Wall clock time and date at job start Mon Mar 30 2020 04:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47065 * 2 1 4 4 C 1.46894 * 111.00149 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46958 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00147 * 354.63743 * 5 4 3 7 7 N 1.34775 * 119.99669 * 174.63583 * 5 4 3 8 8 C 1.46503 * 120.00050 * 184.48934 * 7 5 4 9 9 C 1.50697 * 109.47302 * 270.00610 * 8 7 5 10 10 H 1.08001 * 120.00182 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99972 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99999 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00154 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46820 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47019 * 119.99607 * 13 11 9 16 16 H 1.48497 * 109.47519 * 240.00002 * 13 11 9 17 17 C 1.39926 * 120.00446 * 4.49391 * 7 5 4 18 18 C 1.38867 * 120.07031 * 66.94890 * 17 7 5 19 19 C 1.38119 * 119.93082 * 179.97438 * 18 17 7 20 20 C 1.38279 * 120.06462 * 359.97438 * 19 18 17 21 21 C 1.38280 * 120.14815 * 0.04978 * 20 19 18 22 22 C 1.38110 * 120.06701 * 359.94925 * 21 20 19 23 23 H 1.09003 * 109.47383 * 300.00207 * 1 2 3 24 24 H 1.08999 * 109.47482 * 60.00514 * 1 2 3 25 25 H 1.09003 * 109.46967 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47383 * 239.99793 * 2 1 3 27 27 H 1.08999 * 109.47482 * 119.99486 * 2 1 3 28 28 H 1.00902 * 110.99480 * 303.95661 * 3 2 1 29 29 H 1.08998 * 109.47315 * 59.99647 * 4 3 2 30 30 H 1.08998 * 109.46952 * 299.99243 * 4 3 2 31 31 H 1.09001 * 109.46488 * 30.00129 * 8 7 5 32 32 H 1.09002 * 109.47413 * 149.99617 * 8 7 5 33 33 H 0.97001 * 119.99848 * 180.02562 * 12 11 9 34 34 H 1.08006 * 120.03758 * 359.70795 * 18 17 7 35 35 H 1.08000 * 119.96312 * 179.97438 * 19 18 17 36 36 H 1.08004 * 119.92218 * 180.02562 * 20 19 18 37 37 H 1.07996 * 119.96726 * 179.97438 * 21 20 19 38 38 H 1.08005 * 120.03750 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 -0.0006 5 6 3.9522 2.8581 -0.0012 6 8 3.1441 3.7571 -0.0993 7 7 5.2654 3.1412 0.1073 8 6 5.7088 4.5341 0.2057 9 6 5.9630 5.0792 -1.1760 10 1 5.8102 4.4509 -2.0410 11 6 6.3909 6.3801 -1.3358 12 7 6.5766 7.1454 -0.2825 13 14 6.7068 7.0557 -3.0485 14 1 6.4249 6.0018 -4.0560 15 1 5.8204 8.2221 -3.2918 16 1 8.1254 7.4804 -3.1593 17 6 6.2055 2.1049 0.1258 18 6 6.4057 1.3268 -1.0069 19 6 7.3348 0.3050 -0.9856 20 6 8.0654 0.0569 0.1619 21 6 7.8681 0.8295 1.2916 22 6 6.9406 1.8528 1.2767 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6440 1.9012 -0.7814 29 1 3.8646 0.9204 -0.8908 30 1 3.8653 0.9203 0.8892 31 1 4.9358 5.1276 0.6939 32 1 6.6275 4.5826 0.7903 33 1 6.8772 8.0608 -0.3950 34 1 5.8325 1.5177 -1.9022 35 1 7.4906 -0.3007 -1.8660 36 1 8.7916 -0.7425 0.1759 37 1 8.4401 0.6329 2.1863 38 1 6.7872 2.4562 2.1592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044288601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:18 Heat of formation + Delta-G solvation = -26.505976 kcal Electronic energy + Delta-G solvation = -19633.925986 eV Core-core repulsion = 16668.414540 eV Total energy + Delta-G solvation = -2965.511446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.41630 -39.52714 -37.25903 -36.39326 -34.80657 -32.09877 -31.69278 -30.81625 -29.28667 -26.96015 -24.67163 -23.65289 -23.28503 -22.91438 -20.47846 -18.78781 -18.49096 -17.54506 -17.13477 -17.06274 -16.47123 -16.09111 -15.56749 -15.51164 -15.14946 -14.79422 -14.48219 -14.28055 -14.06156 -13.59612 -13.49186 -13.40334 -13.03463 -12.78656 -12.66536 -12.54298 -12.46068 -12.16290 -12.12191 -12.02411 -11.72627 -10.93681 -10.69100 -10.11005 -9.83991 -9.49726 -9.19286 -8.26474 -6.41451 0.36796 0.50804 1.33110 1.35623 1.47276 1.67585 2.08890 2.36773 2.86928 3.03248 3.22460 3.60231 4.04721 4.13158 4.16560 4.22145 4.32103 4.33399 4.43708 4.60729 4.63594 4.66047 4.74648 4.93895 4.98566 5.08239 5.10173 5.15969 5.32358 5.40929 5.54530 5.63227 5.66080 5.76524 5.90910 5.98790 6.08460 6.28100 6.64048 6.72356 7.21398 7.36019 8.81117 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.006993 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.480260 B = 4003.205053 C = 5343.668892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 N -0.694 5.694 4 C 0.064 3.936 5 C 0.502 3.498 6 O -0.569 6.569 7 N -0.565 5.565 8 C 0.266 3.734 9 C -0.540 4.540 10 H 0.051 0.949 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.970 3.030 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.268 1.268 17 C 0.125 3.875 18 C -0.137 4.137 19 C -0.102 4.102 20 C -0.119 4.119 21 C -0.102 4.102 22 C -0.141 4.141 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.345 0.655 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.002 0.998 32 H 0.021 0.979 33 H 0.268 0.732 34 H 0.112 0.888 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 -20.143 0.039 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 N -0.327 5.327 4 C -0.068 4.068 5 C 0.291 3.709 6 O -0.448 6.448 7 N -0.293 5.293 8 C 0.146 3.854 9 C -0.578 4.578 10 H 0.069 0.931 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.794 3.206 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.193 1.193 17 C 0.034 3.966 18 C -0.157 4.157 19 C -0.120 4.120 20 C -0.137 4.137 21 C -0.121 4.121 22 C -0.161 4.161 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.163 0.837 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.020 0.980 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.171 0.829 36 H 0.178 0.822 37 H 0.170 0.830 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.655 -19.398 0.737 19.423 hybrid contribution 0.235 1.121 -1.448 1.846 sum -0.420 -18.277 -0.711 18.296 Atomic orbital electron populations 1.21743 0.93762 1.02802 1.02062 1.22053 0.96700 0.87256 1.01361 1.60220 1.05548 1.15412 1.51556 1.21697 0.90161 0.91201 1.03786 1.21311 0.81448 0.92487 0.75623 1.90640 1.53791 1.50195 1.50146 1.45809 1.05288 1.07191 1.71009 1.18822 0.93538 0.76504 0.96505 1.21609 1.45421 0.97902 0.92875 0.93117 1.25856 0.94823 0.96776 1.01573 1.70056 1.47001 1.08449 1.31224 0.85340 0.78246 0.78188 0.78877 1.19208 1.20416 1.19297 1.18023 0.93656 0.89972 0.94923 1.21374 1.00566 0.97632 0.96092 1.21344 0.94547 0.96406 0.99744 1.21558 0.99703 1.00216 0.92246 1.21338 0.96556 0.93990 1.00180 1.21399 0.98488 0.99450 0.96774 0.92790 0.92942 0.89856 0.94042 0.90249 0.83665 0.90688 0.87355 0.97968 0.96109 0.92278 0.87000 0.82851 0.82215 0.82975 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.17 71.98 0.73 -1.94 16 2 C 0.05 1.15 6.40 86.30 0.55 1.71 16 3 N -0.69 -21.00 6.17 -517.93 -3.19 -24.20 16 4 C 0.06 2.04 4.84 85.56 0.41 2.45 16 5 C 0.50 22.49 7.59 87.66 0.67 23.15 16 6 O -0.57 -30.86 15.78 -3.03 -0.05 -30.91 16 7 N -0.57 -26.02 2.51 -635.30 -1.59 -27.62 16 8 C 0.27 15.12 5.07 85.63 0.43 15.56 16 9 C -0.54 -32.29 9.39 25.60 0.24 -32.05 16 10 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.52 5.46 84.65 0.46 0.98 16 12 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 13 Si 0.97 45.98 29.54 68.60 2.03 48.00 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 C 0.12 4.61 4.42 38.15 0.17 4.78 16 18 C -0.14 -4.24 8.46 22.39 0.19 -4.05 16 19 C -0.10 -2.29 10.04 22.25 0.22 -2.06 16 20 C -0.12 -2.34 10.04 22.29 0.22 -2.11 16 21 C -0.10 -2.36 10.04 22.25 0.22 -2.14 16 22 C -0.14 -4.52 9.65 22.39 0.22 -4.30 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.34 11.10 8.35 -89.69 -0.75 10.35 16 29 H 0.08 2.11 7.00 -2.39 -0.02 2.09 16 30 H 0.11 3.15 8.02 -2.39 -0.02 3.13 16 31 H 0.00 0.14 7.49 -2.39 -0.02 0.13 16 32 H 0.02 1.21 7.83 -2.39 -0.02 1.20 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.11 3.58 7.91 -2.91 -0.02 3.56 16 35 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.11 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.45 325.83 2.51 -72.94 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.29 Total: 18.84 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.75 Total: -0.04 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -4.50 Total: -108.84 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -75.45 2.51 -72.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044288601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.434 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds