Wall clock time and date at job start Mon Mar 30 2020 04:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46801 * 2 1 4 4 H 1.08994 * 109.47335 * 55.00462 * 3 2 1 5 5 N 1.46903 * 109.47287 * 294.99851 * 3 2 1 6 6 C 1.50704 * 109.46780 * 174.99888 * 3 2 1 7 7 O 1.21298 * 119.99615 * 99.99865 * 6 3 2 8 8 N 1.34773 * 120.00010 * 280.00236 * 6 3 2 9 9 C 1.37091 * 120.00112 * 359.97438 * 8 6 3 10 10 H 1.07998 * 120.00253 * 317.71300 * 9 8 6 11 11 C 1.38951 * 119.99826 * 137.70826 * 9 8 6 12 12 N 1.31416 * 120.00031 * 158.93528 * 11 9 8 13 13 Si 1.86804 * 120.00289 * 338.93569 * 11 9 8 14 14 H 1.48500 * 109.46950 * 95.22077 * 13 11 9 15 15 H 1.48495 * 109.47245 * 215.22566 * 13 11 9 16 16 H 1.48503 * 109.46648 * 335.22498 * 13 11 9 17 17 C 1.46505 * 119.99617 * 180.02562 * 8 6 3 18 18 C 1.50692 * 109.47141 * 84.14135 * 17 8 6 19 19 C 1.38230 * 120.00188 * 268.48334 * 18 17 8 20 20 C 1.38241 * 120.00215 * 179.76509 * 19 18 17 21 21 C 1.38233 * 119.99800 * 0.48968 * 20 19 18 22 22 C 1.38241 * 120.00051 * 359.78955 * 21 20 19 23 23 C 1.38230 * 119.99847 * 359.95319 * 22 21 20 24 24 H 1.09001 * 109.47081 * 60.00101 * 1 2 3 25 25 H 1.08997 * 109.47085 * 300.00070 * 1 2 3 26 26 H 1.09004 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47012 * 120.00081 * 2 1 3 28 28 H 1.09002 * 109.46745 * 240.00243 * 2 1 3 29 29 H 1.00900 * 110.99888 * 300.00240 * 5 3 2 30 30 H 1.00896 * 110.99824 * 63.95891 * 5 3 2 31 31 H 0.96998 * 119.99958 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.46572 * 204.14160 * 17 8 6 33 33 H 1.09003 * 109.47055 * 324.13960 * 17 8 6 34 34 H 1.08002 * 120.00081 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.99960 * 180.25614 * 20 19 18 36 36 H 1.07998 * 120.00336 * 179.76419 * 21 20 19 37 37 H 1.08002 * 119.99659 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.00047 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6513 2.0993 -1.2553 6 6 3.5419 1.4443 0.1239 7 8 4.2315 1.5973 -0.8622 8 7 4.1188 1.2759 1.3302 9 6 3.3393 1.1034 2.4447 10 1 2.4552 1.7078 2.5841 11 6 3.6868 0.1510 3.3949 12 7 3.2231 0.2463 4.6208 13 14 4.8130 -1.2649 2.9298 14 1 6.2132 -0.9211 3.2857 15 1 4.4011 -2.4873 3.6654 16 1 4.7201 -1.5117 1.4684 17 6 5.5789 1.2782 1.4506 18 6 6.0722 2.6984 1.5532 19 6 6.4264 3.3913 0.4108 20 6 6.8743 4.6958 0.5045 21 6 6.9776 5.3039 1.7416 22 6 6.6288 4.6090 2.8847 23 6 6.1759 3.3064 2.7904 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.0422 1.6180 -2.0513 30 1 0.6476 2.1684 -1.3315 31 1 3.4660 -0.4184 5.2842 32 1 5.8705 0.7267 2.3444 33 1 6.0166 0.8041 0.5721 34 1 6.3493 2.9150 -0.5554 35 1 7.1472 5.2385 -0.3884 36 1 7.3311 6.3217 1.8153 37 1 6.7099 5.0840 3.8512 38 1 5.9037 2.7633 3.6835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038101680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:25 Heat of formation + Delta-G solvation = -25.717877 kcal Electronic energy + Delta-G solvation = -20367.343042 eV Core-core repulsion = 17401.865771 eV Total energy + Delta-G solvation = -2965.477271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11912 -39.74594 -37.09405 -36.51831 -34.10233 -32.50959 -31.72236 -31.59809 -28.33951 -27.16119 -25.84811 -23.37594 -22.88070 -22.06969 -20.81576 -18.92237 -18.48073 -17.44782 -17.29863 -16.29409 -16.26342 -15.88056 -15.73084 -15.50343 -15.17029 -14.91664 -14.49119 -14.34665 -14.18818 -13.92804 -13.48938 -13.28967 -13.13611 -12.92817 -12.68951 -12.44317 -12.28341 -11.99671 -11.96680 -11.77862 -11.73285 -11.12291 -10.48914 -9.77316 -9.72144 -9.63254 -9.49832 -8.51215 -6.14881 0.44612 0.55804 1.16525 1.28696 1.38621 1.91512 2.16836 2.52843 2.93995 3.06161 3.82246 3.88853 3.97809 4.07142 4.12726 4.17436 4.21139 4.32258 4.34380 4.50868 4.65219 4.65609 4.74296 4.80755 4.87001 5.10334 5.13999 5.21771 5.24873 5.35529 5.43005 5.62249 5.63393 5.81918 6.04606 6.17687 6.23166 6.24739 6.68432 6.97713 7.42408 7.80147 8.62365 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.009346 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.661548 B = 2995.239210 C = 4102.727452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.143 4.143 3 C 0.101 3.899 4 H 0.088 0.912 5 N -0.832 5.832 6 C 0.487 3.513 7 O -0.601 6.601 8 N -0.468 5.468 9 C -0.331 4.331 10 H 0.078 0.922 11 C 0.045 3.955 12 N -0.889 5.889 13 Si 0.908 3.092 14 H -0.264 1.264 15 H -0.280 1.280 16 H -0.268 1.268 17 C 0.138 3.862 18 C -0.109 4.109 19 C -0.112 4.112 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.114 4.114 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.346 0.654 30 H 0.354 0.646 31 H 0.279 0.721 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 3.416 -5.284 6.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 C -0.014 4.014 4 H 0.106 0.894 5 N -0.365 5.365 6 C 0.277 3.723 7 O -0.486 6.486 8 N -0.189 5.189 9 C -0.458 4.458 10 H 0.096 0.904 11 C -0.160 4.160 12 N -0.526 5.526 13 Si 0.733 3.267 14 H -0.190 1.190 15 H -0.206 1.206 16 H -0.192 1.192 17 C 0.016 3.984 18 C -0.110 4.110 19 C -0.131 4.131 20 C -0.147 4.147 21 C -0.136 4.136 22 C -0.146 4.146 23 C -0.133 4.133 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.198 4.035 -5.276 6.996 hybrid contribution -0.092 -1.935 0.181 1.945 sum 2.106 2.101 -5.094 5.899 Atomic orbital electron populations 1.21703 0.93018 1.02683 1.02296 1.22048 0.98250 0.96016 1.01962 1.20964 0.91272 0.94953 0.94196 0.89425 1.58545 1.16433 1.58441 1.03041 1.20967 0.91215 0.78021 0.82112 1.90471 1.65699 1.54604 1.37813 1.43752 1.03738 1.64909 1.06466 1.18743 1.09749 1.19485 0.97843 0.90409 1.25704 0.97603 0.98370 0.94364 1.69815 1.45278 1.35302 1.02158 0.86395 0.80084 0.80889 0.79328 1.18997 1.20599 1.19246 1.20569 0.83145 0.93916 1.00791 1.20224 0.99596 0.96883 0.94325 1.21210 0.98575 0.95794 0.97509 1.21412 0.99978 0.94228 0.99049 1.21476 0.99527 1.00853 0.91770 1.21396 0.99375 0.93718 1.00076 1.21151 0.99006 0.96432 0.96680 0.91149 0.92721 0.91444 0.92385 0.92386 0.84061 0.83021 0.91078 0.91322 0.91555 0.86928 0.83820 0.82762 0.83878 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.68 71.98 0.70 -3.01 16 2 C -0.14 -4.96 5.49 30.60 0.17 -4.79 16 3 C 0.10 3.92 2.51 44.17 0.11 4.03 16 4 H 0.09 3.66 6.72 -2.39 -0.02 3.64 16 5 N -0.83 -27.52 8.94 -171.80 -1.54 -29.05 16 6 C 0.49 22.67 6.84 87.66 0.60 23.27 16 7 O -0.60 -29.51 14.76 -3.09 -0.05 -29.56 16 8 N -0.47 -22.51 2.08 -639.60 -1.33 -23.84 16 9 C -0.33 -16.90 8.05 84.04 0.68 -16.22 16 10 H 0.08 4.29 6.88 -2.91 -0.02 4.27 16 11 C 0.04 2.30 5.25 84.93 0.45 2.74 16 12 N -0.89 -47.73 13.96 21.66 0.30 -47.43 16 13 Si 0.91 41.04 25.23 68.60 1.73 42.77 16 14 H -0.26 -11.49 6.74 99.48 0.67 -10.82 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 17 C 0.14 6.32 4.08 85.63 0.35 6.67 16 18 C -0.11 -4.60 5.41 -19.87 -0.11 -4.71 16 19 C -0.11 -4.34 9.32 22.27 0.21 -4.13 16 20 C -0.13 -4.02 10.05 22.27 0.22 -3.79 16 21 C -0.12 -3.33 10.05 22.27 0.22 -3.10 16 22 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 23 C -0.11 -4.49 9.71 22.27 0.22 -4.28 16 24 H 0.07 1.52 6.87 -2.39 -0.02 1.51 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.06 2.35 7.27 -2.39 -0.02 2.33 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.35 11.25 8.58 -89.69 -0.77 10.48 16 30 H 0.35 9.26 7.55 -89.70 -0.68 8.58 16 31 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.07 3.17 4.10 -2.39 -0.01 3.16 16 33 H 0.07 3.01 7.54 -2.39 -0.02 2.99 16 34 H 0.11 4.58 7.27 -2.91 -0.02 4.56 16 35 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 36 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -60.59 310.14 2.75 -57.83 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -0.40 Total: 40.42 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 4.03 Total: -11.15 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -2.56 Total: -100.32 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.05 Total: -29.56 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.73 Total: 42.77 kcal Total: -60.59 2.75 -57.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038101680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.117 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds