Wall clock time and date at job start Mon Mar 30 2020 04:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46801 * 2 1 4 4 H 1.08994 * 109.47335 * 55.00462 * 3 2 1 5 5 N 1.46903 * 109.47287 * 294.99851 * 3 2 1 6 6 C 1.50704 * 109.46780 * 174.99888 * 3 2 1 7 7 O 1.21298 * 119.99615 * 99.99865 * 6 3 2 8 8 N 1.34773 * 120.00010 * 280.00236 * 6 3 2 9 9 C 1.37091 * 120.00112 * 359.97438 * 8 6 3 10 10 H 1.07998 * 120.00253 * 317.71300 * 9 8 6 11 11 C 1.38951 * 119.99826 * 137.70826 * 9 8 6 12 12 N 1.31416 * 120.00031 * 158.93528 * 11 9 8 13 13 Si 1.86804 * 120.00289 * 338.93569 * 11 9 8 14 14 H 1.48500 * 109.46950 * 95.22077 * 13 11 9 15 15 H 1.48495 * 109.47245 * 215.22566 * 13 11 9 16 16 H 1.48503 * 109.46648 * 335.22498 * 13 11 9 17 17 C 1.46505 * 119.99617 * 180.02562 * 8 6 3 18 18 C 1.50692 * 109.47141 * 84.14135 * 17 8 6 19 19 C 1.38230 * 120.00188 * 268.48334 * 18 17 8 20 20 C 1.38241 * 120.00215 * 179.76509 * 19 18 17 21 21 C 1.38233 * 119.99800 * 0.48968 * 20 19 18 22 22 C 1.38241 * 120.00051 * 359.78955 * 21 20 19 23 23 C 1.38230 * 119.99847 * 359.95319 * 22 21 20 24 24 H 1.09001 * 109.47081 * 60.00101 * 1 2 3 25 25 H 1.08997 * 109.47085 * 300.00070 * 1 2 3 26 26 H 1.09004 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47012 * 120.00081 * 2 1 3 28 28 H 1.09002 * 109.46745 * 240.00243 * 2 1 3 29 29 H 1.00900 * 110.99888 * 300.00240 * 5 3 2 30 30 H 1.00896 * 110.99824 * 63.95891 * 5 3 2 31 31 H 0.96998 * 119.99958 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.46572 * 204.14160 * 17 8 6 33 33 H 1.09003 * 109.47055 * 324.13960 * 17 8 6 34 34 H 1.08002 * 120.00081 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.99960 * 180.25614 * 20 19 18 36 36 H 1.07998 * 120.00336 * 179.76419 * 21 20 19 37 37 H 1.08002 * 119.99659 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.00047 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6513 2.0993 -1.2553 6 6 3.5419 1.4443 0.1239 7 8 4.2315 1.5973 -0.8622 8 7 4.1188 1.2759 1.3302 9 6 3.3393 1.1034 2.4447 10 1 2.4552 1.7078 2.5841 11 6 3.6868 0.1510 3.3949 12 7 3.2231 0.2463 4.6208 13 14 4.8130 -1.2649 2.9298 14 1 6.2132 -0.9211 3.2857 15 1 4.4011 -2.4873 3.6654 16 1 4.7201 -1.5117 1.4684 17 6 5.5789 1.2782 1.4506 18 6 6.0722 2.6984 1.5532 19 6 6.4264 3.3913 0.4108 20 6 6.8743 4.6958 0.5045 21 6 6.9776 5.3039 1.7416 22 6 6.6288 4.6090 2.8847 23 6 6.1759 3.3064 2.7904 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.0422 1.6180 -2.0513 30 1 0.6476 2.1684 -1.3315 31 1 3.4660 -0.4184 5.2842 32 1 5.8705 0.7267 2.3444 33 1 6.0166 0.8041 0.5721 34 1 6.3493 2.9150 -0.5554 35 1 7.1472 5.2385 -0.3884 36 1 7.3311 6.3217 1.8153 37 1 6.7099 5.0840 3.8512 38 1 5.9037 2.7633 3.6835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038101680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:26 Heat of formation + Delta-G solvation = -8.466425 kcal Electronic energy + Delta-G solvation = -20366.594963 eV Core-core repulsion = 17401.865771 eV Total energy + Delta-G solvation = -2964.729192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.41199 -38.24666 -35.49176 -34.76195 -32.21568 -30.91856 -30.31525 -30.25292 -26.78305 -25.33868 -24.22259 -21.95232 -21.42650 -20.57811 -18.97062 -17.19651 -16.79967 -15.93221 -15.50231 -14.71908 -14.63598 -14.31239 -14.23717 -14.01116 -13.54437 -13.41268 -12.85549 -12.78947 -12.60716 -12.33392 -11.97088 -11.69020 -11.58535 -11.35132 -10.98663 -10.91568 -10.79024 -10.48614 -10.37738 -10.16989 -10.06945 -9.24490 -8.71854 -8.34571 -8.23886 -8.02970 -7.77417 -6.53622 -4.16263 1.87599 1.98214 3.00417 3.16591 3.24293 3.71943 4.06662 4.15826 4.58436 4.85330 5.26064 5.39694 5.41538 5.47428 5.50703 5.53380 5.61522 5.75182 5.90286 6.03430 6.07412 6.14615 6.17814 6.23622 6.35684 6.40519 6.56023 6.60889 6.65095 6.72379 7.01764 7.02244 7.29380 7.33468 7.57730 7.59592 7.94612 8.05716 8.20702 8.92724 9.31465 9.66835 10.56522 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.009346 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.661548 B = 2995.239210 C = 4102.727452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.094 3.906 4 H 0.101 0.899 5 N -0.832 5.832 6 C 0.498 3.502 7 O -0.585 6.585 8 N -0.461 5.461 9 C -0.340 4.340 10 H 0.101 0.899 11 C 0.072 3.928 12 N -0.856 5.856 13 Si 0.863 3.137 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.260 1.260 17 C 0.139 3.861 18 C -0.085 4.085 19 C -0.096 4.096 20 C -0.133 4.133 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.093 4.093 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.342 0.658 30 H 0.335 0.665 31 H 0.275 0.725 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 2.179 -4.498 5.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C -0.021 4.021 4 H 0.119 0.881 5 N -0.363 5.363 6 C 0.287 3.713 7 O -0.468 6.468 8 N -0.182 5.182 9 C -0.468 4.468 10 H 0.119 0.881 11 C -0.135 4.135 12 N -0.491 5.491 13 Si 0.690 3.310 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.184 1.184 17 C 0.017 3.983 18 C -0.086 4.086 19 C -0.115 4.115 20 C -0.151 4.151 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.112 4.112 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.915 2.798 -4.487 5.624 hybrid contribution -0.026 -1.660 -0.016 1.660 sum 1.889 1.138 -4.503 5.014 Atomic orbital electron populations 1.21751 0.95981 1.01340 1.01374 1.22114 0.95697 0.97796 1.03238 1.21115 0.93713 0.93694 0.93533 0.88081 1.58632 1.14802 1.58792 1.04040 1.20302 0.89645 0.78819 0.82566 1.90495 1.64863 1.53968 1.37515 1.43659 1.03233 1.64688 1.06591 1.18988 1.10227 1.19980 0.97562 0.88110 1.25343 0.96516 0.97072 0.94601 1.69768 1.43613 1.34329 1.01406 0.87098 0.80833 0.82878 0.80212 1.19919 1.21189 1.18391 1.20593 0.83772 0.92428 1.01546 1.20297 0.97704 0.97474 0.93172 1.21225 0.97238 0.94358 0.98638 1.21044 1.01480 0.95385 0.97153 1.21014 1.01524 0.99307 0.92946 1.21051 1.00822 0.94971 0.98049 1.21157 0.97377 0.94887 0.97760 0.93559 0.92192 0.92952 0.89492 0.92801 0.84439 0.85197 0.91479 0.90558 0.91053 0.85582 0.86836 0.86974 0.86689 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.68 37.16 0.36 -1.71 16 2 C -0.15 -2.60 5.49 -26.73 -0.15 -2.75 16 3 C 0.09 1.82 2.51 -68.86 -0.17 1.65 16 4 H 0.10 2.07 6.72 -51.93 -0.35 1.72 16 5 N -0.83 -14.25 8.94 -5.65 -0.05 -14.30 16 6 C 0.50 11.40 6.84 -10.99 -0.08 11.32 16 7 O -0.59 -14.20 14.76 5.54 0.08 -14.12 16 8 N -0.46 -10.79 2.08 -116.10 -0.24 -11.04 16 9 C -0.34 -8.42 8.05 -14.94 -0.12 -8.54 16 10 H 0.10 2.66 6.88 -52.49 -0.36 2.30 16 11 C 0.07 1.81 5.25 -17.47 -0.09 1.72 16 12 N -0.86 -22.52 13.96 55.50 0.77 -21.75 16 13 Si 0.86 19.58 25.23 -169.99 -4.29 15.29 16 14 H -0.27 -6.02 6.74 56.52 0.38 -5.64 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 17 C 0.14 3.10 4.08 -5.20 -0.02 3.08 16 18 C -0.09 -1.77 5.41 -104.63 -0.57 -2.34 16 19 C -0.10 -1.87 9.32 -39.58 -0.37 -2.24 16 20 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 21 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 22 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 23 C -0.09 -1.84 9.71 -39.58 -0.38 -2.22 16 24 H 0.05 0.56 6.87 -51.93 -0.36 0.21 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.73 7.27 -51.93 -0.38 1.35 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.34 5.79 8.58 -39.29 -0.34 5.45 16 30 H 0.34 4.72 7.55 -39.29 -0.30 4.42 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.08 1.71 4.10 -51.93 -0.21 1.50 16 33 H 0.07 1.56 7.54 -51.93 -0.39 1.17 16 34 H 0.13 2.53 7.27 -52.49 -0.38 2.15 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -27.78 310.14 -7.01 -34.79 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -5.18 Total: 16.21 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.78 Total: -9.76 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.48 Total: -47.08 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.29 Total: 15.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.78 -7.01 -34.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038101680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.322 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds