Wall clock time and date at job start Mon Mar 30 2020 04:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47146 * 2 1 4 4 N 1.46898 * 109.47278 * 119.99859 * 2 1 3 5 5 C 1.46905 * 111.00284 * 155.00072 * 4 2 1 6 6 C 1.50693 * 109.47426 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99937 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00055 * 179.97438 * 6 5 4 9 9 C 1.39234 * 119.99787 * 184.28933 * 8 6 5 10 10 C 1.39480 * 119.83810 * 324.71162 * 9 8 6 11 11 C 1.36373 * 120.17151 * 180.29688 * 10 9 8 12 12 C 1.40869 * 119.82638 * 359.48095 * 11 10 9 13 13 C 1.41149 * 120.16615 * 180.24677 * 12 11 10 14 14 H 1.08002 * 120.00564 * 215.01718 * 13 12 11 15 15 C 1.39907 * 119.99949 * 35.01923 * 13 12 11 16 16 N 1.30873 * 119.99679 * 355.54737 * 15 13 12 17 17 Si 1.86795 * 120.00282 * 175.54331 * 15 13 12 18 18 H 1.48497 * 109.47333 * 59.99949 * 17 15 13 19 19 H 1.48503 * 109.47069 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47361 * 299.99743 * 17 15 13 21 21 C 1.40878 * 119.67448 * 0.51928 * 12 11 10 22 22 C 1.36371 * 119.82161 * 359.73123 * 21 12 11 23 23 H 1.09003 * 109.46941 * 299.99839 * 1 2 3 24 24 H 1.09001 * 109.47710 * 59.99945 * 1 2 3 25 25 H 1.09000 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47311 * 239.99781 * 2 1 3 27 27 H 1.08995 * 109.47369 * 60.00224 * 3 2 1 28 28 H 1.09004 * 109.47139 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46893 * 299.99801 * 3 2 1 30 30 H 1.00898 * 111.00134 * 31.04379 * 4 2 1 31 31 H 1.09005 * 109.47020 * 59.99927 * 5 4 2 32 32 H 1.09001 * 109.46760 * 300.00754 * 5 4 2 33 33 H 0.96994 * 119.99721 * 4.29555 * 8 6 5 34 34 H 1.07997 * 119.91386 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.08733 * 179.70254 * 11 10 9 36 36 H 0.97006 * 120.00240 * 180.02562 * 16 15 13 37 37 H 1.07991 * 120.08734 * 179.71251 * 21 12 11 38 38 H 1.08005 * 119.91371 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.3670 -1.2354 0.9807 6 6 3.8346 -1.9374 2.2295 7 8 3.1163 -1.9807 3.2058 8 7 5.0509 -2.5171 2.2614 9 6 5.4475 -3.2418 3.3822 10 6 5.0478 -2.8285 4.6530 11 6 5.4373 -3.5298 5.7558 12 6 6.2362 -4.6806 5.6083 13 6 6.6391 -5.4148 6.7445 14 1 7.6107 -5.8860 6.7665 15 6 5.7798 -5.5323 7.8423 16 7 4.6394 -4.8902 7.8522 17 14 6.2601 -6.6054 9.2938 18 1 7.5277 -6.1035 9.8825 19 1 5.1863 -6.5616 10.3186 20 1 6.4479 -8.0049 8.8340 21 6 6.6360 -5.0919 4.3215 22 6 6.2428 -4.3773 3.2285 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.3793 -1.4181 1.4848 31 1 4.0523 -0.4219 0.7425 32 1 3.3431 -1.9443 0.1530 33 1 5.6500 -2.4293 1.5037 34 1 4.4320 -1.9483 4.7642 35 1 5.1311 -3.2058 6.7395 36 1 4.0437 -4.9713 8.6135 37 1 7.2523 -5.9704 4.2011 38 1 6.5488 -4.6911 2.2414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037388953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:30 Heat of formation + Delta-G solvation = -18.350186 kcal Electronic energy + Delta-G solvation = -18882.786749 eV Core-core repulsion = 15917.628965 eV Total energy + Delta-G solvation = -2965.157784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.66493 -37.59459 -36.69628 -34.36904 -32.87971 -31.72627 -29.48672 -28.99890 -27.47785 -26.27174 -24.33653 -21.43344 -20.91591 -20.67528 -19.49299 -17.26180 -17.05372 -16.36833 -15.93156 -15.23373 -15.13994 -14.44889 -14.32077 -13.89204 -13.38948 -13.11129 -12.64551 -12.62557 -12.33695 -12.26458 -12.09593 -11.80030 -11.68250 -11.43082 -11.37054 -11.11528 -11.01404 -10.91878 -10.46973 -9.89767 -9.85551 -9.40019 -8.96333 -8.72210 -8.47758 -7.49367 -6.85464 -6.56233 -4.30326 2.61881 3.04280 3.11838 3.12970 3.14909 3.37364 3.55981 4.01116 4.24698 4.73800 4.75198 4.85950 5.11576 5.14576 5.26136 5.36436 5.47111 5.65073 5.66312 5.69958 5.70288 5.97421 6.14009 6.15374 6.41836 6.82588 6.85644 7.05041 7.07788 7.23806 7.29930 7.34115 7.66862 7.71913 8.01835 8.12228 8.24217 8.37366 8.70290 8.82369 8.96319 9.05049 10.34739 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039819 B = 0.003621 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.005092 B = 7730.902074 C = 8198.206057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.078 3.922 3 C -0.141 4.141 4 N -0.669 5.669 5 C 0.044 3.956 6 C 0.495 3.505 7 O -0.513 6.513 8 N -0.656 5.656 9 C 0.006 3.994 10 C -0.093 4.093 11 C -0.144 4.144 12 C 0.100 3.900 13 C -0.464 4.464 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.808 5.808 17 Si 0.915 3.085 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.205 4.205 22 C -0.115 4.115 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.352 0.648 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.394 0.606 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.279 0.721 37 H 0.096 0.904 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 7.209 -13.689 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.031 4.031 3 C -0.199 4.199 4 N -0.304 5.304 5 C -0.089 4.089 6 C 0.281 3.719 7 O -0.388 6.388 8 N -0.300 5.300 9 C -0.086 4.086 10 C -0.113 4.113 11 C -0.164 4.164 12 C 0.097 3.903 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.146 4.146 16 N -0.435 5.435 17 Si 0.740 3.260 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.192 1.192 21 C -0.225 4.225 22 C -0.135 4.135 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.173 0.827 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.942 7.790 -12.542 15.282 hybrid contribution 0.253 -1.323 -0.405 1.406 sum -3.689 6.467 -12.947 14.935 Atomic orbital electron populations 1.21964 0.94527 1.02087 1.02628 1.21535 0.94988 0.95621 0.90991 1.21813 1.01019 0.95346 1.01696 1.60173 1.02630 1.34023 1.33542 1.21824 0.93167 0.98744 0.95177 1.20471 0.81714 0.79991 0.89713 1.90721 1.54664 1.57784 1.35613 1.42976 1.15953 1.52317 1.18767 1.17288 1.08568 0.97039 0.85743 1.20665 0.99538 1.00013 0.91124 1.21308 1.01985 0.95128 0.97960 1.17720 0.90440 0.90337 0.91756 1.19441 1.02330 1.28981 0.98764 0.90713 1.25891 0.94397 0.95333 0.99013 1.69785 1.08452 1.35101 1.30114 0.86258 0.78927 0.80705 0.80064 1.19081 1.20432 1.19176 1.20685 1.08170 1.01120 0.92502 1.20071 1.01513 0.94568 0.97327 0.91488 0.91945 0.92678 0.94025 0.91790 0.92872 0.92730 0.82728 0.88539 0.92731 0.77329 0.87378 0.85224 0.91027 0.88582 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.18 37.15 0.34 -0.96 16 2 C 0.08 0.75 3.22 -67.71 -0.22 0.54 16 3 C -0.14 -1.27 9.42 37.16 0.35 -0.92 16 4 N -0.67 -8.50 5.93 -107.99 -0.64 -9.14 16 5 C 0.04 0.54 5.97 -4.98 -0.03 0.51 16 6 C 0.50 8.72 7.70 -10.99 -0.08 8.63 16 7 O -0.51 -11.48 13.62 5.55 0.08 -11.40 16 8 N -0.66 -11.46 5.30 -9.74 -0.05 -11.51 16 9 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 10 C -0.09 -2.37 8.61 -39.79 -0.34 -2.71 16 11 C -0.14 -3.92 8.61 -39.26 -0.34 -4.26 16 12 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 13 C -0.46 -12.54 9.02 -37.85 -0.34 -12.88 16 14 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 15 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 16 N -0.81 -21.85 10.61 55.55 0.59 -21.26 16 17 Si 0.92 19.34 29.56 -169.99 -5.03 14.32 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 21 C -0.20 -5.00 9.74 -39.26 -0.38 -5.38 16 22 C -0.11 -2.52 9.90 -39.79 -0.39 -2.91 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.04 0.37 7.80 -51.93 -0.40 -0.04 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.48 7.45 -51.93 -0.39 0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.35 4.75 8.04 -39.29 -0.32 4.43 16 31 H 0.10 1.02 7.44 -51.93 -0.39 0.64 16 32 H 0.05 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.39 5.22 8.82 -40.82 -0.36 4.86 16 34 H 0.11 2.78 6.22 -52.49 -0.33 2.46 16 35 H 0.13 3.70 6.15 -52.48 -0.32 3.38 16 36 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -30.95 317.93 -8.34 -39.29 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.43 Total: 11.84 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.65 Total: -16.93 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.10 Total: -41.91 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.95 -8.34 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037388953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.944 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds