Wall clock time and date at job start Mon Mar 30 2020 04:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47242 * 2 1 4 4 C 1.46500 * 120.00256 * 264.44723 * 3 2 1 5 5 C 1.50705 * 109.47278 * 89.99634 * 4 3 2 6 6 H 1.07997 * 119.99341 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99837 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00393 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99582 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47534 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46873 * 120.00294 * 9 7 5 12 12 H 1.48495 * 109.47246 * 239.99743 * 9 7 5 13 13 C 1.34776 * 120.00213 * 84.44293 * 3 2 1 14 14 O 1.21549 * 120.00377 * 185.85373 * 13 3 2 15 15 C 1.47867 * 119.99931 * 5.85798 * 13 3 2 16 16 C 1.39617 * 120.10791 * 55.19389 * 15 13 3 17 17 C 1.37982 * 120.00328 * 179.97438 * 16 15 13 18 18 C 1.38246 * 120.22682 * 0.02562 * 17 16 15 19 19 C 1.38985 * 120.22219 * 359.97438 * 18 17 16 20 20 N 1.39706 * 120.00470 * 180.02562 * 19 18 17 21 21 C 1.38678 * 119.98709 * 359.76480 * 19 18 17 22 22 C 1.50702 * 120.10974 * 180.25300 * 21 19 18 23 23 H 1.08993 * 109.47457 * 300.00580 * 1 2 3 24 24 H 1.09007 * 109.46894 * 60.00479 * 1 2 3 25 25 H 1.08998 * 109.47294 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46402 * 119.99438 * 2 1 3 27 27 H 1.08993 * 109.47457 * 239.99420 * 2 1 3 28 28 H 1.08998 * 109.47295 * 210.00183 * 4 3 2 29 29 H 1.09002 * 109.46895 * 330.00237 * 4 3 2 30 30 H 0.96999 * 120.00038 * 180.02562 * 8 7 5 31 31 H 1.08004 * 119.99667 * 359.97438 * 16 15 13 32 32 H 1.08000 * 119.88210 * 180.02562 * 17 16 15 33 33 H 1.07997 * 119.88846 * 179.97438 * 18 17 16 34 34 H 0.97008 * 119.99915 * 359.97438 * 20 19 18 35 35 H 0.96995 * 119.99773 * 180.02562 * 20 19 18 36 36 H 1.09008 * 109.46858 * 265.82296 * 22 21 19 37 37 H 1.09000 * 109.47225 * 25.81995 * 22 21 19 38 38 H 1.08998 * 109.47001 * 145.82579 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3783 2.0309 -1.2627 5 6 1.1684 2.7250 -1.8333 6 1 0.2258 2.6864 -1.3076 7 6 1.2650 3.4093 -3.0263 8 7 2.4127 3.4559 -3.6667 9 14 -0.2349 4.2691 -3.7338 10 1 -1.3944 4.0672 -2.8283 11 1 0.0432 5.7220 -3.8647 12 1 -0.5457 3.7024 -5.0707 13 6 2.1364 2.0542 1.1617 14 8 2.4390 3.2314 1.1541 15 6 1.8979 1.3605 2.4456 16 6 2.6106 0.2014 2.7583 17 6 2.3867 -0.4439 3.9572 18 6 1.4574 0.0529 4.8521 19 6 0.7427 1.2061 4.5504 20 7 -0.1949 1.7045 5.4582 21 6 0.9644 1.8649 3.3504 22 6 0.1951 3.1187 3.0229 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5138 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.1660 2.7625 -1.0833 29 1 2.7333 1.2805 -1.9691 30 1 2.4807 3.9377 -4.5059 31 1 3.3372 -0.1902 2.0617 32 1 2.9394 -1.3402 4.1973 33 1 1.2863 -0.4568 5.7887 34 1 -0.3474 1.2454 6.2991 35 1 -0.6939 2.5091 5.2474 36 1 -0.6851 2.8614 2.4336 37 1 -0.1161 3.6059 3.9470 38 1 0.8299 3.7956 2.4512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040332465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:36 Heat of formation + Delta-G solvation = -11.240739 kcal Electronic energy + Delta-G solvation = -20132.961655 eV Core-core repulsion = 17168.112160 eV Total energy + Delta-G solvation = -2964.849496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04245 -38.16551 -35.27786 -34.47312 -32.71681 -32.15383 -29.91715 -29.17753 -27.15014 -26.46320 -23.88538 -22.71093 -21.91963 -21.04302 -18.79069 -17.18534 -16.77249 -16.45577 -15.81089 -15.34919 -14.97924 -14.48804 -14.25985 -13.69018 -13.51139 -13.25215 -13.06851 -12.86248 -12.24834 -12.15308 -12.12300 -11.88983 -11.51185 -11.26059 -11.16535 -11.01060 -10.85862 -10.67887 -10.58884 -10.28881 -9.98267 -9.52221 -8.87248 -8.49756 -8.39080 -7.62640 -7.39083 -6.00160 -4.03594 1.35605 1.69848 3.31932 3.38472 3.40940 3.45891 3.78337 3.98416 4.17967 4.48312 4.97271 5.01583 5.19873 5.28139 5.35015 5.55579 5.59815 5.79419 5.80971 5.88875 5.91964 5.97419 6.01946 6.23868 6.36447 6.42908 6.49748 6.63112 6.76626 6.81816 6.92436 7.14525 7.46812 7.49420 7.61728 7.73635 7.96715 8.28401 8.46698 8.94769 9.12817 9.60889 11.08134 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027071 B = 0.005822 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.068767 B = 4808.348488 C = 5154.186789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.589 5.589 4 C 0.245 3.755 5 C -0.518 4.518 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.550 3.450 14 O -0.533 6.533 15 C -0.063 4.063 16 C -0.147 4.147 17 C -0.084 4.084 18 C -0.189 4.189 19 C 0.208 3.792 20 N -0.880 5.880 21 C -0.116 4.116 22 C -0.121 4.121 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.395 0.605 35 H 0.398 0.602 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 -9.133 15.748 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.320 5.320 4 C 0.126 3.874 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.336 3.664 14 O -0.411 6.411 15 C -0.067 4.067 16 C -0.168 4.168 17 C -0.102 4.102 18 C -0.212 4.212 19 C 0.105 3.895 20 N -0.421 5.421 21 C -0.121 4.121 22 C -0.178 4.178 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.222 0.778 35 H 0.228 0.772 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.698 -8.444 15.495 18.030 hybrid contribution -1.114 0.506 -0.232 1.245 sum -4.812 -7.939 15.263 17.864 Atomic orbital electron populations 1.22174 0.96506 1.00814 1.02928 1.21605 0.94587 0.83746 1.02197 1.48208 1.62694 1.13218 1.07847 1.19336 0.96727 0.93140 0.78181 1.21468 0.96288 1.32332 1.05593 0.92273 1.24929 0.96096 0.96281 0.96879 1.69940 1.24143 1.42849 1.16641 0.86480 0.82964 0.79492 0.78712 1.19848 1.20944 1.21044 1.18187 0.78351 0.86408 0.83469 1.90730 1.48296 1.15024 1.87006 1.19851 0.96626 0.95210 0.95045 1.20957 1.02065 0.95677 0.98053 1.20714 0.97048 0.99167 0.93313 1.20564 1.01425 0.97834 1.01350 1.17444 0.90145 0.92662 0.89300 1.42506 1.45498 1.32885 1.21231 1.19316 1.00490 0.98857 0.93437 1.20818 1.00325 0.95276 1.01387 0.93323 0.91040 0.92899 0.90968 0.90671 0.93981 0.94896 0.92861 0.85783 0.85986 0.86453 0.77754 0.77249 0.91647 0.92670 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.20 37.16 0.38 -2.38 16 2 C 0.10 1.77 5.94 -4.05 -0.02 1.75 16 3 N -0.59 -12.87 2.47 -176.17 -0.43 -13.31 16 4 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 5 C -0.52 -14.69 9.21 -34.44 -0.32 -15.01 16 6 H 0.06 1.69 7.42 -52.49 -0.39 1.30 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 9 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 C 0.55 12.11 6.48 -12.32 -0.08 12.03 16 14 O -0.53 -13.87 14.80 5.32 0.08 -13.79 16 15 C -0.06 -1.12 4.83 -104.99 -0.51 -1.63 16 16 C -0.15 -2.16 7.61 -39.16 -0.30 -2.46 16 17 C -0.08 -1.01 10.02 -39.67 -0.40 -1.41 16 18 C -0.19 -2.22 9.89 -39.30 -0.39 -2.61 16 19 C 0.21 2.72 6.73 -83.83 -0.56 2.15 16 20 N -0.88 -8.44 8.99 32.39 0.29 -8.15 16 21 C -0.12 -1.86 5.93 -104.01 -0.62 -2.48 16 22 C -0.12 -1.94 9.20 36.01 0.33 -1.61 16 23 H 0.05 0.82 8.02 -51.93 -0.42 0.41 16 24 H 0.07 1.36 7.57 -51.93 -0.39 0.97 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.07 4.57 -51.93 -0.24 0.84 16 27 H 0.07 1.25 7.83 -51.93 -0.41 0.84 16 28 H 0.04 1.25 7.51 -51.93 -0.39 0.86 16 29 H 0.03 0.87 7.86 -51.93 -0.41 0.47 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.12 1.71 7.39 -52.48 -0.39 1.33 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.39 2.76 8.84 -40.82 -0.36 2.40 16 35 H 0.40 3.53 6.73 -40.82 -0.27 3.26 16 36 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.05 0.70 6.34 -51.93 -0.33 0.37 16 38 H 0.09 1.84 5.90 -51.93 -0.31 1.53 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -33.20 313.73 -7.35 -40.56 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.13 Total: 4.57 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -2.61 Total: -5.60 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.59 Total: -47.49 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.20 -7.35 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040332465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.318 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds