.73984 -11.48080 -11.41698 -11.23928 -11.03210 -10.69504 -9.79242 -9.49407 -8.76015 -8.52940 -6.35951 0.75354 1.09951 1.38307 1.41525 1.53277 1.72147 2.22306 2.34834 2.78002 3.47217 3.63756 3.80321 3.98864 4.08770 4.32214 4.36626 4.44901 4.49403 4.74022 4.83203 4.90243 4.98503 5.06983 5.10843 5.12341 5.29476 5.31760 5.40567 5.43853 5.58315 5.66174 5.86143 5.95784 6.01196 6.11198 6.35627 6.36856 6.64151 6.70078 6.94098 6.96941 7.33931 8.39972 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036571 B = 0.003877 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.439773 B = 7221.260470 C = 7651.578347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.104 4.104 4 C 0.091 3.909 5 H 0.129 0.871 6 N -0.811 5.811 7 C 0.463 3.537 8 O -0.580 6.580 9 N -0.641 5.641 10 C 0.017 3.983 11 C -0.119 4.119 12 C -0.159 4.159 13 C 0.068 3.932 14 C -0.498 4.498 15 H 0.072 0.928 16 C 0.028 3.972 17 N -0.841 5.841 18 Si 0.989 3.011 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.269 1.269 22 C -0.223 4.223 23 C -0.098 4.098 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.347 0.653 32 H 0.345 0.655 33 H 0.418 0.582 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.285 0.715 37 H 0.094 0.906 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -14.939 -0.195 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.142 4.142 4 C -0.025 4.025 5 H 0.146 0.854 6 N -0.339 5.339 7 C 0.250 3.750 8 O -0.460 6.460 9 N -0.285 5.285 10 C -0.076 4.076 11 C -0.139 4.139 12 C -0.179 4.179 13 C 0.065 3.935 14 C -0.529 4.529 15 H 0.090 0.910 16 C -0.184 4.184 17 N -0.469 5.469 18 Si 0.810 3.190 19 H -0.185 1.185 20 H -0.186 1.186 21 H -0.194 1.194 22 C -0.243 4.243 23 C -0.118 4.118 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.255 0.745 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.643 -15.135 0.234 15.832 hybrid contribution 0.628 1.922 -0.022 2.022 sum -4.015 -13.213 0.212 13.811 Atomic orbital electron populations 1.21807 0.95788 1.02071 1.01567 1.21362 0.95383 0.94435 1.03216 1.21571 0.90876 0.99386 1.02393 1.21684 0.97460 0.86882 0.96494 0.85365 1.59238 1.16880 1.54629 1.03115 1.23082 0.77795 0.91700 0.82412 1.90665 1.49513 1.67217 1.38594 1.43104 1.65788 1.09627 1.10024 1.17394 1.01205 0.85366 1.03682 1.20586 0.99864 0.93654 0.99816 1.21188 1.01733 0.93843 1.01108 1.18035 0.92244 0.93442 0.89760 1.19755 0.96841 0.92424 1.43886 0.91015 1.26743 0.94216 1.05926 0.91535 1.69825 1.04138 1.37317 1.35597 0.85048 0.79350 0.75631 0.78960 1.18466 1.18620 1.19419 1.20933 1.06367 0.95081 1.01883 1.20486 0.96666 0.95461 0.99155 0.92708 0.91753 0.93496 0.90829 0.91135 0.93094 0.90662 0.84050 0.84221 0.74501 0.85665 0.86297 0.90442 0.88753 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.53 16 2 C -0.11 -1.63 5.82 30.60 0.18 -1.45 16 3 C -0.10 -2.01 4.84 30.59 0.15 -1.86 16 4 C 0.09 1.90 3.15 44.17 0.14 2.04 16 5 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 6 N -0.81 -16.62 8.44 -171.79 -1.45 -18.07 16 7 C 0.46 14.61 6.90 87.66 0.60 15.21 16 8 O -0.58 -23.79 13.67 -3.01 -0.04 -23.84 16 9 N -0.64 -20.55 5.30 -303.12 -1.61 -22.15 16 10 C 0.02 0.75 6.31 38.56 0.24 1.00 16 11 C -0.12 -5.33 9.90 22.13 0.22 -5.11 16 12 C -0.16 -8.32 8.62 22.48 0.19 -8.12 16 13 C 0.07 3.76 5.55 -21.28 -0.12 3.65 16 14 C -0.50 -27.68 9.03 23.39 0.21 -27.46 16 15 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 16 C 0.03 1.43 5.42 85.24 0.46 1.89 16 17 N -0.84 -44.55 10.60 21.82 0.23 -44.32 16 18 Si 0.99 39.38 29.56 68.60 2.03 41.40 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 21 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 22 C -0.22 -11.76 9.74 22.48 0.22 -11.54 16 23 C -0.10 -4.75 8.61 22.13 0.19 -4.56 16 24 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.17 7.75 -2.39 -0.02 1.15 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.35 6.85 9.06 -89.69 -0.81 6.04 16 32 H 0.34 7.96 8.58 -89.69 -0.77 7.19 16 33 H 0.42 9.77 8.82 -92.71 -0.82 8.95 16 34 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 35 H 0.12 6.48 6.13 -2.91 -0.02 6.47 16 36 H 0.28 13.65 8.30 -92.71 -0.77 12.88 16 37 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.11 5.09 6.22 -2.91 -0.02 5.07 16 Total: -1.00 -65.71 318.50 1.26 -64.46 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: -1.31 Total: 40.39 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 3.40 Total: -37.86 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.83 Total: -84.55 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.04 Total: -23.84 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.40 kcal Total: -65.71 1.26 -64.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037030989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.460 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds