Wall clock time and date at job start Mon Mar 30 2020 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47443 * 2 1 4 4 C 1.46496 * 119.99604 * 264.90735 * 3 2 1 5 5 C 1.50702 * 109.46927 * 269.99296 * 4 3 2 6 6 H 1.08006 * 119.99514 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00461 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99710 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00374 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47155 * 89.99823 * 9 7 5 11 11 H 1.48496 * 109.47034 * 209.99956 * 9 7 5 12 12 H 1.48499 * 109.47012 * 329.99726 * 9 7 5 13 13 C 1.34774 * 120.00000 * 84.89536 * 3 2 1 14 14 O 1.21590 * 120.00125 * 185.54650 * 13 3 2 15 15 C 1.47524 * 119.99801 * 5.55937 * 13 3 2 16 16 C 1.39816 * 120.07350 * 55.22742 * 15 13 3 17 17 C 1.37589 * 119.92985 * 180.25451 * 16 15 13 18 18 C 1.39248 * 120.06762 * 359.43064 * 17 16 15 19 19 N 1.39041 * 119.92693 * 180.30002 * 18 17 16 20 20 C 1.39194 * 120.13619 * 0.59448 * 18 17 16 21 21 C 1.37626 * 120.06964 * 359.68090 * 20 18 17 22 22 C 1.50706 * 120.03212 * 179.97438 * 21 20 18 23 23 H 1.08993 * 109.47222 * 59.99909 * 1 2 3 24 24 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47167 * 299.99902 * 1 2 3 26 26 H 1.09005 * 109.46782 * 239.99560 * 2 1 3 27 27 H 1.09000 * 109.46929 * 120.00331 * 2 1 3 28 28 H 1.08997 * 109.48021 * 29.99487 * 4 3 2 29 29 H 1.09005 * 109.47194 * 149.99839 * 4 3 2 30 30 H 0.97001 * 120.00153 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.03262 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.96402 * 179.72339 * 17 16 15 33 33 H 0.97007 * 119.99921 * 180.29246 * 19 18 17 34 34 H 0.96996 * 120.00525 * 0.29342 * 19 18 17 35 35 H 1.07999 * 119.96041 * 179.70404 * 20 18 17 36 36 H 1.09000 * 109.47314 * 274.94464 * 22 21 20 37 37 H 1.08999 * 109.47477 * 34.94545 * 22 21 20 38 38 H 1.08998 * 109.47220 * 154.94582 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3688 2.0341 -1.2637 5 6 3.8232 1.7863 -1.5708 6 1 4.4261 1.2006 -0.8926 7 6 4.3842 2.3073 -2.7175 8 7 3.6500 3.0200 -3.5435 9 14 6.1869 1.9995 -3.0985 10 1 6.3185 0.7545 -3.8972 11 1 6.7317 3.1439 -3.8721 12 1 6.9435 1.8553 -1.8288 13 6 2.1452 2.0511 1.1626 14 8 2.4533 3.2273 1.1560 15 6 1.9103 1.3573 2.4431 16 6 2.6211 0.1930 2.7498 17 6 2.3959 -0.4546 3.9426 18 6 1.4698 0.0549 4.8491 19 7 1.2491 -0.5986 6.0564 20 6 0.7602 1.2135 4.5465 21 6 0.9769 1.8627 3.3525 22 6 0.2077 3.1167 3.0254 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7536 1.6269 -2.0661 29 1 2.1928 3.1066 -1.1796 30 1 4.0445 3.3862 -4.3505 31 1 3.3429 -0.2000 2.0491 32 1 2.9414 -1.3564 4.1781 33 1 0.6011 -0.2469 6.6869 34 1 1.7430 -1.4060 6.2684 35 1 0.0391 1.6035 5.2496 36 1 -0.7527 2.8494 2.5845 37 1 0.0417 3.6896 3.9378 38 1 0.7776 3.7183 2.3173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044748861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:40 Heat of formation + Delta-G solvation = -15.406647 kcal Electronic energy + Delta-G solvation = -19913.808758 eV Core-core repulsion = 16948.778615 eV Total energy + Delta-G solvation = -2965.030143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.96167 -38.13654 -35.23744 -34.64720 -32.74841 -32.13073 -30.00560 -29.14091 -27.26844 -26.37972 -23.41682 -22.99740 -22.03911 -21.13445 -18.65258 -17.08883 -16.62476 -16.42889 -16.30561 -15.50382 -14.67656 -14.43984 -14.04246 -13.83390 -13.58282 -13.15690 -13.01437 -12.88805 -12.50787 -12.23782 -12.21654 -11.88846 -11.56406 -11.52247 -11.16725 -10.86123 -10.84058 -10.63055 -10.52852 -10.13282 -10.05460 -9.56991 -8.81728 -8.59904 -8.39030 -7.60395 -7.38764 -5.99597 -4.04327 1.52065 1.56378 3.32988 3.39550 3.43436 3.51376 3.76628 3.97969 4.17350 4.49728 4.95249 5.03559 5.19220 5.34651 5.40274 5.53433 5.60788 5.66536 5.78900 5.87291 5.89702 6.00325 6.07540 6.18845 6.30744 6.33522 6.41148 6.56478 6.61453 6.85680 6.91492 7.17965 7.43225 7.53319 7.62222 7.64923 7.97891 8.29225 8.53614 8.95576 9.19780 9.60875 11.08293 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026447 B = 0.005367 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.457644 B = 5216.282070 C = 5418.768762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.245 3.755 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.558 3.442 14 O -0.541 6.541 15 C -0.170 4.170 16 C -0.037 4.037 17 C -0.210 4.210 18 C 0.226 3.774 19 N -0.877 5.877 20 C -0.208 4.208 21 C 0.007 3.993 22 C -0.135 4.135 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.396 0.604 34 H 0.397 0.603 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.685 -9.139 15.845 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.322 5.322 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.345 3.655 14 O -0.420 6.420 15 C -0.175 4.175 16 C -0.056 4.056 17 C -0.232 4.232 18 C 0.121 3.879 19 N -0.415 5.415 20 C -0.231 4.231 21 C 0.005 3.995 22 C -0.191 4.191 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.224 0.776 34 H 0.225 0.775 35 H 0.138 0.862 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.504 -8.388 15.578 19.218 hybrid contribution 0.976 -0.512 0.058 1.104 sum -6.528 -8.900 15.636 19.139 Atomic orbital electron populations 1.22176 0.96949 1.01184 1.02094 1.21560 0.93530 0.84368 1.02804 1.48193 1.62815 1.13168 1.08040 1.19287 0.95360 0.94426 0.78357 1.21458 0.95423 1.33185 1.06372 0.92490 1.24926 0.98112 0.94947 0.96078 1.69936 1.36092 1.34881 1.12477 0.86514 0.85018 0.77681 0.78320 1.20671 1.21113 1.19900 1.18059 0.77590 0.86384 0.83432 1.90708 1.48268 1.15840 1.87154 1.19793 1.02236 0.98430 0.97050 1.20975 0.96687 0.92387 0.95548 1.20416 1.03676 1.03344 0.95809 1.17805 0.92903 0.91155 0.86021 1.42334 1.48669 1.31656 1.18870 1.20280 1.05659 0.97968 0.99147 1.19574 0.93360 0.94790 0.91761 1.21065 0.99903 0.95073 1.03049 0.92361 0.92432 0.93004 0.90142 0.91104 0.95035 0.93740 0.92769 0.85354 0.86161 0.77600 0.77547 0.86229 0.91319 0.91664 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.20 37.16 0.38 -2.10 16 2 C 0.10 1.76 5.90 -4.04 -0.02 1.74 16 3 N -0.59 -13.08 2.47 -176.29 -0.43 -13.52 16 4 C 0.24 6.55 5.18 -5.20 -0.03 6.52 16 5 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 9 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.56 12.44 6.42 -12.48 -0.08 12.36 16 14 O -0.54 -14.22 14.69 5.29 0.08 -14.14 16 15 C -0.17 -3.04 4.87 -104.95 -0.51 -3.55 16 16 C -0.04 -0.57 7.59 -39.23 -0.30 -0.87 16 17 C -0.21 -2.65 9.87 -39.44 -0.39 -3.04 16 18 C 0.23 2.66 6.75 -83.86 -0.57 2.09 16 19 N -0.88 -6.86 9.05 32.41 0.29 -6.57 16 20 C -0.21 -2.67 9.54 -39.45 -0.38 -3.05 16 21 C 0.01 0.11 5.91 -104.27 -0.62 -0.51 16 22 C -0.13 -2.02 9.68 36.01 0.35 -1.67 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 26 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 27 H 0.07 1.10 4.54 -51.93 -0.24 0.86 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.34 7.35 -51.93 -0.38 0.96 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.13 1.97 7.38 -52.49 -0.39 1.58 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.40 2.37 8.83 -40.82 -0.36 2.01 16 34 H 0.40 2.37 8.83 -40.82 -0.36 2.01 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.82 8.12 -51.93 -0.42 0.39 16 38 H 0.09 1.73 5.57 -51.93 -0.29 1.45 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -33.77 318.54 -7.48 -41.25 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.35 Total: 3.09 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.58 Total: -5.83 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.60 Total: -46.23 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.08 Total: -14.14 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.77 -7.48 -41.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044748861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.844 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds