Wall clock time and date at job start Mon Mar 30 2020 04:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46782 * 2 1 4 4 N 1.46904 * 109.46977 * 119.99972 * 2 1 3 5 5 C 1.53002 * 109.47228 * 239.99605 * 2 1 3 6 6 C 1.50697 * 109.47336 * 174.99921 * 5 2 1 7 7 O 1.21293 * 119.99829 * 354.13928 * 6 5 2 8 8 N 1.34773 * 120.00046 * 174.13876 * 6 5 2 9 9 C 1.46508 * 119.99785 * 185.12992 * 8 6 5 10 10 C 1.50704 * 109.47091 * 89.99891 * 9 8 6 11 11 H 1.07998 * 119.99678 * 359.97438 * 10 9 8 12 12 C 1.37868 * 119.99606 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00783 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99666 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47186 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46979 * 120.00126 * 14 12 10 17 17 H 1.48500 * 109.47084 * 239.99849 * 14 12 10 18 18 C 1.39922 * 120.00365 * 5.12955 * 8 6 5 19 19 C 1.38876 * 120.06673 * 290.90294 * 18 8 6 20 20 C 1.38115 * 119.92279 * 179.76190 * 19 18 8 21 21 C 1.38278 * 120.07354 * 0.49147 * 20 19 18 22 22 C 1.38286 * 120.14169 * 359.76209 * 21 20 19 23 23 C 1.38106 * 120.06566 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47120 * 300.00157 * 1 2 3 25 25 H 1.09004 * 109.46956 * 60.00465 * 1 2 3 26 26 H 1.09009 * 109.47210 * 180.02562 * 1 2 3 27 27 H 1.00896 * 110.99969 * 60.00080 * 4 2 1 28 28 H 1.00894 * 110.99510 * 183.95420 * 4 2 1 29 29 H 1.09005 * 109.47463 * 295.00267 * 5 2 1 30 30 H 1.09001 * 109.46939 * 55.00110 * 5 2 1 31 31 H 1.09000 * 109.47005 * 210.00057 * 9 8 6 32 32 H 1.09001 * 109.47041 * 329.99938 * 9 8 6 33 33 H 0.97000 * 120.00705 * 180.02562 * 13 12 10 34 34 H 1.08003 * 120.03695 * 359.97313 * 19 18 8 35 35 H 1.08003 * 119.95728 * 180.25442 * 20 19 18 36 36 H 1.08000 * 119.92595 * 179.74552 * 21 20 19 37 37 H 1.07998 * 119.96440 * 179.97438 * 22 21 20 38 38 H 1.08005 * 120.03344 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0401 -0.7213 -1.2492 6 6 3.5419 -0.6150 -1.3127 7 8 4.1363 0.0674 -0.5051 8 7 4.2247 -1.2781 -2.2669 9 6 5.6897 -1.2662 -2.2615 10 6 6.1985 -2.4267 -1.4457 11 1 5.5004 -3.1049 -0.9777 12 6 7.5551 -2.6224 -1.2969 13 7 8.4052 -1.7962 -1.8663 14 14 8.1858 -4.0613 -0.2862 15 1 7.0352 -4.8359 0.2438 16 1 9.0207 -4.9402 -1.1438 17 1 9.0030 -3.5517 0.8442 18 6 3.5344 -1.9780 -3.2627 19 6 2.8233 -3.1265 -2.9403 20 6 2.1390 -3.8122 -3.9247 21 6 2.1698 -3.3621 -5.2318 22 6 2.8813 -2.2217 -5.5570 23 6 3.5640 -1.5291 -4.5765 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.6962 -1.6479 1.2228 28 1 3.0262 -0.6501 1.2559 29 1 1.7517 -1.7716 -1.2056 30 1 1.6055 -0.2619 -2.1369 31 1 6.0575 -1.3519 -3.2840 32 1 6.0438 -0.3323 -1.8251 33 1 9.3596 -1.9341 -1.7619 34 1 2.8027 -3.4810 -1.9204 35 1 1.5824 -4.7031 -3.6739 36 1 1.6372 -3.9024 -6.0004 37 1 2.9037 -1.8730 -6.5789 38 1 4.1199 -0.6388 -4.8311 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037607344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:25 Heat of formation + Delta-G solvation = -37.016291 kcal Electronic energy + Delta-G solvation = -20003.494475 eV Core-core repulsion = 17037.527268 eV Total energy + Delta-G solvation = -2965.967207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53393 -39.64201 -37.24571 -36.29322 -34.82667 -31.91600 -31.08612 -30.48653 -29.54828 -28.24376 -25.01473 -23.83178 -23.35720 -21.75360 -20.43767 -18.78580 -18.51513 -17.49091 -17.24374 -16.79681 -16.61028 -16.23833 -15.75121 -15.36750 -14.93768 -14.64203 -14.42282 -14.31871 -14.23330 -13.63201 -13.42966 -13.17339 -12.96173 -12.75485 -12.67880 -12.60827 -12.45420 -12.15856 -12.14808 -11.86772 -11.73203 -10.96130 -10.71713 -10.07683 -9.84360 -9.68412 -9.27580 -8.28892 -6.44463 0.35657 0.48895 1.32498 1.34610 1.46216 1.63773 2.15634 2.35965 2.85693 3.01213 3.55158 3.64526 3.88799 4.04422 4.11051 4.28157 4.31361 4.40080 4.59138 4.61440 4.65107 4.65865 4.76432 4.95790 4.98185 5.08211 5.14084 5.20585 5.34089 5.39902 5.52674 5.61416 5.64453 5.73688 5.95851 6.05833 6.20035 6.55381 6.61212 6.69356 7.18930 7.33345 8.78831 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.008078 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.540326 B = 3465.454500 C = 4739.741097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.101 3.899 3 H 0.062 0.938 4 N -0.847 5.847 5 C -0.159 4.159 6 C 0.503 3.497 7 O -0.578 6.578 8 N -0.565 5.565 9 C 0.264 3.736 10 C -0.541 4.541 11 H 0.054 0.946 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.969 3.031 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.279 1.279 18 C 0.125 3.875 19 C -0.133 4.133 20 C -0.102 4.102 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.144 4.144 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.340 0.660 28 H 0.339 0.661 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.015 0.985 32 H 0.004 0.996 33 H 0.268 0.732 34 H 0.115 0.885 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.813 -3.984 -6.066 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.011 4.011 3 H 0.081 0.919 4 N -0.377 5.377 5 C -0.200 4.200 6 C 0.293 3.707 7 O -0.458 6.458 8 N -0.292 5.292 9 C 0.144 3.856 10 C -0.579 4.579 11 H 0.072 0.928 12 C -0.190 4.190 13 N -0.567 5.567 14 Si 0.793 3.207 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.204 1.204 18 C 0.034 3.966 19 C -0.153 4.153 20 C -0.121 4.121 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.164 4.164 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.033 0.967 32 H 0.023 0.977 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.702 -3.013 -5.239 18.705 hybrid contribution 1.898 -0.839 -0.122 2.079 sum -15.804 -3.852 -5.361 17.127 Atomic orbital electron populations 1.21740 0.91370 1.03022 1.02837 1.21279 0.96751 0.97356 0.85761 0.91920 1.59006 1.17262 1.21038 1.40383 1.22658 0.89328 1.04662 1.03396 1.21482 0.91436 0.78160 0.79586 1.90624 1.72302 1.41697 1.41146 1.45833 1.07555 1.49105 1.26694 1.18822 0.74539 0.96265 0.95972 1.21616 0.92231 1.11704 1.32367 0.92778 1.25866 0.96792 0.99566 0.96794 1.70056 1.02902 1.38665 1.45114 0.85339 0.78411 0.78598 0.78327 1.18908 1.19509 1.20444 1.18005 0.96067 0.93661 0.88838 1.21383 0.99385 0.93748 1.00775 1.21367 0.98332 0.99822 0.92550 1.21563 0.99017 0.96229 0.96881 1.21327 0.96088 0.95442 0.99337 1.21392 1.01267 1.01103 0.92607 0.91668 0.90656 0.91448 0.84734 0.84688 0.87649 0.87299 0.96669 0.97748 0.92279 0.86701 0.82740 0.82230 0.83092 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.49 71.98 0.68 -1.93 16 2 C 0.10 2.86 3.04 44.92 0.14 3.00 16 3 H 0.06 2.07 7.87 -2.39 -0.02 2.05 16 4 N -0.85 -26.12 9.20 -168.67 -1.55 -27.68 16 5 C -0.16 -4.70 4.08 29.85 0.12 -4.57 16 6 C 0.50 21.34 7.30 87.66 0.64 21.98 16 7 O -0.58 -29.40 13.91 -3.07 -0.04 -29.44 16 8 N -0.57 -25.26 2.50 -635.28 -1.59 -26.84 16 9 C 0.26 14.75 5.15 85.63 0.44 15.19 16 10 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 11 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 12 C 0.01 0.52 5.46 84.65 0.46 0.99 16 13 N -0.93 -56.84 13.29 21.44 0.28 -56.56 16 14 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 15 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 C 0.12 4.51 4.53 38.15 0.17 4.69 16 19 C -0.13 -4.00 8.27 22.39 0.19 -3.82 16 20 C -0.10 -2.23 10.04 22.25 0.22 -2.01 16 21 C -0.12 -2.30 10.04 22.29 0.22 -2.07 16 22 C -0.10 -2.38 10.04 22.25 0.22 -2.16 16 23 C -0.14 -4.58 9.72 22.39 0.22 -4.36 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.34 9.00 9.00 -89.70 -0.81 8.19 16 28 H 0.34 12.87 7.10 -89.70 -0.64 12.24 16 29 H 0.11 2.77 6.32 -2.38 -0.02 2.75 16 30 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.02 0.89 7.89 -2.39 -0.02 0.87 16 32 H 0.00 0.28 7.36 -2.39 -0.02 0.26 16 33 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.11 3.51 7.62 -2.91 -0.02 3.49 16 35 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.11 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -72.82 320.38 2.72 -70.10 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -0.38 Total: 29.62 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 3.97 Total: -6.48 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -2.86 Total: -111.08 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.04 Total: -29.44 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.82 2.72 -70.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037607344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.083 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds