Wall clock time and date at job start Mon Mar 30 2020 04:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46760 * 2 1 4 4 N 1.46895 * 109.46812 * 240.00097 * 2 1 3 5 5 C 1.52998 * 109.47125 * 120.00039 * 2 1 3 6 6 C 1.50709 * 109.46667 * 185.00053 * 5 2 1 7 7 O 1.21284 * 120.00269 * 5.93760 * 6 5 2 8 8 N 1.34781 * 119.99399 * 185.94512 * 6 5 2 9 9 C 1.46504 * 119.99446 * 184.35477 * 8 6 5 10 10 C 1.50696 * 109.46760 * 269.99240 * 9 8 6 11 11 H 1.07999 * 120.00136 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99987 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99841 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00019 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47203 * 60.00150 * 14 12 10 16 16 H 1.48498 * 109.47271 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47295 * 300.00327 * 14 12 10 18 18 C 1.39922 * 120.00409 * 4.34435 * 8 6 5 19 19 C 1.38874 * 120.06713 * 67.56922 * 18 8 6 20 20 C 1.38109 * 119.93077 * 180.32086 * 19 18 8 21 21 C 1.38287 * 120.06873 * 359.93058 * 20 19 18 22 22 C 1.38280 * 120.13983 * 0.04556 * 21 20 19 23 23 C 1.38112 * 120.07073 * 0.02562 * 22 21 20 24 24 H 1.08995 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46689 * 299.99925 * 1 2 3 26 26 H 1.08993 * 109.47521 * 59.99606 * 1 2 3 27 27 H 1.00907 * 111.00121 * 60.00028 * 4 2 1 28 28 H 1.00899 * 111.00145 * 183.95227 * 4 2 1 29 29 H 1.08997 * 109.47122 * 65.00161 * 5 2 1 30 30 H 1.08996 * 109.47364 * 304.99932 * 5 2 1 31 31 H 1.08996 * 109.47060 * 29.99641 * 9 8 6 32 32 H 1.08994 * 109.47116 * 149.99771 * 9 8 6 33 33 H 0.96994 * 119.99560 * 179.97438 * 13 12 10 34 34 H 1.08003 * 120.03588 * 0.25108 * 19 18 8 35 35 H 1.08003 * 119.96471 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.92663 * 180.02562 * 21 20 19 37 37 H 1.08004 * 119.96264 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.03279 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0401 -0.7212 1.2492 6 6 3.5420 -0.6148 1.3126 7 8 4.1362 0.0686 0.5058 8 7 4.2250 -1.2793 2.2659 9 6 5.6740 -1.1011 2.3874 10 6 6.3790 -2.1189 1.5283 11 1 5.8051 -2.8272 0.9492 12 6 7.7568 -2.1450 1.4805 13 7 8.4556 -1.2822 2.1853 14 14 8.6306 -3.4061 0.4149 15 1 8.2260 -3.2224 -1.0020 16 1 10.0994 -3.2257 0.5382 17 1 8.2610 -4.7732 0.8619 18 6 3.5500 -2.1390 3.1395 19 6 2.9809 -3.3116 2.6602 20 6 2.3097 -4.1549 3.5237 21 6 2.2051 -3.8333 4.8646 22 6 2.7711 -2.6667 5.3450 23 6 3.4424 -1.8185 4.4863 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6961 -0.2349 -2.0386 28 1 3.0261 -0.7626 -1.1910 29 1 1.7517 -1.7715 1.2055 30 1 1.6055 -0.2618 2.1369 31 1 5.9455 -0.0979 2.0592 32 1 5.9706 -1.2359 3.4276 33 1 9.4248 -1.3009 2.1519 34 1 3.0623 -3.5634 1.6131 35 1 1.8665 -5.0668 3.1515 36 1 1.6800 -4.4946 5.5379 37 1 2.6873 -2.4181 6.3927 38 1 3.8838 -0.9072 4.8621 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037607343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:23 Heat of formation + Delta-G solvation = -36.284398 kcal Electronic energy + Delta-G solvation = -19975.758082 eV Core-core repulsion = 17009.822612 eV Total energy + Delta-G solvation = -2965.935470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48754 -39.60224 -37.17490 -36.24603 -34.80702 -31.88462 -31.13941 -30.61373 -29.50765 -28.23001 -25.02393 -23.81158 -23.31467 -21.60996 -20.33467 -18.74904 -18.41518 -17.49645 -17.24068 -16.96497 -16.31670 -16.17789 -16.07793 -15.52063 -15.05231 -14.68369 -14.38183 -14.26386 -13.78178 -13.59825 -13.40895 -13.13017 -12.88599 -12.74237 -12.69733 -12.52536 -12.44621 -12.20165 -12.11407 -12.08644 -11.75373 -10.88274 -10.68593 -10.09442 -9.81016 -9.64926 -9.21765 -8.26761 -6.41446 0.38347 0.52072 1.33033 1.37249 1.44607 1.68496 2.18629 2.37903 2.89008 3.02952 3.55807 3.62590 3.88625 4.08375 4.14446 4.33430 4.34606 4.39094 4.61940 4.62386 4.67610 4.74677 4.80601 4.98218 4.99707 5.06760 5.10317 5.17256 5.35119 5.42067 5.55687 5.64411 5.66730 5.77750 5.99062 6.08864 6.17566 6.54338 6.63597 6.72759 7.21360 7.35968 8.80351 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.007949 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.300654 B = 3521.454831 C = 4790.171301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.098 3.902 3 H 0.024 0.976 4 N -0.849 5.849 5 C -0.122 4.122 6 C 0.505 3.495 7 O -0.581 6.581 8 N -0.565 5.565 9 C 0.266 3.734 10 C -0.541 4.541 11 H 0.050 0.950 12 C 0.010 3.990 13 N -0.928 5.928 14 Si 0.967 3.033 15 H -0.275 1.275 16 H -0.275 1.275 17 H -0.263 1.263 18 C 0.126 3.874 19 C -0.135 4.135 20 C -0.103 4.103 21 C -0.119 4.119 22 C -0.103 4.103 23 C -0.142 4.142 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.345 0.655 28 H 0.337 0.663 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.003 0.997 32 H 0.019 0.981 33 H 0.268 0.732 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.795 -3.831 3.995 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.014 4.014 3 H 0.042 0.958 4 N -0.381 5.381 5 C -0.162 4.162 6 C 0.296 3.704 7 O -0.461 6.461 8 N -0.291 5.291 9 C 0.146 3.854 10 C -0.579 4.579 11 H 0.069 0.931 12 C -0.189 4.189 13 N -0.567 5.567 14 Si 0.791 3.209 15 H -0.201 1.201 16 H -0.200 1.200 17 H -0.188 1.188 18 C 0.036 3.964 19 C -0.154 4.154 20 C -0.122 4.122 21 C -0.137 4.137 22 C -0.121 4.121 23 C -0.162 4.162 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.021 0.979 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.171 0.829 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.689 -4.006 3.892 18.550 hybrid contribution 1.899 0.788 -0.859 2.228 sum -15.790 -3.218 3.032 16.398 Atomic orbital electron populations 1.21755 0.91397 1.03094 1.02857 1.21128 0.96723 0.94323 0.89191 0.95845 1.58978 1.17064 1.57560 1.04530 1.21852 0.88957 1.04671 1.00687 1.21471 0.91375 0.78261 0.79259 1.90591 1.72337 1.42877 1.40294 1.45833 1.08727 1.42779 1.31793 1.18802 0.74874 0.95780 0.95913 1.21565 0.92025 1.16667 1.27645 0.93135 1.25833 0.97997 0.98121 0.96963 1.70035 1.07153 1.37435 1.42087 0.85481 0.77376 0.79258 0.78820 1.20059 1.19991 1.18763 1.17990 0.96385 0.91602 0.90463 1.21373 1.00098 0.93308 1.00671 1.21346 0.97896 0.99277 0.93633 1.21554 0.99542 0.97047 0.95549 1.21335 0.96450 0.94101 1.00232 1.21392 1.01021 1.01142 0.92613 0.91431 0.90703 0.91528 0.84170 0.84916 0.87528 0.87046 0.97860 0.96333 0.92288 0.87185 0.82985 0.82219 0.82922 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.49 71.98 0.68 -1.99 16 2 C 0.10 2.83 3.04 44.92 0.14 2.96 16 3 H 0.02 0.76 7.87 -2.39 -0.02 0.74 16 4 N -0.85 -26.06 9.24 -168.68 -1.56 -27.62 16 5 C -0.12 -3.82 4.29 29.85 0.13 -3.70 16 6 C 0.51 22.06 7.17 87.66 0.63 22.69 16 7 O -0.58 -29.96 14.02 -3.04 -0.04 -30.00 16 8 N -0.56 -25.80 2.51 -635.31 -1.59 -27.39 16 9 C 0.27 15.01 5.08 85.63 0.43 15.45 16 10 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 11 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 12 C 0.01 0.59 5.46 84.66 0.46 1.05 16 13 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 14 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 18 C 0.13 4.70 4.47 38.15 0.17 4.87 16 19 C -0.13 -4.34 8.21 22.39 0.18 -4.15 16 20 C -0.10 -2.42 10.04 22.25 0.22 -2.20 16 21 C -0.12 -2.40 10.04 22.29 0.22 -2.18 16 22 C -0.10 -2.39 10.04 22.25 0.22 -2.17 16 23 C -0.14 -4.54 9.69 22.39 0.22 -4.32 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.35 8.84 9.04 -89.69 -0.81 8.03 16 28 H 0.34 12.80 6.94 -89.69 -0.62 12.17 16 29 H 0.11 3.18 6.41 -2.39 -0.02 3.17 16 30 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.00 0.21 7.49 -2.39 -0.02 0.19 16 32 H 0.02 1.08 7.86 -2.39 -0.02 1.06 16 33 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.11 3.76 7.94 -2.91 -0.02 3.74 16 35 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.11 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -73.37 320.78 2.70 -70.67 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.37 Total: 28.90 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 3.96 Total: -5.77 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -2.87 Total: -111.89 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.04 Total: -30.00 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.37 2.70 -70.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037607343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.384 kcal (2) G-P(sol) polarization free energy of solvation -73.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds