Wall clock time and date at job start Mon Mar 30 2020 04:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47242 * 2 1 4 4 C 1.46500 * 120.00256 * 264.44723 * 3 2 1 5 5 C 1.50705 * 109.47278 * 89.99634 * 4 3 2 6 6 H 1.07997 * 119.99341 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99837 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00393 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99582 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47534 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46873 * 120.00294 * 9 7 5 12 12 H 1.48495 * 109.47246 * 239.99743 * 9 7 5 13 13 C 1.34776 * 120.00213 * 84.44293 * 3 2 1 14 14 O 1.21549 * 120.00377 * 185.85373 * 13 3 2 15 15 C 1.47867 * 119.99931 * 5.85798 * 13 3 2 16 16 C 1.39617 * 120.10791 * 55.19389 * 15 13 3 17 17 C 1.37982 * 120.00328 * 179.97438 * 16 15 13 18 18 C 1.38246 * 120.22682 * 0.02562 * 17 16 15 19 19 C 1.38985 * 120.22219 * 359.97438 * 18 17 16 20 20 N 1.39706 * 120.00470 * 180.02562 * 19 18 17 21 21 C 1.38678 * 119.98709 * 359.76480 * 19 18 17 22 22 C 1.50702 * 120.10974 * 180.25300 * 21 19 18 23 23 H 1.08993 * 109.47457 * 300.00580 * 1 2 3 24 24 H 1.09007 * 109.46894 * 60.00479 * 1 2 3 25 25 H 1.08998 * 109.47294 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46402 * 119.99438 * 2 1 3 27 27 H 1.08993 * 109.47457 * 239.99420 * 2 1 3 28 28 H 1.08998 * 109.47295 * 210.00183 * 4 3 2 29 29 H 1.09002 * 109.46895 * 330.00237 * 4 3 2 30 30 H 0.96999 * 120.00038 * 180.02562 * 8 7 5 31 31 H 1.08004 * 119.99667 * 359.97438 * 16 15 13 32 32 H 1.08000 * 119.88210 * 180.02562 * 17 16 15 33 33 H 1.07997 * 119.88846 * 179.97438 * 18 17 16 34 34 H 0.97008 * 119.99915 * 359.97438 * 20 19 18 35 35 H 0.96995 * 119.99773 * 180.02562 * 20 19 18 36 36 H 1.09008 * 109.46858 * 265.82296 * 22 21 19 37 37 H 1.09000 * 109.47225 * 25.81995 * 22 21 19 38 38 H 1.08998 * 109.47001 * 145.82579 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3783 2.0309 -1.2627 5 6 1.1684 2.7250 -1.8333 6 1 0.2258 2.6864 -1.3076 7 6 1.2650 3.4093 -3.0263 8 7 2.4127 3.4559 -3.6667 9 14 -0.2349 4.2691 -3.7338 10 1 -1.3944 4.0672 -2.8283 11 1 0.0432 5.7220 -3.8647 12 1 -0.5457 3.7024 -5.0707 13 6 2.1364 2.0542 1.1617 14 8 2.4390 3.2314 1.1541 15 6 1.8979 1.3605 2.4456 16 6 2.6106 0.2014 2.7583 17 6 2.3867 -0.4439 3.9572 18 6 1.4574 0.0529 4.8521 19 6 0.7427 1.2061 4.5504 20 7 -0.1949 1.7045 5.4582 21 6 0.9644 1.8649 3.3504 22 6 0.1951 3.1187 3.0229 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5138 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.1660 2.7625 -1.0833 29 1 2.7333 1.2805 -1.9691 30 1 2.4807 3.9377 -4.5059 31 1 3.3372 -0.1902 2.0617 32 1 2.9394 -1.3402 4.1973 33 1 1.2863 -0.4568 5.7887 34 1 -0.3474 1.2454 6.2991 35 1 -0.6939 2.5091 5.2474 36 1 -0.6851 2.8614 2.4336 37 1 -0.1161 3.6059 3.9470 38 1 0.8299 3.7956 2.4512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040332465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:36 Heat of formation + Delta-G solvation = -33.648293 kcal Electronic energy + Delta-G solvation = -20133.933320 eV Core-core repulsion = 17168.112160 eV Total energy + Delta-G solvation = -2965.821160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.40999 -39.56462 -37.02273 -35.54589 -34.76035 -33.35957 -31.56666 -30.40391 -28.87450 -27.74445 -25.53888 -24.39882 -23.33482 -22.13867 -20.25353 -18.70918 -18.31842 -17.94437 -17.35221 -16.78272 -16.30464 -16.03533 -15.86709 -14.95879 -14.88795 -14.62419 -14.48633 -14.17216 -14.09617 -13.82268 -13.41165 -13.21164 -13.11904 -12.97876 -12.75904 -12.58318 -12.44088 -12.21494 -12.10290 -11.82261 -11.64146 -11.38179 -10.63494 -10.57456 -9.65677 -9.43781 -8.35970 -8.21246 -6.34491 0.20613 0.65632 1.34384 1.36818 1.48491 1.84149 2.31258 2.43534 2.93222 3.05824 3.08185 3.66372 3.96951 4.10753 4.18054 4.23402 4.45514 4.57928 4.61736 4.66906 4.71668 4.81215 4.82472 4.94814 4.99556 5.04949 5.20220 5.27642 5.35781 5.43515 5.58647 5.60782 5.65013 5.85959 5.96168 6.07690 6.59603 6.70313 6.77348 7.05053 7.27814 7.44722 8.86128 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027071 B = 0.005822 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.068767 B = 4808.348488 C = 5154.186789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.097 3.903 3 N -0.594 5.594 4 C 0.260 3.740 5 C -0.531 4.531 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.544 3.456 14 O -0.589 6.589 15 C -0.087 4.087 16 C -0.158 4.158 17 C -0.069 4.069 18 C -0.178 4.178 19 C 0.214 3.786 20 N -0.866 5.866 21 C -0.142 4.142 22 C -0.116 4.116 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.080 0.920 28 H -0.003 1.003 29 H 0.027 0.973 30 H 0.266 0.734 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.411 0.589 35 H 0.401 0.599 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 -11.495 18.243 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.323 5.323 4 C 0.139 3.861 5 C -0.569 4.569 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.333 3.667 14 O -0.471 6.471 15 C -0.091 4.091 16 C -0.179 4.179 17 C -0.087 4.087 18 C -0.201 4.201 19 C 0.108 3.892 20 N -0.408 5.408 21 C -0.148 4.148 22 C -0.173 4.173 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.110 0.890 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.015 0.985 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.179 0.821 33 H 0.174 0.826 34 H 0.242 0.758 35 H 0.232 0.768 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.261 -10.854 18.028 21.691 hybrid contribution -0.615 1.194 -0.886 1.609 sum -5.877 -9.659 17.142 20.535 Atomic orbital electron populations 1.22081 0.95715 1.02704 1.01003 1.21915 0.95201 0.81320 1.04011 1.48208 1.62742 1.14922 1.06455 1.18827 0.94991 0.92143 0.80173 1.21659 0.96395 1.32949 1.05932 0.93104 1.25817 0.99236 0.96845 0.97216 1.70052 1.26178 1.43557 1.17137 0.85417 0.79144 0.78116 0.78437 1.19383 1.20733 1.19292 1.19008 0.76754 0.85929 0.84976 1.90679 1.50676 1.17740 1.88034 1.19540 0.99457 0.96929 0.93158 1.21059 1.02064 0.94995 0.99752 1.21117 0.96458 0.99566 0.91597 1.21043 0.99839 0.96745 1.02432 1.17507 0.90521 0.92770 0.88398 1.42476 1.44239 1.32848 1.21200 1.19344 1.01220 0.99327 0.94884 1.20698 0.99220 0.95255 1.02100 0.93959 0.94162 0.88977 0.87774 0.90124 0.98514 0.95496 0.92459 0.85485 0.82128 0.82581 0.75779 0.76829 0.92362 0.89577 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 10.20 71.98 0.73 -4.39 16 2 C 0.10 3.36 5.94 86.38 0.51 3.87 16 3 N -0.59 -27.27 2.47 -829.56 -2.05 -29.31 16 4 C 0.26 14.62 5.16 85.63 0.44 15.06 16 5 C -0.53 -31.58 9.21 25.60 0.24 -31.35 16 6 H 0.05 3.04 7.42 -2.91 -0.02 3.02 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 9 Si 0.96 46.23 29.54 68.60 2.03 48.25 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.54 25.38 6.48 86.79 0.56 25.94 16 14 O -0.59 -33.28 14.80 -3.87 -0.06 -33.34 16 15 C -0.09 -3.10 4.83 -20.10 -0.10 -3.20 16 16 C -0.16 -4.35 7.61 22.54 0.17 -4.17 16 17 C -0.07 -1.35 10.02 22.21 0.22 -1.13 16 18 C -0.18 -3.28 9.89 22.45 0.22 -3.06 16 19 C 0.21 4.89 6.73 38.17 0.26 5.15 16 20 N -0.87 -13.41 8.99 -51.45 -0.46 -13.87 16 21 C -0.14 -4.49 5.93 -19.47 -0.12 -4.61 16 22 C -0.12 -3.82 9.20 71.24 0.66 -3.17 16 23 H 0.04 1.42 8.02 -2.39 -0.02 1.40 16 24 H 0.04 1.55 7.57 -2.38 -0.02 1.53 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.10 2.94 4.57 -2.39 -0.01 2.93 16 27 H 0.08 2.66 7.83 -2.39 -0.02 2.64 16 28 H 0.00 -0.21 7.51 -2.39 -0.02 -0.23 16 29 H 0.03 1.52 7.86 -2.39 -0.02 1.50 16 30 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.13 3.32 7.39 -2.91 -0.02 3.30 16 32 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.41 3.83 8.84 -92.70 -0.82 3.01 16 35 H 0.40 5.93 6.73 -92.71 -0.62 5.30 16 36 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.09 2.15 6.34 -2.39 -0.02 2.13 16 38 H 0.05 2.08 5.90 -2.39 -0.01 2.07 16 Total: -1.00 -78.09 313.73 3.65 -74.44 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.36 Total: 15.05 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 4.26 Total: -4.15 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -2.22 Total: -100.25 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.06 Total: -33.34 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -78.09 3.65 -74.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040332465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.793 kcal (2) G-P(sol) polarization free energy of solvation -78.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds