Wall clock time and date at job start Mon Mar 30 2020 04:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46760 * 2 1 4 4 N 1.46895 * 109.46812 * 240.00097 * 2 1 3 5 5 C 1.52998 * 109.47125 * 120.00039 * 2 1 3 6 6 C 1.50709 * 109.46667 * 185.00053 * 5 2 1 7 7 O 1.21284 * 120.00269 * 5.93760 * 6 5 2 8 8 N 1.34781 * 119.99399 * 185.94512 * 6 5 2 9 9 C 1.46504 * 119.99446 * 184.35477 * 8 6 5 10 10 C 1.50696 * 109.46760 * 269.99240 * 9 8 6 11 11 H 1.07999 * 120.00136 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99987 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99841 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00019 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47203 * 60.00150 * 14 12 10 16 16 H 1.48498 * 109.47271 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47295 * 300.00327 * 14 12 10 18 18 C 1.39922 * 120.00409 * 4.34435 * 8 6 5 19 19 C 1.38874 * 120.06713 * 67.56922 * 18 8 6 20 20 C 1.38109 * 119.93077 * 180.32086 * 19 18 8 21 21 C 1.38287 * 120.06873 * 359.93058 * 20 19 18 22 22 C 1.38280 * 120.13983 * 0.04556 * 21 20 19 23 23 C 1.38112 * 120.07073 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46689 * 299.99925 * 1 2 3 26 26 H 1.08993 * 109.47521 * 59.99606 * 1 2 3 27 27 H 1.00907 * 111.00121 * 60.00028 * 4 2 1 28 28 H 1.00899 * 111.00145 * 183.95227 * 4 2 1 29 29 H 1.08997 * 109.47122 * 65.00161 * 5 2 1 30 30 H 1.08996 * 109.47364 * 304.99932 * 5 2 1 31 31 H 1.08996 * 109.47060 * 29.99641 * 9 8 6 32 32 H 1.08994 * 109.47116 * 149.99771 * 9 8 6 33 33 H 0.96994 * 119.99560 * 179.97438 * 13 12 10 34 34 H 1.08003 * 120.03588 * 0.25108 * 19 18 8 35 35 H 1.08003 * 119.96471 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.92663 * 180.02562 * 21 20 19 37 37 H 1.08004 * 119.96264 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.03279 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0401 -0.7212 1.2492 6 6 3.5420 -0.6148 1.3126 7 8 4.1362 0.0686 0.5058 8 7 4.2250 -1.2793 2.2659 9 6 5.6740 -1.1011 2.3874 10 6 6.3790 -2.1189 1.5283 11 1 5.8051 -2.8272 0.9492 12 6 7.7568 -2.1450 1.4805 13 7 8.4556 -1.2822 2.1853 14 14 8.6306 -3.4061 0.4149 15 1 8.2260 -3.2224 -1.0020 16 1 10.0994 -3.2257 0.5382 17 1 8.2610 -4.7732 0.8619 18 6 3.5500 -2.1390 3.1395 19 6 2.9809 -3.3116 2.6602 20 6 2.3097 -4.1549 3.5237 21 6 2.2051 -3.8333 4.8646 22 6 2.7711 -2.6667 5.3450 23 6 3.4424 -1.8185 4.4863 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6961 -0.2349 -2.0386 28 1 3.0261 -0.7626 -1.1910 29 1 1.7517 -1.7715 1.2055 30 1 1.6055 -0.2618 2.1369 31 1 5.9455 -0.0979 2.0592 32 1 5.9706 -1.2359 3.4276 33 1 9.4248 -1.3009 2.1519 34 1 3.0623 -3.5634 1.6131 35 1 1.8665 -5.0668 3.1515 36 1 1.6800 -4.4946 5.5379 37 1 2.6873 -2.4181 6.3927 38 1 3.8838 -0.9072 4.8621 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037607343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:24 Heat of formation + Delta-G solvation = -15.278682 kcal Electronic energy + Delta-G solvation = -19974.847206 eV Core-core repulsion = 17009.822612 eV Total energy + Delta-G solvation = -2965.024594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98861 -38.27663 -35.84448 -34.66318 -32.69743 -30.71288 -29.61442 -29.33210 -28.21931 -26.52295 -23.10869 -22.50091 -22.07214 -20.35429 -18.91143 -17.00960 -16.55197 -16.08781 -15.89486 -15.41943 -15.01840 -14.75894 -14.39248 -14.18870 -13.60982 -13.29932 -13.12075 -12.60037 -12.38553 -12.25273 -11.86802 -11.66076 -11.52391 -11.36359 -11.24145 -11.06665 -10.91691 -10.83203 -10.61207 -10.17685 -9.74748 -9.27653 -8.67377 -8.55240 -8.44181 -8.42046 -7.67101 -6.06352 -4.10587 1.58118 1.66118 3.27261 3.32523 3.35875 3.40198 3.78722 4.05126 4.44028 4.76606 4.92435 5.03592 5.18615 5.21007 5.28585 5.36623 5.50008 5.55746 5.69937 5.70994 5.81375 5.83627 6.01076 6.05794 6.12740 6.27589 6.33573 6.61909 6.74469 6.81917 6.97672 7.20103 7.33369 7.41182 7.48853 7.77405 7.89178 8.18184 8.34039 8.83835 8.98308 9.53838 11.02080 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.007949 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.300654 B = 3521.454831 C = 4790.171301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.101 3.899 3 H 0.042 0.958 4 N -0.849 5.849 5 C -0.139 4.139 6 C 0.515 3.485 7 O -0.535 6.535 8 N -0.562 5.562 9 C 0.248 3.752 10 C -0.524 4.524 11 H 0.058 0.942 12 C 0.062 3.938 13 N -0.896 5.896 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.165 3.835 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.135 4.135 22 C -0.110 4.110 23 C -0.127 4.127 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.334 0.666 28 H 0.357 0.643 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 -1.555 3.011 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.011 4.011 3 H 0.060 0.940 4 N -0.382 5.382 5 C -0.179 4.179 6 C 0.304 3.696 7 O -0.412 6.412 8 N -0.289 5.289 9 C 0.130 3.870 10 C -0.563 4.563 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.535 5.535 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.073 3.927 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.153 4.153 22 C -0.129 4.129 23 C -0.146 4.146 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.173 0.827 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.330 -1.713 2.886 15.693 hybrid contribution 1.236 0.092 -0.646 1.398 sum -14.094 -1.621 2.240 14.363 Atomic orbital electron populations 1.21819 0.94695 1.02311 1.01288 1.21002 0.94323 0.95708 0.90039 0.94026 1.58922 1.18585 1.57198 1.03468 1.21876 0.93245 1.03747 0.99067 1.20497 0.89264 0.79484 0.80359 1.90628 1.70977 1.41012 1.38543 1.45990 1.10431 1.41834 1.30668 1.19409 0.71399 0.98593 0.97551 1.21326 0.91342 1.16333 1.27278 0.92384 1.24912 0.97254 0.96078 0.95744 1.69917 1.06733 1.35937 1.40878 0.86543 0.78296 0.81523 0.81011 1.20104 1.21151 1.20198 1.17722 0.94230 0.90749 0.89997 1.21386 0.98925 0.93219 1.00619 1.20979 0.99278 0.99142 0.93481 1.21054 1.01267 0.97452 0.95546 1.20953 0.98120 0.94638 0.99185 1.21309 0.99910 1.00410 0.93014 0.91918 0.92446 0.92829 0.85516 0.82735 0.88412 0.89205 0.93637 0.94814 0.92632 0.85785 0.86125 0.86419 0.86149 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.49 37.16 0.35 -1.25 16 2 C 0.10 1.47 3.04 -67.71 -0.21 1.26 16 3 H 0.04 0.66 7.87 -51.93 -0.41 0.25 16 4 N -0.85 -12.89 9.24 -4.67 -0.04 -12.93 16 5 C -0.14 -2.18 4.29 -27.88 -0.12 -2.30 16 6 C 0.52 10.68 7.17 -10.98 -0.08 10.60 16 7 O -0.53 -12.88 14.02 5.55 0.08 -12.80 16 8 N -0.56 -12.16 2.51 -114.74 -0.29 -12.44 16 9 C 0.25 6.54 5.08 -5.19 -0.03 6.52 16 10 C -0.52 -15.00 9.39 -34.44 -0.32 -15.33 16 11 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 14 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.17 3.03 4.47 -83.70 -0.37 2.66 16 19 C -0.12 -2.01 8.21 -39.39 -0.32 -2.33 16 20 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 21 C -0.13 -1.68 10.04 -39.55 -0.40 -2.07 16 22 C -0.11 -1.46 10.04 -39.61 -0.40 -1.86 16 23 C -0.13 -2.05 9.69 -39.40 -0.38 -2.43 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.33 4.28 9.04 -39.29 -0.36 3.93 16 28 H 0.36 6.45 6.94 -39.29 -0.27 6.18 16 29 H 0.10 1.49 6.41 -51.93 -0.33 1.16 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.33 7.49 -51.93 -0.39 0.94 16 32 H 0.03 0.91 7.86 -51.93 -0.41 0.50 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.12 2.10 7.94 -52.48 -0.42 1.68 16 35 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -31.75 320.78 -7.98 -39.74 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.51 Total: 9.19 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.77 Total: -6.72 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.41 Total: -51.37 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.75 -7.98 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037607343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.460 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds