Wall clock time and date at job start Mon Mar 30 2020 04:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47146 * 2 1 4 4 N 1.46898 * 109.47278 * 119.99859 * 2 1 3 5 5 C 1.46905 * 111.00284 * 155.00072 * 4 2 1 6 6 C 1.50693 * 109.47426 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99937 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00055 * 179.97438 * 6 5 4 9 9 C 1.39234 * 119.99787 * 184.28933 * 8 6 5 10 10 C 1.39480 * 119.83810 * 324.71162 * 9 8 6 11 11 C 1.36373 * 120.17151 * 180.29688 * 10 9 8 12 12 C 1.40869 * 119.82638 * 359.48095 * 11 10 9 13 13 C 1.41149 * 120.16615 * 180.24677 * 12 11 10 14 14 H 1.08002 * 120.00564 * 215.01718 * 13 12 11 15 15 C 1.39907 * 119.99949 * 35.01923 * 13 12 11 16 16 N 1.30873 * 119.99679 * 355.54737 * 15 13 12 17 17 Si 1.86795 * 120.00282 * 175.54331 * 15 13 12 18 18 H 1.48497 * 109.47333 * 59.99949 * 17 15 13 19 19 H 1.48503 * 109.47069 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47361 * 299.99743 * 17 15 13 21 21 C 1.40878 * 119.67448 * 0.51928 * 12 11 10 22 22 C 1.36371 * 119.82161 * 359.73123 * 21 12 11 23 23 H 1.09003 * 109.46941 * 299.99839 * 1 2 3 24 24 H 1.09001 * 109.47710 * 59.99945 * 1 2 3 25 25 H 1.09000 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47311 * 239.99781 * 2 1 3 27 27 H 1.08995 * 109.47369 * 60.00224 * 3 2 1 28 28 H 1.09004 * 109.47139 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46893 * 299.99801 * 3 2 1 30 30 H 1.00898 * 111.00134 * 31.04379 * 4 2 1 31 31 H 1.09005 * 109.47020 * 59.99927 * 5 4 2 32 32 H 1.09001 * 109.46760 * 300.00754 * 5 4 2 33 33 H 0.96994 * 119.99721 * 4.29555 * 8 6 5 34 34 H 1.07997 * 119.91386 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.08733 * 179.70254 * 11 10 9 36 36 H 0.97006 * 120.00240 * 180.02562 * 16 15 13 37 37 H 1.07991 * 120.08734 * 179.71251 * 21 12 11 38 38 H 1.08005 * 119.91371 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.3670 -1.2354 0.9807 6 6 3.8346 -1.9374 2.2295 7 8 3.1163 -1.9807 3.2058 8 7 5.0509 -2.5171 2.2614 9 6 5.4475 -3.2418 3.3822 10 6 5.0478 -2.8285 4.6530 11 6 5.4373 -3.5298 5.7558 12 6 6.2362 -4.6806 5.6083 13 6 6.6391 -5.4148 6.7445 14 1 7.6107 -5.8860 6.7665 15 6 5.7798 -5.5323 7.8423 16 7 4.6394 -4.8902 7.8522 17 14 6.2601 -6.6054 9.2938 18 1 7.5277 -6.1035 9.8825 19 1 5.1863 -6.5616 10.3186 20 1 6.4479 -8.0049 8.8340 21 6 6.6360 -5.0919 4.3215 22 6 6.2428 -4.3773 3.2285 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.3793 -1.4181 1.4848 31 1 4.0523 -0.4219 0.7425 32 1 3.3431 -1.9443 0.1530 33 1 5.6500 -2.4293 1.5037 34 1 4.4320 -1.9483 4.7642 35 1 5.1311 -3.2058 6.7395 36 1 4.0437 -4.9713 8.6135 37 1 7.2523 -5.9704 4.2011 38 1 6.5488 -4.6911 2.2414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037388953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:30 Heat of formation + Delta-G solvation = -39.413205 kcal Electronic energy + Delta-G solvation = -18883.700110 eV Core-core repulsion = 15917.628965 eV Total energy + Delta-G solvation = -2966.071145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18801 -39.18519 -37.82222 -36.11721 -34.67568 -32.70699 -31.41123 -30.80100 -28.22268 -27.62055 -25.94281 -23.24689 -22.69184 -21.46491 -21.05989 -19.22180 -18.52664 -17.77951 -17.03021 -16.99433 -16.19996 -15.89570 -15.67707 -15.18609 -14.87504 -14.69823 -14.32077 -13.92323 -13.71564 -13.40513 -13.34037 -13.30522 -12.91573 -12.81575 -12.68199 -12.58298 -12.30255 -12.09230 -11.76747 -11.73496 -11.69815 -11.17592 -10.71132 -10.43546 -9.45479 -9.38231 -8.73003 -8.48789 -6.32259 0.82844 1.13628 1.38688 1.46871 1.51816 1.83756 2.23147 2.27738 2.82405 3.27136 3.68775 3.87380 4.02236 4.19015 4.36431 4.42858 4.44974 4.47030 4.50947 4.83863 4.94299 4.99161 5.01356 5.01579 5.13403 5.18692 5.30273 5.35098 5.44053 5.44656 5.71921 5.86696 6.06182 6.09864 6.15938 6.34269 6.36938 6.71758 6.78135 6.96662 7.03407 7.46759 8.43995 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039819 B = 0.003621 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.005092 B = 7730.902074 C = 8198.206057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.078 3.922 3 C -0.140 4.140 4 N -0.692 5.692 5 C 0.058 3.942 6 C 0.492 3.508 7 O -0.567 6.567 8 N -0.646 5.646 9 C 0.021 3.979 10 C -0.110 4.110 11 C -0.169 4.169 12 C 0.065 3.935 13 C -0.498 4.498 14 H 0.080 0.920 15 C 0.022 3.978 16 N -0.848 5.848 17 Si 0.991 3.009 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.210 4.210 22 C -0.108 4.108 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.344 0.656 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.419 0.581 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.282 0.718 37 H 0.113 0.887 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 6.911 -16.423 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 C -0.198 4.198 4 N -0.326 5.326 5 C -0.074 4.074 6 C 0.280 3.720 7 O -0.444 6.444 8 N -0.292 5.292 9 C -0.072 4.072 10 C -0.130 4.130 11 C -0.189 4.189 12 C 0.063 3.937 13 C -0.529 4.529 14 H 0.098 0.902 15 C -0.190 4.190 16 N -0.476 5.476 17 Si 0.812 3.188 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.183 1.183 21 C -0.230 4.230 22 C -0.128 4.128 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.163 0.837 31 H 0.139 0.861 32 H 0.106 0.894 33 H 0.257 0.743 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.249 7.521 -15.347 17.397 hybrid contribution 0.000 -1.115 0.271 1.148 sum -3.248 6.405 -15.076 16.700 Atomic orbital electron populations 1.21954 0.93931 1.02196 1.02909 1.21643 0.95550 0.95592 0.90299 1.21820 1.01032 0.95027 1.01890 1.60208 1.02717 1.34083 1.35641 1.21810 0.93371 0.99657 0.92594 1.21521 0.80877 0.78840 0.90754 1.90714 1.56099 1.59530 1.38102 1.42897 1.16747 1.51531 1.18046 1.17366 1.06716 0.96989 0.86159 1.20666 1.00074 0.99806 0.92444 1.21165 1.03774 0.96433 0.97515 1.18057 0.91537 0.90657 0.93476 1.19746 1.03060 1.30151 0.99950 0.90195 1.26862 0.93976 0.96385 1.01745 1.69916 1.09718 1.36759 1.31176 0.85117 0.78813 0.78725 0.76155 1.18147 1.19839 1.18330 1.20972 1.07978 1.01898 0.92159 1.20450 1.00071 0.93415 0.98815 0.92834 0.90016 0.92686 0.92246 0.93486 0.92816 0.90686 0.83657 0.86060 0.89443 0.74301 0.88721 0.87952 0.90789 0.86905 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.18 71.98 0.66 -1.62 16 2 C 0.08 1.29 3.22 44.92 0.14 1.44 16 3 C -0.14 -2.18 9.42 71.98 0.68 -1.51 16 4 N -0.69 -16.39 5.93 -495.57 -2.94 -19.33 16 5 C 0.06 1.24 5.97 85.55 0.51 1.75 16 6 C 0.49 16.53 7.70 87.65 0.67 17.20 16 7 O -0.57 -25.67 13.62 -3.04 -0.04 -25.71 16 8 N -0.65 -20.94 5.30 -303.11 -1.61 -22.55 16 9 C 0.02 0.93 6.31 38.57 0.24 1.18 16 10 C -0.11 -5.75 8.61 22.13 0.19 -5.56 16 11 C -0.17 -9.69 8.61 22.48 0.19 -9.50 16 12 C 0.07 3.64 5.55 -21.27 -0.12 3.52 16 13 C -0.50 -27.72 9.02 23.39 0.21 -27.51 16 14 H 0.08 4.18 7.85 -2.91 -0.02 4.15 16 15 C 0.02 1.15 5.42 85.24 0.46 1.61 16 16 N -0.85 -48.10 10.61 21.82 0.23 -47.87 16 17 Si 0.99 40.33 29.56 68.60 2.03 42.36 16 18 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 C -0.21 -10.12 9.74 22.48 0.22 -9.90 16 22 C -0.11 -4.47 9.90 22.13 0.22 -4.26 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 26 H 0.06 0.81 7.80 -2.38 -0.02 0.79 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.82 7.45 -2.38 -0.02 0.81 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.34 9.02 8.04 -89.70 -0.72 8.30 16 31 H 0.12 2.07 7.44 -2.38 -0.02 2.05 16 32 H 0.09 1.38 8.06 -2.39 -0.02 1.36 16 33 H 0.42 9.36 8.82 -92.71 -0.82 8.55 16 34 H 0.09 5.14 6.22 -2.91 -0.02 5.12 16 35 H 0.10 6.32 6.15 -2.91 -0.02 6.31 16 36 H 0.28 14.71 8.30 -92.70 -0.77 13.94 16 37 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 38 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -71.49 317.93 1.50 -70.00 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.46 Total: 36.24 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 4.29 Total: -33.15 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -4.32 Total: -89.74 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.04 Total: -25.71 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -71.49 1.50 -70.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037388953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.586 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds