Wall clock time and date at job start Mon Mar 30 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46813 * 2 1 4 4 N 1.46893 * 109.47687 * 239.99515 * 2 1 3 5 5 C 1.53007 * 109.46984 * 119.99563 * 2 1 3 6 6 C 1.50701 * 109.46957 * 185.00605 * 5 2 1 7 7 O 1.21288 * 120.00022 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99741 * 180.02562 * 6 5 2 9 9 C 1.37094 * 120.00097 * 359.97438 * 8 6 5 10 10 H 1.08008 * 119.99935 * 37.61360 * 9 8 6 11 11 C 1.38950 * 120.00254 * 217.60705 * 9 8 6 12 12 N 1.31409 * 119.99693 * 20.34729 * 11 9 8 13 13 Si 1.86792 * 120.00515 * 200.34265 * 11 9 8 14 14 H 1.48503 * 109.47071 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47414 * 120.00180 * 13 11 9 16 16 H 1.48499 * 109.47607 * 240.00408 * 13 11 9 17 17 C 1.46507 * 119.99695 * 180.27300 * 8 6 5 18 18 C 1.50701 * 109.46744 * 275.60136 * 17 8 6 19 19 C 1.38235 * 120.00049 * 274.58257 * 18 17 8 20 20 C 1.38238 * 119.99906 * 179.77389 * 19 18 17 21 21 C 1.38233 * 119.99895 * 0.50060 * 20 19 18 22 22 C 1.38233 * 119.99995 * 359.75165 * 21 20 19 23 23 C 1.38233 * 119.99885 * 94.85706 * 18 17 8 24 24 H 1.08990 * 109.47123 * 300.00195 * 1 2 3 25 25 H 1.08997 * 109.46947 * 60.00705 * 1 2 3 26 26 H 1.09005 * 109.46923 * 180.02562 * 1 2 3 27 27 H 1.00901 * 111.00327 * 300.00289 * 4 2 1 28 28 H 1.00900 * 110.99726 * 63.95397 * 4 2 1 29 29 H 1.08994 * 109.47158 * 65.00514 * 5 2 1 30 30 H 1.09000 * 109.47062 * 305.00329 * 5 2 1 31 31 H 0.96999 * 120.00403 * 179.97438 * 12 11 9 32 32 H 1.08992 * 109.47197 * 35.60283 * 17 8 6 33 33 H 1.08996 * 109.46464 * 155.60394 * 17 8 6 34 34 H 1.08001 * 120.00108 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.99471 * 180.23224 * 20 19 18 36 36 H 1.08000 * 119.99948 * 179.73047 * 21 20 19 37 37 H 1.08000 * 119.99964 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.00340 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1993 5 6 2.0400 -0.7212 1.2494 6 6 3.5419 -0.6147 1.3129 7 8 4.1451 -0.0209 0.4442 8 7 4.2149 -1.1802 2.3346 9 6 3.5332 -1.8519 3.3162 10 1 2.6714 -2.4512 3.0618 11 6 3.9509 -1.7617 4.6383 12 7 4.7121 -0.7609 5.0200 13 14 3.4303 -3.0630 5.8732 14 1 2.5816 -4.0763 5.1964 15 1 4.6362 -3.7233 6.4346 16 1 2.6598 -2.4243 6.9703 17 6 5.6745 -1.0716 2.3995 18 6 6.2968 -2.1581 1.5609 19 6 6.5069 -3.4132 2.1009 20 6 7.0735 -4.4112 1.3301 21 6 7.4394 -4.1512 0.0227 22 6 7.2341 -2.8946 -0.5156 23 6 6.6627 -1.8981 0.2535 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6963 -1.6480 -1.2226 28 1 1.7504 -0.1990 -2.0371 29 1 1.7517 -1.7714 1.2057 30 1 1.6053 -0.2616 2.1370 31 1 5.0034 -0.6976 5.9431 32 1 5.9836 -0.0977 2.0200 33 1 6.0010 -1.1789 3.4338 34 1 6.2247 -3.6152 3.1236 35 1 7.2341 -5.3928 1.7509 36 1 7.8860 -4.9296 -0.5780 37 1 7.5204 -2.6914 -1.5369 38 1 6.5023 -0.9164 -0.1672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038101684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:54 Heat of formation + Delta-G solvation = -12.733720 kcal Electronic energy + Delta-G solvation = -20124.881376 eV Core-core repulsion = 17159.967140 eV Total energy + Delta-G solvation = -2964.914236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.98973 -37.96648 -35.74228 -34.43995 -31.79944 -30.77412 -30.17715 -28.91248 -27.44255 -25.55956 -24.18270 -21.81550 -21.01680 -20.09140 -18.89564 -16.97850 -16.20586 -15.70099 -15.53866 -14.71102 -14.46065 -14.32069 -14.13173 -13.98308 -13.26269 -12.96894 -12.72291 -12.66119 -12.33272 -12.00927 -11.89383 -11.42675 -11.26919 -11.23670 -10.99498 -10.84425 -10.53774 -10.43958 -10.32691 -10.21638 -9.99294 -9.09002 -8.36125 -8.22375 -8.10164 -7.89037 -7.42965 -6.35643 -4.02491 2.04671 2.10578 3.09820 3.21565 3.24776 4.06600 4.16525 4.43884 4.93199 5.01792 5.06835 5.41163 5.50765 5.55883 5.57335 5.67074 5.71332 5.97561 6.04951 6.13081 6.20508 6.22110 6.28806 6.46293 6.55242 6.67225 6.72721 6.75651 6.90771 7.13002 7.16864 7.25921 7.46172 7.56914 7.69777 7.73244 7.92874 8.02681 8.42735 9.14087 9.65300 10.09736 10.67133 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.010108 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.396689 B = 2769.519367 C = 4518.354808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.104 3.896 3 H 0.082 0.918 4 N -0.823 5.823 5 C -0.112 4.112 6 C 0.484 3.516 7 O -0.577 6.577 8 N -0.445 5.445 9 C -0.330 4.330 10 H 0.085 0.915 11 C 0.042 3.958 12 N -0.860 5.860 13 Si 0.906 3.094 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.282 1.282 17 C 0.153 3.847 18 C -0.078 4.078 19 C -0.100 4.100 20 C -0.134 4.134 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.096 4.096 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.329 0.671 28 H 0.330 0.670 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.268 0.732 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 -3.505 -5.633 6.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.008 4.008 3 H 0.100 0.900 4 N -0.351 5.351 5 C -0.152 4.152 6 C 0.273 3.727 7 O -0.460 6.460 8 N -0.165 5.165 9 C -0.458 4.458 10 H 0.103 0.897 11 C -0.163 4.163 12 N -0.497 5.497 13 Si 0.732 3.268 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.208 1.208 17 C 0.029 3.971 18 C -0.079 4.079 19 C -0.119 4.119 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.115 4.115 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.774 -2.980 -5.566 6.361 hybrid contribution -1.405 -0.952 0.613 1.804 sum -2.178 -3.932 -4.953 6.689 Atomic orbital electron populations 1.22690 0.98733 1.01487 1.01676 1.21195 0.90125 0.99029 0.90477 0.90027 1.58695 1.67624 1.05223 1.03550 1.21432 0.95451 1.01077 0.97289 1.20245 0.89028 0.80118 0.83284 1.90518 1.69939 1.45263 1.40312 1.43373 1.03534 1.48201 1.21360 1.19381 1.13830 1.26600 0.85961 0.89741 1.25316 0.97239 0.96075 0.97703 1.69946 1.35082 1.26838 1.17844 0.86213 0.78716 0.81300 0.80551 1.19230 1.20488 1.20785 1.20284 0.82192 0.94080 1.00510 1.20687 0.96097 0.96252 0.94889 1.21101 0.97888 0.92844 1.00018 1.21019 1.00873 0.98735 0.94610 1.20938 1.02133 0.96762 0.95656 1.21039 1.01002 0.93737 0.99286 1.21250 0.96939 0.99578 0.93718 0.92176 0.93254 0.93019 0.85930 0.85834 0.90886 0.89546 0.92164 0.92287 0.87376 0.86332 0.87107 0.87295 0.87118 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 9.48 37.16 0.35 -2.09 16 2 C 0.10 1.74 2.92 -67.71 -0.20 1.54 16 3 H 0.08 1.51 7.96 -51.93 -0.41 1.10 16 4 N -0.82 -13.39 8.37 -4.67 -0.04 -13.43 16 5 C -0.11 -2.21 4.04 -27.88 -0.11 -2.32 16 6 C 0.48 11.63 7.45 -10.98 -0.08 11.55 16 7 O -0.58 -14.79 14.23 5.55 0.08 -14.71 16 8 N -0.44 -11.05 2.52 -116.09 -0.29 -11.35 16 9 C -0.33 -8.19 8.61 -14.93 -0.13 -8.32 16 10 H 0.08 2.05 7.08 -52.48 -0.37 1.67 16 11 C 0.04 1.04 4.93 -17.47 -0.09 0.95 16 12 N -0.86 -22.30 11.47 55.50 0.64 -21.67 16 13 Si 0.91 19.14 29.60 -169.99 -5.03 14.11 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 C 0.15 3.69 5.01 -5.19 -0.03 3.66 16 18 C -0.08 -1.70 5.41 -104.62 -0.57 -2.27 16 19 C -0.10 -2.02 9.72 -39.58 -0.38 -2.41 16 20 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 21 C -0.14 -2.26 10.05 -39.59 -0.40 -2.66 16 22 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.10 -1.98 9.38 -39.58 -0.37 -2.35 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.33 4.91 9.00 -39.29 -0.35 4.56 16 28 H 0.33 4.56 9.07 -39.29 -0.36 4.20 16 29 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 30 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.06 1.48 7.51 -51.93 -0.39 1.09 16 33 H 0.11 2.75 5.52 -51.93 -0.29 2.46 16 34 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 2.67 7.57 -52.49 -0.40 2.27 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -28.48 319.03 -8.12 -36.60 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -5.48 Total: 15.84 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.80 Total: -10.20 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.30 Total: -46.44 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.08 Total: -14.71 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.48 -8.12 -36.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038101684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.867 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds