Wall clock time and date at job start Mon Mar 30 2020 04:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47006 * 2 1 4 4 C 1.46499 * 120.00733 * 278.32459 * 3 2 1 5 5 C 1.50704 * 109.47261 * 270.00472 * 4 3 2 6 6 H 1.08003 * 119.99555 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00190 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00002 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00274 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47028 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46938 * 119.99890 * 9 7 5 12 12 H 1.48497 * 109.47059 * 240.00032 * 9 7 5 13 13 C 1.34785 * 119.99666 * 98.32941 * 3 2 1 14 14 O 1.21554 * 119.99970 * 186.35407 * 13 3 2 15 15 C 1.47842 * 119.99910 * 6.35398 * 13 3 2 16 16 C 1.39579 * 120.14452 * 150.53329 * 15 13 3 17 17 C 1.37957 * 119.85351 * 180.27203 * 16 15 13 18 18 C 1.38366 * 120.14425 * 359.49419 * 17 16 15 19 19 C 1.50692 * 119.85337 * 180.25579 * 18 17 16 20 20 N 1.46901 * 109.47069 * 270.24770 * 19 18 17 21 21 C 1.38357 * 120.29003 * 0.50465 * 18 17 16 22 22 C 1.37959 * 120.14788 * 359.74877 * 21 18 17 23 23 H 1.08992 * 109.47087 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46854 * 300.00049 * 1 2 3 25 25 H 1.09000 * 109.46741 * 59.99780 * 1 2 3 26 26 H 1.09003 * 109.47281 * 240.00607 * 2 1 3 27 27 H 1.08994 * 109.47273 * 120.00665 * 2 1 3 28 28 H 1.09003 * 109.46716 * 30.00237 * 4 3 2 29 29 H 1.08998 * 109.47650 * 149.99852 * 4 3 2 30 30 H 0.96997 * 120.00309 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.07429 * 359.97438 * 16 15 13 32 32 H 1.08001 * 119.92759 * 179.71989 * 17 16 15 33 33 H 1.08998 * 109.47703 * 30.24619 * 19 18 17 34 34 H 1.09002 * 109.47395 * 150.24941 * 19 18 17 35 35 H 1.00905 * 111.00306 * 56.04527 * 20 19 18 36 36 H 1.00903 * 111.00511 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.92884 * 179.77235 * 21 18 17 38 38 H 1.08006 * 120.07463 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0894 2.1332 -1.2553 5 6 3.4392 1.9224 -1.8915 6 1 4.1710 1.2916 -1.4088 7 6 3.7397 2.5346 -3.0897 8 7 2.8483 3.3022 -3.6777 9 14 5.4131 2.2739 -3.8780 10 1 6.2280 1.3735 -3.0232 11 1 5.2384 1.6590 -5.2183 12 1 6.1028 3.5813 -4.0192 13 6 2.4024 1.9602 1.1550 14 8 2.6974 3.1392 1.1751 15 6 2.4647 1.1612 2.3974 16 6 3.3794 1.4921 3.3984 17 6 3.4363 0.7390 4.5529 18 6 2.5821 -0.3359 4.7241 19 6 2.6460 -1.1505 5.9903 20 7 3.6066 -2.2484 5.8182 21 6 1.6730 -0.6692 3.7358 22 6 1.6094 0.0725 2.5743 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.3099 1.7840 -1.9325 29 1 1.9453 3.1943 -1.0519 30 1 3.0598 3.7333 -4.5205 31 1 4.0444 2.3329 3.2674 32 1 4.1467 0.9913 5.3263 33 1 2.9652 -0.5145 6.8159 34 1 1.6601 -1.5612 6.2083 35 1 4.5141 -1.8966 5.5519 36 1 3.6680 -2.8097 6.6545 37 1 1.0115 -1.5116 3.8741 38 1 0.8996 -0.1890 1.8033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037825808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:33 Heat of formation + Delta-G solvation = -9.789086 kcal Electronic energy + Delta-G solvation = -19539.547126 eV Core-core repulsion = 16574.760578 eV Total energy + Delta-G solvation = -2964.786547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53724 -39.51701 -37.29667 -35.77903 -34.90992 -32.49030 -31.76421 -31.27446 -29.20377 -26.53822 -25.00477 -24.23377 -23.59703 -22.33748 -20.54651 -18.68693 -18.21859 -17.70452 -17.30671 -16.60843 -16.21659 -16.13328 -15.75732 -15.58804 -15.07384 -14.80439 -14.40218 -14.36162 -13.87818 -13.57284 -13.45359 -13.31735 -13.22950 -13.06710 -12.73758 -12.56793 -12.24202 -12.21964 -12.03338 -11.73181 -11.65611 -10.74119 -10.67961 -9.90380 -9.80814 -9.54868 -9.45243 -8.25845 -6.41415 -0.08058 0.41059 1.34310 1.36685 1.48951 1.85630 2.24275 2.40011 2.81750 3.03402 3.55005 3.80601 3.83018 3.95238 4.03257 4.11302 4.30182 4.35675 4.44778 4.55594 4.68079 4.70507 4.83585 4.90162 4.94208 5.00539 5.08672 5.14926 5.31929 5.35871 5.45006 5.53287 5.56768 5.79627 5.94875 6.01942 6.23382 6.63643 6.64390 6.70411 7.21471 7.37295 8.81748 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026084 B = 0.004837 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.187078 B = 5786.939336 C = 6106.887055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.067 3.933 3 N -0.592 5.592 4 C 0.260 3.740 5 C -0.547 4.547 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.970 3.030 10 H -0.268 1.268 11 H -0.266 1.266 12 H -0.280 1.280 13 C 0.535 3.465 14 O -0.600 6.600 15 C -0.144 4.144 16 C -0.086 4.086 17 C -0.117 4.117 18 C -0.065 4.065 19 C 0.104 3.896 20 N -0.854 5.854 21 C -0.103 4.103 22 C -0.120 4.120 23 H 0.108 0.892 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.122 0.878 28 H 0.028 0.972 29 H -0.002 1.002 30 H 0.268 0.732 31 H 0.112 0.888 32 H 0.149 0.851 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.345 0.655 36 H 0.356 0.644 37 H 0.159 0.841 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 -14.269 18.869 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.055 4.055 3 N -0.321 5.321 4 C 0.139 3.861 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.794 3.206 10 H -0.193 1.193 11 H -0.191 1.191 12 H -0.205 1.205 13 C 0.325 3.675 14 O -0.483 6.483 15 C -0.148 4.148 16 C -0.105 4.105 17 C -0.135 4.135 18 C -0.066 4.066 19 C -0.026 4.026 20 N -0.386 5.386 21 C -0.121 4.121 22 C -0.137 4.137 23 H 0.127 0.873 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.045 0.955 29 H 0.016 0.984 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.166 0.834 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.157 0.843 36 H 0.170 0.830 37 H 0.176 0.824 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.040 -13.835 18.115 22.995 hybrid contribution 1.396 1.277 -0.344 1.923 sum -1.644 -12.557 17.770 21.821 Atomic orbital electron populations 1.22237 0.93971 1.04408 1.02072 1.22647 0.95828 0.81923 1.05060 1.48141 1.61747 1.14990 1.07224 1.18775 0.96294 0.90795 0.80216 1.21713 1.00467 1.30067 1.06303 0.93092 1.25874 1.01490 0.94263 0.97386 1.70058 1.36442 1.31788 1.18341 0.85329 0.78695 0.78091 0.78456 1.19268 1.19079 1.20541 1.19082 0.76917 0.86805 0.84688 1.90676 1.52312 1.18424 1.86910 1.19973 1.01693 0.98765 0.94324 1.21222 0.97071 0.98987 0.93199 1.21174 1.00036 0.95465 0.96845 1.20319 0.94648 0.94692 0.96916 1.20744 0.98638 0.91454 0.91785 1.58683 1.13653 1.24186 1.42076 1.21331 0.99168 0.99790 0.91800 1.22556 0.98926 0.92856 0.99399 0.87340 0.91796 0.93440 0.91026 0.86080 0.95452 0.98398 0.92262 0.87034 0.83366 0.93108 0.88678 0.84281 0.82967 0.82356 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 9.13 71.98 0.66 -3.81 16 2 C 0.07 2.24 5.58 86.38 0.48 2.72 16 3 N -0.59 -27.43 2.46 -829.56 -2.04 -29.48 16 4 C 0.26 14.82 5.22 85.63 0.45 15.27 16 5 C -0.55 -32.91 9.39 25.60 0.24 -32.67 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.53 5.46 84.65 0.46 1.00 16 8 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 9 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.53 25.42 7.46 86.78 0.65 26.06 16 14 O -0.60 -34.45 16.25 -3.88 -0.06 -34.51 16 15 C -0.14 -5.16 5.59 -20.09 -0.11 -5.28 16 16 C -0.09 -2.75 9.60 22.53 0.22 -2.54 16 17 C -0.12 -2.65 9.68 22.23 0.22 -2.44 16 18 C -0.06 -1.25 5.40 -19.81 -0.11 -1.35 16 19 C 0.10 1.28 6.90 85.55 0.59 1.87 16 20 N -0.85 -10.19 9.61 -190.02 -1.83 -12.01 16 21 C -0.10 -2.08 9.68 22.23 0.22 -1.86 16 22 C -0.12 -3.19 7.49 22.53 0.17 -3.02 16 23 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.06 1.62 7.07 -2.39 -0.02 1.60 16 25 H 0.05 1.46 7.94 -2.39 -0.02 1.44 16 26 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 27 H 0.12 3.45 4.02 -2.55 -0.01 3.44 16 28 H 0.03 1.56 7.87 -2.39 -0.02 1.54 16 29 H 0.00 -0.14 7.34 -2.39 -0.02 -0.16 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.11 3.91 7.92 -2.91 -0.02 3.89 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 34 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 35 H 0.34 4.12 8.99 -89.69 -0.81 3.31 16 36 H 0.36 2.65 9.08 -89.69 -0.81 1.84 16 37 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 38 H 0.17 4.09 2.52 -2.91 -0.01 4.08 16 Total: -1.00 -79.03 316.47 1.97 -77.05 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -0.53 Total: 13.96 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 4.12 Total: -6.05 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.59 Total: -98.49 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.06 Total: -34.51 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -79.03 1.97 -77.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037825808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.265 kcal (2) G-P(sol) polarization free energy of solvation -79.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds