Wall clock time and date at job start Mon Mar 30 2020 04:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47065 * 2 1 4 4 C 1.46894 * 111.00149 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46958 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00147 * 354.63743 * 5 4 3 7 7 N 1.34775 * 119.99669 * 174.63583 * 5 4 3 8 8 C 1.46503 * 120.00050 * 184.48934 * 7 5 4 9 9 C 1.50697 * 109.47302 * 270.00610 * 8 7 5 10 10 H 1.08001 * 120.00182 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99972 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99999 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00154 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46820 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47019 * 119.99607 * 13 11 9 16 16 H 1.48497 * 109.47519 * 240.00002 * 13 11 9 17 17 C 1.39926 * 120.00446 * 4.49391 * 7 5 4 18 18 C 1.38867 * 120.07031 * 66.94890 * 17 7 5 19 19 C 1.38119 * 119.93082 * 179.97438 * 18 17 7 20 20 C 1.38279 * 120.06462 * 359.97438 * 19 18 17 21 21 C 1.38280 * 120.14815 * 0.04978 * 20 19 18 22 22 C 1.38110 * 120.06701 * 359.94925 * 21 20 19 23 23 H 1.09003 * 109.47383 * 300.00207 * 1 2 3 24 24 H 1.08999 * 109.47482 * 60.00514 * 1 2 3 25 25 H 1.09003 * 109.46967 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47383 * 239.99793 * 2 1 3 27 27 H 1.08999 * 109.47482 * 119.99486 * 2 1 3 28 28 H 1.00902 * 110.99480 * 303.95661 * 3 2 1 29 29 H 1.08998 * 109.47315 * 59.99647 * 4 3 2 30 30 H 1.08998 * 109.46952 * 299.99243 * 4 3 2 31 31 H 1.09001 * 109.46488 * 30.00129 * 8 7 5 32 32 H 1.09002 * 109.47413 * 149.99617 * 8 7 5 33 33 H 0.97001 * 119.99848 * 180.02562 * 12 11 9 34 34 H 1.08006 * 120.03758 * 359.70795 * 18 17 7 35 35 H 1.08000 * 119.96312 * 179.97438 * 19 18 17 36 36 H 1.08004 * 119.92218 * 180.02562 * 20 19 18 37 37 H 1.07996 * 119.96726 * 179.97438 * 21 20 19 38 38 H 1.08005 * 120.03750 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 6 3.9522 2.8581 -0.0012 6 8 3.1441 3.7571 -0.0993 7 7 5.2654 3.1412 0.1073 8 6 5.7088 4.5341 0.2057 9 6 5.9630 5.0792 -1.1760 10 1 5.8102 4.4509 -2.0410 11 6 6.3909 6.3801 -1.3358 12 7 6.5766 7.1454 -0.2825 13 14 6.7068 7.0557 -3.0485 14 1 6.4249 6.0018 -4.0560 15 1 5.8204 8.2221 -3.2918 16 1 8.1254 7.4804 -3.1593 17 6 6.2055 2.1049 0.1258 18 6 6.4057 1.3268 -1.0069 19 6 7.3348 0.3050 -0.9856 20 6 8.0654 0.0569 0.1619 21 6 7.8681 0.8295 1.2916 22 6 6.9406 1.8528 1.2767 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6440 1.9012 -0.7814 29 1 3.8646 0.9204 -0.8908 30 1 3.8653 0.9203 0.8892 31 1 4.9358 5.1276 0.6939 32 1 6.6275 4.5826 0.7903 33 1 6.8772 8.0608 -0.3950 34 1 5.8325 1.5177 -1.9022 35 1 7.4906 -0.3007 -1.8660 36 1 8.7916 -0.7425 0.1759 37 1 8.4401 0.6329 2.1863 38 1 6.7872 2.4562 2.1592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044288601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:19 Heat of formation + Delta-G solvation = -4.896908 kcal Electronic energy + Delta-G solvation = -19632.988947 eV Core-core repulsion = 16668.414540 eV Total energy + Delta-G solvation = -2964.574406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.91552 -38.17418 -36.06096 -34.74626 -32.70480 -30.92599 -30.58513 -29.37487 -27.55511 -25.42299 -22.86410 -22.43735 -22.06950 -21.81988 -19.01100 -17.17102 -16.52936 -16.08387 -15.89559 -15.60639 -14.89655 -14.59780 -14.34207 -14.20716 -13.88409 -13.45065 -13.16448 -12.82676 -12.44392 -12.31205 -12.08221 -11.89486 -11.57808 -11.45409 -11.20288 -11.19332 -10.97757 -10.83202 -10.65408 -10.17862 -9.71919 -9.29172 -8.72243 -8.60468 -8.44569 -8.30618 -7.65196 -6.06108 -4.10350 1.55315 1.62867 3.29252 3.29774 3.36813 3.40706 3.64447 4.01422 4.38536 4.45141 4.95692 5.10510 5.15104 5.15723 5.19409 5.29187 5.34161 5.42539 5.52357 5.61776 5.67159 5.73301 5.80328 5.93132 6.02920 6.12540 6.24281 6.58131 6.71269 6.79157 6.88426 7.05956 7.18894 7.36050 7.45288 7.49498 7.89451 8.18487 8.35350 8.85532 9.00135 9.54063 11.02348 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.006993 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.480260 B = 4003.205053 C = 5343.668892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 N -0.676 5.676 4 C 0.042 3.958 5 C 0.512 3.488 6 O -0.514 6.514 7 N -0.564 5.564 8 C 0.249 3.751 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.899 3.101 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.165 3.835 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.109 4.109 22 C -0.125 4.125 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.351 0.649 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -17.083 1.211 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 N -0.309 5.309 4 C -0.091 4.091 5 C 0.299 3.701 6 O -0.388 6.388 7 N -0.293 5.293 8 C 0.131 3.869 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.727 3.273 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.209 1.209 17 C 0.073 3.927 18 C -0.146 4.146 19 C -0.129 4.129 20 C -0.154 4.154 21 C -0.128 4.128 22 C -0.145 4.145 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.171 0.829 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.198 -16.273 1.897 16.530 hybrid contribution 0.647 0.262 -1.881 2.007 sum -1.551 -16.011 0.016 16.086 Atomic orbital electron populations 1.21754 0.94859 1.01417 1.02698 1.21926 0.95807 0.89381 1.00309 1.60179 1.06221 1.12980 1.51533 1.21877 0.89437 0.95372 1.02377 1.20275 0.82142 0.90518 0.77143 1.90687 1.52495 1.48113 1.47509 1.45986 1.04005 1.08022 1.71262 1.19424 0.95866 0.73706 0.97890 1.21387 1.45076 0.97328 0.92421 0.92435 1.24912 0.95342 0.96582 0.97180 1.69938 1.46530 1.07980 1.28881 0.86427 0.77735 0.79000 0.84181 1.19843 1.20813 1.20922 1.17750 0.92531 0.89526 0.92879 1.21350 0.99363 0.96651 0.97230 1.20960 0.96235 0.97619 0.98075 1.21050 1.00362 1.00403 0.93568 1.20970 0.97862 0.95524 0.98394 1.21333 0.97429 0.98062 0.97654 0.91676 0.92737 0.92320 0.95528 0.91113 0.82924 0.92616 0.88782 0.93484 0.94702 0.92718 0.86125 0.86206 0.86407 0.86079 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.17 37.16 0.38 -1.10 16 2 C 0.06 0.63 6.40 -3.82 -0.02 0.60 16 3 N -0.68 -10.21 6.17 -115.06 -0.71 -10.92 16 4 C 0.04 0.67 4.84 -4.98 -0.02 0.64 16 5 C 0.51 10.89 7.59 -10.98 -0.08 10.81 16 6 O -0.51 -13.00 15.78 5.56 0.09 -12.91 16 7 N -0.56 -12.29 2.51 -114.73 -0.29 -12.58 16 8 C 0.25 6.60 5.07 -5.19 -0.03 6.57 16 9 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 10 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 13 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.17 3.01 4.42 -83.69 -0.37 2.64 16 18 C -0.13 -2.03 8.46 -39.39 -0.33 -2.36 16 19 C -0.11 -1.45 10.04 -39.61 -0.40 -1.84 16 20 C -0.14 -1.65 10.04 -39.55 -0.40 -2.05 16 21 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 16 22 C -0.13 -2.01 9.65 -39.39 -0.38 -2.39 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.35 5.50 8.35 -39.29 -0.33 5.17 16 29 H 0.06 0.81 7.00 -51.93 -0.36 0.45 16 30 H 0.09 1.40 8.02 -51.93 -0.42 0.98 16 31 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 32 H 0.04 0.94 7.83 -51.93 -0.41 0.54 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.12 1.95 7.91 -52.48 -0.42 1.53 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -32.57 325.83 -8.43 -41.00 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.67 Total: 3.36 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.48 Total: -3.95 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.26 Total: -49.50 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.57 -8.43 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044288601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.102 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds