Wall clock time and date at job start Mon Mar 30 2020 04:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47443 * 2 1 4 4 C 1.46496 * 119.99604 * 264.90735 * 3 2 1 5 5 C 1.50702 * 109.46927 * 269.99296 * 4 3 2 6 6 H 1.08006 * 119.99514 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00461 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99710 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00374 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47155 * 89.99823 * 9 7 5 11 11 H 1.48496 * 109.47034 * 209.99956 * 9 7 5 12 12 H 1.48499 * 109.47012 * 329.99726 * 9 7 5 13 13 C 1.34774 * 120.00000 * 84.89536 * 3 2 1 14 14 O 1.21590 * 120.00125 * 185.54650 * 13 3 2 15 15 C 1.47524 * 119.99801 * 5.55937 * 13 3 2 16 16 C 1.39816 * 120.07350 * 55.22742 * 15 13 3 17 17 C 1.37589 * 119.92985 * 180.25451 * 16 15 13 18 18 C 1.39248 * 120.06762 * 359.43064 * 17 16 15 19 19 N 1.39041 * 119.92693 * 180.30002 * 18 17 16 20 20 C 1.39194 * 120.13619 * 0.59448 * 18 17 16 21 21 C 1.37626 * 120.06964 * 359.68090 * 20 18 17 22 22 C 1.50706 * 120.03212 * 179.97438 * 21 20 18 23 23 H 1.08993 * 109.47222 * 59.99909 * 1 2 3 24 24 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47167 * 299.99902 * 1 2 3 26 26 H 1.09005 * 109.46782 * 239.99560 * 2 1 3 27 27 H 1.09000 * 109.46929 * 120.00331 * 2 1 3 28 28 H 1.08997 * 109.48021 * 29.99487 * 4 3 2 29 29 H 1.09005 * 109.47194 * 149.99839 * 4 3 2 30 30 H 0.97001 * 120.00153 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.03262 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.96402 * 179.72339 * 17 16 15 33 33 H 0.97007 * 119.99921 * 180.29246 * 19 18 17 34 34 H 0.96996 * 120.00525 * 0.29342 * 19 18 17 35 35 H 1.07999 * 119.96041 * 179.70404 * 20 18 17 36 36 H 1.09000 * 109.47314 * 274.94464 * 22 21 20 37 37 H 1.08999 * 109.47477 * 34.94545 * 22 21 20 38 38 H 1.08998 * 109.47220 * 154.94582 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3688 2.0341 -1.2637 5 6 3.8232 1.7863 -1.5708 6 1 4.4261 1.2006 -0.8926 7 6 4.3842 2.3073 -2.7175 8 7 3.6500 3.0200 -3.5435 9 14 6.1869 1.9995 -3.0985 10 1 6.3185 0.7545 -3.8972 11 1 6.7317 3.1439 -3.8721 12 1 6.9435 1.8553 -1.8288 13 6 2.1452 2.0511 1.1626 14 8 2.4533 3.2273 1.1560 15 6 1.9103 1.3573 2.4431 16 6 2.6211 0.1930 2.7498 17 6 2.3959 -0.4546 3.9426 18 6 1.4698 0.0549 4.8491 19 7 1.2491 -0.5986 6.0564 20 6 0.7602 1.2135 4.5465 21 6 0.9769 1.8627 3.3525 22 6 0.2077 3.1167 3.0254 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7536 1.6269 -2.0661 29 1 2.1928 3.1066 -1.1796 30 1 4.0445 3.3862 -4.3505 31 1 3.3429 -0.2000 2.0491 32 1 2.9414 -1.3564 4.1781 33 1 0.6011 -0.2469 6.6869 34 1 1.7430 -1.4060 6.2684 35 1 0.0391 1.6035 5.2496 36 1 -0.7527 2.8494 2.5845 37 1 0.0417 3.6896 3.9378 38 1 0.7776 3.7183 2.3173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044748861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:39 Heat of formation + Delta-G solvation = -38.383760 kcal Electronic energy + Delta-G solvation = -19914.805120 eV Core-core repulsion = 16948.778615 eV Total energy + Delta-G solvation = -2966.026505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33516 -39.51228 -36.96992 -35.69810 -34.84526 -33.26485 -31.64354 -30.34807 -28.84259 -27.83375 -25.14459 -24.56388 -23.27227 -22.36840 -20.16373 -18.64375 -18.12544 -17.81130 -17.43417 -17.29342 -16.34977 -16.00156 -15.37890 -15.18816 -14.76179 -14.57260 -14.49970 -14.06988 -13.99058 -13.68629 -13.42778 -13.40560 -13.21341 -13.10777 -12.83421 -12.65760 -12.50358 -12.17595 -11.98168 -11.81348 -11.70686 -11.24565 -10.63494 -10.54466 -9.68960 -9.40324 -8.39114 -8.20607 -6.37052 0.35958 0.50401 1.36396 1.39921 1.50372 1.94337 2.33135 2.49107 2.90938 3.02815 3.07480 3.79076 3.90836 4.02181 4.18598 4.35074 4.42558 4.55402 4.62452 4.65562 4.74244 4.85602 4.93335 4.97322 4.99969 5.04068 5.21111 5.22850 5.34272 5.36498 5.47414 5.59281 5.74161 5.87319 5.90268 6.07480 6.60305 6.70588 6.82411 7.04485 7.28435 7.50717 8.85676 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026447 B = 0.005367 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.457644 B = 5216.282070 C = 5418.768762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -0.597 5.597 4 C 0.261 3.739 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.553 3.447 14 O -0.598 6.598 15 C -0.204 4.204 16 C -0.043 4.043 17 C -0.205 4.205 18 C 0.243 3.757 19 N -0.855 5.855 20 C -0.206 4.206 21 C -0.003 4.003 22 C -0.132 4.132 23 H 0.041 0.959 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.021 0.979 29 H -0.003 1.003 30 H 0.267 0.733 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.410 0.590 34 H 0.410 0.590 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -11.934 18.592 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.025 4.025 3 N -0.327 5.327 4 C 0.140 3.860 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.344 3.656 14 O -0.481 6.481 15 C -0.209 4.209 16 C -0.062 4.062 17 C -0.228 4.228 18 C 0.135 3.865 19 N -0.393 5.393 20 C -0.229 4.229 21 C -0.005 4.005 22 C -0.188 4.188 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.039 0.961 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.169 0.831 33 H 0.240 0.760 34 H 0.241 0.759 35 H 0.167 0.833 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.532 -11.258 18.379 22.831 hybrid contribution 0.902 0.311 -0.650 1.155 sum -6.630 -10.946 17.729 21.865 Atomic orbital electron populations 1.22088 0.94815 1.03247 1.01232 1.21833 0.95269 0.81752 1.03660 1.48206 1.62942 1.14914 1.06623 1.18740 0.94787 0.92042 0.80456 1.21706 0.96278 1.33552 1.06712 0.92852 1.25880 1.03128 0.94363 0.95725 1.70062 1.38279 1.35532 1.12957 0.85384 0.78717 0.78325 0.78193 1.18608 1.20555 1.19776 1.18865 0.76045 0.85857 0.84876 1.90655 1.50754 1.18529 1.88146 1.19450 1.05694 1.00315 0.95478 1.20945 0.96490 0.91895 0.96917 1.20652 1.03695 1.03850 0.94555 1.17870 0.91419 0.90443 0.86801 1.42331 1.48225 1.31410 1.17349 1.20483 1.06132 0.98055 0.98223 1.19672 0.93209 0.95041 0.92538 1.21007 0.99634 0.95001 1.03188 0.94019 0.88759 0.93058 0.90713 0.88671 0.96056 0.98514 0.92373 0.86039 0.83115 0.76005 0.75932 0.83347 0.90264 0.89073 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 10.20 71.98 0.73 -3.85 16 2 C 0.10 3.42 5.90 86.38 0.51 3.93 16 3 N -0.60 -27.98 2.47 -829.93 -2.05 -30.02 16 4 C 0.26 14.97 5.18 85.63 0.44 15.42 16 5 C -0.54 -32.66 9.39 25.60 0.24 -32.42 16 6 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 9 Si 0.97 46.01 29.54 68.60 2.03 48.03 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 13 C 0.55 26.20 6.42 86.69 0.56 26.76 16 14 O -0.60 -34.13 14.69 -4.00 -0.06 -34.19 16 15 C -0.20 -7.38 4.87 -20.07 -0.10 -7.48 16 16 C -0.04 -1.28 7.59 22.50 0.17 -1.11 16 17 C -0.21 -4.44 9.87 22.36 0.22 -4.22 16 18 C 0.24 4.65 6.75 38.47 0.26 4.91 16 19 N -0.85 -8.74 9.05 -51.38 -0.47 -9.21 16 20 C -0.21 -4.60 9.54 22.35 0.21 -4.39 16 21 C 0.00 -0.09 5.91 -19.63 -0.12 -0.21 16 22 C -0.13 -4.02 9.68 71.24 0.69 -3.33 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.05 1.52 8.05 -2.39 -0.02 1.50 16 26 H 0.07 2.68 8.03 -2.38 -0.02 2.66 16 27 H 0.10 2.89 4.54 -2.39 -0.01 2.88 16 28 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 29 H 0.00 -0.22 7.35 -2.38 -0.02 -0.23 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 31 H 0.12 3.67 7.38 -2.91 -0.02 3.65 16 32 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.41 2.60 8.83 -92.70 -0.82 1.78 16 34 H 0.41 2.57 8.83 -92.71 -0.82 1.75 16 35 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 38 H 0.05 1.99 5.57 -2.39 -0.01 1.98 16 Total: -1.00 -79.10 318.54 3.47 -75.63 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -0.56 Total: 12.26 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 4.29 Total: -5.04 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -2.23 Total: -96.69 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.06 Total: -34.19 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -79.10 3.47 -75.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044748861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.248 kcal (2) G-P(sol) polarization free energy of solvation -79.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds