Wall clock time and date at job start Mon Mar 30 2020 04:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47006 * 2 1 4 4 C 1.46499 * 120.00733 * 278.32459 * 3 2 1 5 5 C 1.50704 * 109.47261 * 270.00472 * 4 3 2 6 6 H 1.08003 * 119.99555 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00190 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00002 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00274 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47028 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46938 * 119.99890 * 9 7 5 12 12 H 1.48497 * 109.47059 * 240.00032 * 9 7 5 13 13 C 1.34785 * 119.99666 * 98.32941 * 3 2 1 14 14 O 1.21554 * 119.99970 * 186.35407 * 13 3 2 15 15 C 1.47842 * 119.99910 * 6.35398 * 13 3 2 16 16 C 1.39579 * 120.14452 * 150.53329 * 15 13 3 17 17 C 1.37957 * 119.85351 * 180.27203 * 16 15 13 18 18 C 1.38366 * 120.14425 * 359.49419 * 17 16 15 19 19 C 1.50692 * 119.85337 * 180.25579 * 18 17 16 20 20 N 1.46901 * 109.47069 * 270.24770 * 19 18 17 21 21 C 1.38357 * 120.29003 * 0.50465 * 18 17 16 22 22 C 1.37959 * 120.14788 * 359.74877 * 21 18 17 23 23 H 1.08992 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46854 * 300.00049 * 1 2 3 25 25 H 1.09000 * 109.46741 * 59.99780 * 1 2 3 26 26 H 1.09003 * 109.47281 * 240.00607 * 2 1 3 27 27 H 1.08994 * 109.47273 * 120.00665 * 2 1 3 28 28 H 1.09003 * 109.46716 * 30.00237 * 4 3 2 29 29 H 1.08998 * 109.47650 * 149.99852 * 4 3 2 30 30 H 0.96997 * 120.00309 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.07429 * 359.97438 * 16 15 13 32 32 H 1.08001 * 119.92759 * 179.71989 * 17 16 15 33 33 H 1.08998 * 109.47703 * 30.24619 * 19 18 17 34 34 H 1.09002 * 109.47395 * 150.24941 * 19 18 17 35 35 H 1.00905 * 111.00306 * 56.04527 * 20 19 18 36 36 H 1.00903 * 111.00511 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.92884 * 179.77235 * 21 18 17 38 38 H 1.08006 * 120.07463 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0894 2.1332 -1.2553 5 6 3.4392 1.9224 -1.8915 6 1 4.1710 1.2916 -1.4088 7 6 3.7397 2.5346 -3.0897 8 7 2.8483 3.3022 -3.6777 9 14 5.4131 2.2739 -3.8780 10 1 6.2280 1.3735 -3.0232 11 1 5.2384 1.6590 -5.2183 12 1 6.1028 3.5813 -4.0192 13 6 2.4024 1.9602 1.1550 14 8 2.6974 3.1392 1.1751 15 6 2.4647 1.1612 2.3974 16 6 3.3794 1.4921 3.3984 17 6 3.4363 0.7390 4.5529 18 6 2.5821 -0.3359 4.7241 19 6 2.6460 -1.1505 5.9903 20 7 3.6066 -2.2484 5.8182 21 6 1.6730 -0.6692 3.7358 22 6 1.6094 0.0725 2.5743 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.3099 1.7840 -1.9325 29 1 1.9453 3.1943 -1.0519 30 1 3.0598 3.7333 -4.5205 31 1 4.0444 2.3329 3.2674 32 1 4.1467 0.9913 5.3263 33 1 2.9652 -0.5145 6.8159 34 1 1.6601 -1.5612 6.2083 35 1 4.5141 -1.8966 5.5519 36 1 3.6680 -2.8097 6.6545 37 1 1.0115 -1.5116 3.8741 38 1 0.8996 -0.1890 1.8033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037825808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:33 Heat of formation + Delta-G solvation = 14.269032 kcal Electronic energy + Delta-G solvation = -19538.503887 eV Core-core repulsion = 16574.760578 eV Total energy + Delta-G solvation = -2963.743309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13474 -38.17096 -35.60524 -34.85279 -32.88119 -31.07074 -30.67538 -29.98399 -27.30393 -25.34971 -23.29061 -22.88186 -22.39548 -21.18554 -19.00487 -16.82462 -16.64906 -16.37960 -16.06112 -15.22408 -14.88722 -14.73005 -14.59592 -14.12250 -13.78440 -13.62891 -13.03985 -12.81796 -12.51508 -12.45825 -12.12472 -11.96397 -11.65832 -11.26521 -11.18069 -10.90044 -10.87355 -10.62774 -10.42908 -10.11222 -9.61533 -9.10566 -8.95547 -8.78371 -8.56161 -8.42647 -7.65097 -6.03690 -4.08509 1.09103 1.47714 3.30515 3.32793 3.38192 3.42814 3.85457 4.12939 4.45337 4.47211 4.66399 4.79429 4.99777 5.06225 5.17470 5.29427 5.30905 5.37371 5.54109 5.59147 5.67825 5.76703 5.93294 6.00899 6.09890 6.25340 6.37112 6.50965 6.55271 6.57640 6.78369 6.98317 7.10891 7.13263 7.46367 7.55146 7.93189 8.24110 8.41219 8.89972 9.07710 9.56677 11.04401 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026084 B = 0.004837 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.187078 B = 5786.939336 C = 6106.887055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.074 3.926 3 N -0.586 5.586 4 C 0.244 3.756 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.545 3.455 14 O -0.540 6.540 15 C -0.114 4.114 16 C -0.067 4.067 17 C -0.125 4.125 18 C -0.078 4.078 19 C 0.102 3.898 20 N -0.846 5.846 21 C -0.110 4.110 22 C -0.123 4.123 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.344 0.656 36 H 0.341 0.659 37 H 0.125 0.875 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 -11.095 16.851 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.050 4.050 3 N -0.317 5.317 4 C 0.125 3.875 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.332 3.668 14 O -0.418 6.418 15 C -0.118 4.118 16 C -0.086 4.086 17 C -0.144 4.144 18 C -0.079 4.079 19 C -0.028 4.028 20 N -0.376 5.376 21 C -0.128 4.128 22 C -0.140 4.140 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.181 -10.601 16.078 19.519 hybrid contribution 1.480 0.334 0.169 1.526 sum -1.701 -10.267 16.246 19.294 Atomic orbital electron populations 1.22287 0.96614 1.01820 1.02794 1.22264 0.93685 0.84881 1.04161 1.48123 1.61604 1.13240 1.08722 1.19319 0.97103 0.92750 0.78279 1.21486 0.99783 1.29651 1.05662 0.92372 1.24932 0.97300 0.94900 0.96945 1.69945 1.34315 1.31239 1.17830 0.86441 0.83967 0.78049 0.78975 1.19784 1.20935 1.20858 1.18212 0.78388 0.86992 0.83192 1.90737 1.49655 1.15700 1.85747 1.20297 0.98509 0.97018 0.95928 1.21213 0.97003 0.98477 0.91927 1.20925 0.99570 0.96008 0.97847 1.19870 0.96398 0.95575 0.96032 1.20708 0.97496 0.91328 0.93318 1.58707 1.13636 1.24278 1.40965 1.20947 0.99073 0.99744 0.93048 1.22508 0.99659 0.93887 0.97965 0.91717 0.92421 0.91325 0.90243 0.88676 0.94805 0.93617 0.92766 0.85057 0.86162 0.94696 0.90179 0.84375 0.84603 0.85728 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.13 37.16 0.34 -2.11 16 2 C 0.07 1.24 5.58 -4.04 -0.02 1.21 16 3 N -0.59 -12.92 2.46 -176.17 -0.43 -13.36 16 4 C 0.24 6.52 5.22 -5.19 -0.03 6.49 16 5 C -0.53 -15.18 9.39 -34.44 -0.32 -15.51 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 9 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.54 12.19 7.46 -12.33 -0.09 12.10 16 14 O -0.54 -14.27 16.25 5.32 0.09 -14.18 16 15 C -0.11 -2.01 5.59 -104.97 -0.59 -2.60 16 16 C -0.07 -1.07 9.60 -39.18 -0.38 -1.44 16 17 C -0.12 -1.56 9.68 -39.64 -0.38 -1.94 16 18 C -0.08 -0.90 5.40 -104.54 -0.56 -1.46 16 19 C 0.10 0.87 6.90 -4.98 -0.03 0.84 16 20 N -0.85 -6.86 9.61 -11.41 -0.11 -6.97 16 21 C -0.11 -1.33 9.68 -39.64 -0.38 -1.71 16 22 C -0.12 -1.75 7.49 -39.18 -0.29 -2.04 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.77 7.07 -51.93 -0.37 0.40 16 25 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 26 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 27 H 0.10 1.42 4.02 -52.11 -0.21 1.21 16 28 H 0.03 0.90 7.87 -51.93 -0.41 0.49 16 29 H 0.05 1.37 7.34 -51.93 -0.38 0.99 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.13 2.14 7.92 -52.49 -0.42 1.73 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.03 0.26 8.08 -51.93 -0.42 -0.16 16 34 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.34 2.70 8.99 -39.29 -0.35 2.35 16 36 H 0.34 1.99 9.08 -39.29 -0.36 1.63 16 37 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.16 2.11 2.52 -52.48 -0.13 1.98 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -33.84 316.47 -7.93 -41.77 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.11 Total: 3.47 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.85 Total: -6.50 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.19 Total: -46.38 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.18 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.84 -7.93 -41.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.037 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds