Wall clock time and date at job start Mon Mar 30 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46813 * 2 1 4 4 N 1.46893 * 109.47687 * 239.99515 * 2 1 3 5 5 C 1.53007 * 109.46984 * 119.99563 * 2 1 3 6 6 C 1.50701 * 109.46957 * 185.00605 * 5 2 1 7 7 O 1.21288 * 120.00022 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99741 * 180.02562 * 6 5 2 9 9 C 1.37094 * 120.00097 * 359.97438 * 8 6 5 10 10 H 1.08008 * 119.99935 * 37.61360 * 9 8 6 11 11 C 1.38950 * 120.00254 * 217.60705 * 9 8 6 12 12 N 1.31409 * 119.99693 * 20.34729 * 11 9 8 13 13 Si 1.86792 * 120.00515 * 200.34265 * 11 9 8 14 14 H 1.48503 * 109.47071 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47414 * 120.00180 * 13 11 9 16 16 H 1.48499 * 109.47607 * 240.00408 * 13 11 9 17 17 C 1.46507 * 119.99695 * 180.27300 * 8 6 5 18 18 C 1.50701 * 109.46744 * 275.60136 * 17 8 6 19 19 C 1.38235 * 120.00049 * 274.58257 * 18 17 8 20 20 C 1.38238 * 119.99906 * 179.77389 * 19 18 17 21 21 C 1.38233 * 119.99895 * 0.50060 * 20 19 18 22 22 C 1.38233 * 119.99995 * 359.75165 * 21 20 19 23 23 C 1.38233 * 119.99885 * 94.85706 * 18 17 8 24 24 H 1.08990 * 109.47123 * 300.00195 * 1 2 3 25 25 H 1.08997 * 109.46947 * 60.00705 * 1 2 3 26 26 H 1.09005 * 109.46923 * 180.02562 * 1 2 3 27 27 H 1.00901 * 111.00327 * 300.00289 * 4 2 1 28 28 H 1.00900 * 110.99726 * 63.95397 * 4 2 1 29 29 H 1.08994 * 109.47158 * 65.00514 * 5 2 1 30 30 H 1.09000 * 109.47062 * 305.00329 * 5 2 1 31 31 H 0.96999 * 120.00403 * 179.97438 * 12 11 9 32 32 H 1.08992 * 109.47197 * 35.60283 * 17 8 6 33 33 H 1.08996 * 109.46464 * 155.60394 * 17 8 6 34 34 H 1.08001 * 120.00108 * 0.02562 * 19 18 17 35 35 H 1.07998 * 119.99471 * 180.23224 * 20 19 18 36 36 H 1.08000 * 119.99948 * 179.73047 * 21 20 19 37 37 H 1.08000 * 119.99964 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.00340 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1993 5 6 2.0400 -0.7212 1.2494 6 6 3.5419 -0.6147 1.3129 7 8 4.1451 -0.0209 0.4442 8 7 4.2149 -1.1802 2.3346 9 6 3.5332 -1.8519 3.3162 10 1 2.6714 -2.4512 3.0618 11 6 3.9509 -1.7617 4.6383 12 7 4.7121 -0.7609 5.0200 13 14 3.4303 -3.0630 5.8732 14 1 2.5816 -4.0763 5.1964 15 1 4.6362 -3.7233 6.4346 16 1 2.6598 -2.4243 6.9703 17 6 5.6745 -1.0716 2.3995 18 6 6.2968 -2.1581 1.5609 19 6 6.5069 -3.4132 2.1009 20 6 7.0735 -4.4112 1.3301 21 6 7.4394 -4.1512 0.0227 22 6 7.2341 -2.8946 -0.5156 23 6 6.6627 -1.8981 0.2535 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6963 -1.6480 -1.2226 28 1 1.7504 -0.1990 -2.0371 29 1 1.7517 -1.7714 1.2057 30 1 1.6053 -0.2616 2.1370 31 1 5.0034 -0.6976 5.9431 32 1 5.9836 -0.0977 2.0200 33 1 6.0010 -1.1789 3.4338 34 1 6.2247 -3.6152 3.1236 35 1 7.2341 -5.3928 1.7509 36 1 7.8860 -4.9296 -0.5780 37 1 7.5204 -2.6914 -1.5369 38 1 6.5023 -0.9164 -0.1672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038101684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:54 Heat of formation + Delta-G solvation = -29.808530 kcal Electronic energy + Delta-G solvation = -20125.621795 eV Core-core repulsion = 17159.967140 eV Total energy + Delta-G solvation = -2965.654655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71891 -39.55811 -37.23923 -36.24798 -33.63161 -32.47346 -31.65666 -30.32678 -28.79449 -27.36617 -25.96703 -23.30587 -22.50299 -21.57456 -20.73920 -18.72916 -17.83647 -17.24298 -17.18624 -16.45481 -16.13532 -15.88006 -15.67516 -15.58514 -14.81041 -14.54883 -14.17951 -13.85065 -13.79519 -13.62953 -13.36470 -13.08139 -13.04612 -12.74888 -12.59980 -12.51899 -12.23397 -12.04460 -11.86003 -11.74747 -11.62386 -10.98340 -10.19099 -9.70810 -9.52068 -9.36831 -9.30940 -8.25707 -5.99114 0.55476 0.61486 1.41329 1.48060 1.59482 2.22858 2.36291 2.86858 3.14273 3.31688 3.79580 4.08374 4.09285 4.18164 4.24372 4.27538 4.39963 4.45423 4.55256 4.73632 4.74810 4.78854 4.90247 4.93888 5.09001 5.16371 5.20360 5.26963 5.32639 5.36257 5.52858 5.67609 5.69930 5.95523 6.12518 6.25419 6.45524 6.50454 6.79407 7.21409 7.75481 8.20301 8.78162 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.010108 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.396689 B = 2769.519367 C = 4518.354808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 H 0.058 0.942 4 N -0.840 5.840 5 C -0.104 4.104 6 C 0.468 3.532 7 O -0.602 6.602 8 N -0.455 5.455 9 C -0.342 4.342 10 H 0.091 0.909 11 C 0.004 3.996 12 N -0.895 5.895 13 Si 0.972 3.028 14 H -0.258 1.258 15 H -0.278 1.278 16 H -0.281 1.281 17 C 0.160 3.840 18 C -0.101 4.101 19 C -0.117 4.117 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.115 4.115 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.337 0.663 28 H 0.344 0.656 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.270 0.730 32 H 0.031 0.969 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -6.107 -6.557 9.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.002 4.002 3 H 0.076 0.924 4 N -0.370 5.370 5 C -0.145 4.145 6 C 0.258 3.742 7 O -0.487 6.487 8 N -0.175 5.175 9 C -0.469 4.469 10 H 0.108 0.892 11 C -0.199 4.199 12 N -0.532 5.532 13 Si 0.797 3.203 14 H -0.181 1.181 15 H -0.204 1.204 16 H -0.207 1.207 17 C 0.037 3.963 18 C -0.103 4.103 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.134 4.134 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.150 0.850 28 H 0.158 0.842 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.158 0.842 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.377 -5.584 -6.503 8.681 hybrid contribution -1.135 -0.123 0.842 1.419 sum -2.512 -5.707 -5.660 8.422 Atomic orbital electron populations 1.22532 0.95323 1.02599 1.02830 1.21035 0.92619 0.97149 0.89407 0.92403 1.58593 1.68456 1.05971 1.03992 1.21424 0.92220 1.01935 0.98883 1.21051 0.90882 0.79530 0.82747 1.90486 1.70918 1.46187 1.41083 1.43621 1.03835 1.48318 1.21703 1.19626 1.14251 1.26763 0.86300 0.89176 1.26098 0.97069 0.97500 0.99199 1.70055 1.36327 1.28512 1.18342 0.85191 0.78321 0.78803 0.78032 1.18137 1.20371 1.20660 1.20052 0.82610 0.93889 0.99787 1.20487 0.97975 0.96372 0.95422 1.21098 0.99306 0.93063 1.00070 1.21393 0.99025 0.99239 0.94791 1.21419 1.00272 0.97017 0.95440 1.21367 0.99531 0.93469 1.00244 1.21151 0.98743 0.99775 0.93738 0.91866 0.91284 0.91875 0.84993 0.84249 0.90120 0.89833 0.92046 0.95083 0.89214 0.87481 0.83674 0.82845 0.84231 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 9.48 71.98 0.68 -3.51 16 2 C 0.11 3.65 2.92 44.92 0.13 3.78 16 3 H 0.06 2.18 7.96 -2.39 -0.02 2.17 16 4 N -0.84 -26.75 8.37 -168.68 -1.41 -28.17 16 5 C -0.10 -4.15 4.04 29.85 0.12 -4.03 16 6 C 0.47 23.30 7.45 87.66 0.65 23.96 16 7 O -0.60 -32.29 14.23 -3.05 -0.04 -32.33 16 8 N -0.46 -23.55 2.52 -639.59 -1.61 -25.17 16 9 C -0.34 -17.31 8.61 84.04 0.72 -16.59 16 10 H 0.09 4.37 7.08 -2.91 -0.02 4.35 16 11 C 0.00 0.19 4.93 84.93 0.42 0.61 16 12 N -0.89 -47.94 11.47 21.66 0.25 -47.70 16 13 Si 0.97 39.27 29.60 68.60 2.03 41.30 16 14 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 15 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 16 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 17 C 0.16 8.24 5.01 85.63 0.43 8.67 16 18 C -0.10 -4.58 5.41 -19.87 -0.11 -4.68 16 19 C -0.12 -4.71 9.72 22.27 0.22 -4.49 16 20 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 21 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 22 C -0.13 -4.27 10.05 22.27 0.22 -4.04 16 23 C -0.12 -4.83 9.38 22.27 0.21 -4.62 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.34 9.65 9.00 -89.69 -0.81 8.84 16 28 H 0.34 9.14 9.07 -89.69 -0.81 8.32 16 29 H 0.08 3.05 7.66 -2.39 -0.02 3.03 16 30 H 0.08 3.33 8.10 -2.39 -0.02 3.31 16 31 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.03 1.69 7.51 -2.39 -0.02 1.67 16 33 H 0.09 4.88 5.52 -2.39 -0.01 4.86 16 34 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 38 H 0.10 4.64 7.57 -2.91 -0.02 4.62 16 Total: -1.00 -63.89 319.03 2.81 -61.09 By element: Atomic # 1 Polarization: 43.70 SS G_CDS: -0.55 Total: 43.15 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 4.15 Total: -12.17 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -2.78 Total: -101.03 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.04 Total: -32.33 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -63.89 2.81 -61.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038101684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.278 kcal (2) G-P(sol) polarization free energy of solvation -63.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds