Wall clock time and date at job start Mon Mar 30 2020 04:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46782 * 2 1 4 4 N 1.46904 * 109.46977 * 119.99972 * 2 1 3 5 5 C 1.53002 * 109.47228 * 239.99605 * 2 1 3 6 6 C 1.50697 * 109.47336 * 174.99921 * 5 2 1 7 7 O 1.21293 * 119.99829 * 354.13928 * 6 5 2 8 8 N 1.34773 * 120.00046 * 174.13876 * 6 5 2 9 9 C 1.46508 * 119.99785 * 185.12992 * 8 6 5 10 10 C 1.50704 * 109.47091 * 89.99891 * 9 8 6 11 11 H 1.07998 * 119.99678 * 359.97438 * 10 9 8 12 12 C 1.37868 * 119.99606 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00783 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99666 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47186 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46979 * 120.00126 * 14 12 10 17 17 H 1.48500 * 109.47084 * 239.99849 * 14 12 10 18 18 C 1.39922 * 120.00365 * 5.12955 * 8 6 5 19 19 C 1.38876 * 120.06673 * 290.90294 * 18 8 6 20 20 C 1.38115 * 119.92279 * 179.76190 * 19 18 8 21 21 C 1.38278 * 120.07354 * 0.49147 * 20 19 18 22 22 C 1.38286 * 120.14169 * 359.76209 * 21 20 19 23 23 C 1.38106 * 120.06566 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47120 * 300.00157 * 1 2 3 25 25 H 1.09004 * 109.46956 * 60.00465 * 1 2 3 26 26 H 1.09009 * 109.47210 * 180.02562 * 1 2 3 27 27 H 1.00896 * 110.99969 * 60.00080 * 4 2 1 28 28 H 1.00894 * 110.99510 * 183.95420 * 4 2 1 29 29 H 1.09005 * 109.47463 * 295.00267 * 5 2 1 30 30 H 1.09001 * 109.46939 * 55.00110 * 5 2 1 31 31 H 1.09000 * 109.47005 * 210.00057 * 9 8 6 32 32 H 1.09001 * 109.47041 * 329.99938 * 9 8 6 33 33 H 0.97000 * 120.00705 * 180.02562 * 13 12 10 34 34 H 1.08003 * 120.03695 * 359.97313 * 19 18 8 35 35 H 1.08003 * 119.95728 * 180.25442 * 20 19 18 36 36 H 1.08000 * 119.92595 * 179.74552 * 21 20 19 37 37 H 1.07998 * 119.96440 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.03344 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0401 -0.7213 -1.2492 6 6 3.5419 -0.6150 -1.3127 7 8 4.1363 0.0674 -0.5051 8 7 4.2247 -1.2781 -2.2669 9 6 5.6897 -1.2662 -2.2615 10 6 6.1985 -2.4267 -1.4457 11 1 5.5004 -3.1049 -0.9777 12 6 7.5551 -2.6224 -1.2969 13 7 8.4052 -1.7962 -1.8663 14 14 8.1858 -4.0613 -0.2862 15 1 7.0352 -4.8359 0.2438 16 1 9.0207 -4.9402 -1.1438 17 1 9.0030 -3.5517 0.8442 18 6 3.5344 -1.9780 -3.2627 19 6 2.8233 -3.1265 -2.9403 20 6 2.1390 -3.8122 -3.9247 21 6 2.1698 -3.3621 -5.2318 22 6 2.8813 -2.2217 -5.5570 23 6 3.5640 -1.5291 -4.5765 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.6962 -1.6479 1.2228 28 1 3.0262 -0.6501 1.2559 29 1 1.7517 -1.7716 -1.2056 30 1 1.6055 -0.2619 -2.1369 31 1 6.0575 -1.3519 -3.2840 32 1 6.0438 -0.3323 -1.8251 33 1 9.3596 -1.9341 -1.7619 34 1 2.8027 -3.4810 -1.9204 35 1 1.5824 -4.7031 -3.6739 36 1 1.6372 -3.9024 -6.0004 37 1 2.9037 -1.8730 -6.5789 38 1 4.1199 -0.6388 -4.8311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037607344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:25 Heat of formation + Delta-G solvation = -16.389268 kcal Electronic energy + Delta-G solvation = -20002.600020 eV Core-core repulsion = 17037.527268 eV Total energy + Delta-G solvation = -2965.072753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.06895 -38.35421 -35.92787 -34.72954 -32.75011 -30.78759 -29.53650 -29.26633 -28.29076 -26.55501 -23.12951 -22.56414 -22.14870 -20.53353 -19.03039 -17.17719 -16.59100 -16.20753 -15.68860 -15.45980 -15.16996 -14.60805 -14.37793 -14.15212 -13.54980 -13.35175 -13.18471 -12.93582 -12.49880 -12.33340 -11.92765 -11.76491 -11.58646 -11.42075 -11.24568 -11.04818 -10.87314 -10.75579 -10.68108 -10.23322 -9.77433 -9.39479 -8.74402 -8.58961 -8.49208 -8.45044 -7.75202 -6.11697 -4.16961 1.51662 1.59018 3.19388 3.25655 3.33262 3.36729 3.72428 3.97841 4.38670 4.80120 4.87282 5.04725 5.12226 5.13748 5.23371 5.29619 5.47167 5.51614 5.61392 5.63164 5.75638 5.78249 5.88891 6.01398 6.19906 6.21813 6.31599 6.55036 6.67434 6.75803 6.92078 7.14220 7.30015 7.39824 7.47358 7.78929 7.83595 8.12028 8.27783 8.77211 8.92140 9.48099 10.96672 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.008078 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.540326 B = 3465.454500 C = 4739.741097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.102 3.898 3 H 0.086 0.914 4 N -0.845 5.845 5 C -0.180 4.180 6 C 0.513 3.487 7 O -0.530 6.530 8 N -0.562 5.562 9 C 0.246 3.754 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.899 3.101 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.165 3.835 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.125 4.125 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.330 0.670 28 H 0.358 0.642 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.186 -1.459 -4.902 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.010 4.010 3 H 0.104 0.896 4 N -0.376 5.376 5 C -0.222 4.222 6 C 0.301 3.699 7 O -0.407 6.407 8 N -0.290 5.290 9 C 0.128 3.872 10 C -0.566 4.566 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.207 1.207 18 C 0.073 3.927 19 C -0.143 4.143 20 C -0.129 4.129 21 C -0.152 4.152 22 C -0.128 4.128 23 C -0.145 4.145 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.141 0.859 28 H 0.174 0.826 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.015 -0.468 -4.044 15.557 hybrid contribution 1.120 -1.634 -0.374 2.016 sum -13.895 -2.102 -4.418 14.731 Atomic orbital electron populations 1.21806 0.94629 1.01722 1.01828 1.21192 0.94419 0.98878 0.86523 0.89562 1.58990 1.18728 1.20154 1.39716 1.22724 0.93895 1.03341 1.02239 1.20473 0.89230 0.79438 0.80734 1.90658 1.70872 1.39768 1.39366 1.45999 1.09359 1.48363 1.25272 1.19447 0.70888 0.98928 0.97918 1.21375 0.91791 1.11340 1.32093 0.92441 1.24915 0.96597 0.96688 0.95742 1.69934 1.02459 1.36852 1.43894 0.86426 0.78874 0.82073 0.79977 1.19792 1.20882 1.20746 1.17728 0.93983 0.92075 0.88961 1.21349 0.98741 0.94151 1.00046 1.20975 0.99499 0.99528 0.92936 1.21061 1.00614 0.97242 0.96317 1.20969 0.97419 0.95622 0.98790 1.21319 1.00125 1.00615 0.92448 0.91826 0.92455 0.92964 0.85893 0.82572 0.89384 0.89217 0.94842 0.93278 0.92642 0.86073 0.86135 0.86351 0.86065 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.49 37.16 0.35 -1.22 16 2 C 0.10 1.47 3.04 -67.71 -0.21 1.26 16 3 H 0.09 1.38 7.87 -51.93 -0.41 0.97 16 4 N -0.84 -12.93 9.20 -4.66 -0.04 -12.97 16 5 C -0.18 -2.69 4.08 -27.88 -0.11 -2.81 16 6 C 0.51 10.37 7.30 -10.99 -0.08 10.29 16 7 O -0.53 -12.57 13.91 5.55 0.08 -12.49 16 8 N -0.56 -11.94 2.50 -114.73 -0.29 -12.22 16 9 C 0.25 6.41 5.15 -5.19 -0.03 6.39 16 10 C -0.53 -14.82 9.39 -34.44 -0.32 -15.15 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 14 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.16 2.95 4.53 -83.70 -0.38 2.57 16 19 C -0.12 -1.94 8.27 -39.39 -0.33 -2.27 16 20 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 21 C -0.13 -1.62 10.04 -39.55 -0.40 -2.01 16 22 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 23 C -0.13 -2.00 9.72 -39.40 -0.38 -2.38 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.33 4.47 9.00 -39.29 -0.35 4.12 16 28 H 0.36 6.48 7.10 -39.29 -0.28 6.20 16 29 H 0.09 1.22 6.32 -51.93 -0.33 0.89 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.03 0.90 7.89 -51.93 -0.41 0.49 16 32 H 0.05 1.43 7.36 -51.93 -0.38 1.05 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.12 1.91 7.62 -52.48 -0.40 1.51 16 35 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -31.30 320.38 -7.97 -39.27 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.49 Total: 9.77 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.78 Total: -7.29 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.41 Total: -50.87 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.30 -7.97 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037607344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.882 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds