Wall clock time and date at job start Mon Mar 30 2020 04:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 111.00326 * 2 1 4 4 H 1.09004 * 109.46542 * 34.99883 * 3 2 1 5 5 C 1.52996 * 109.47016 * 275.00126 * 3 2 1 6 6 C 1.50695 * 109.47342 * 154.99954 * 3 2 1 7 7 O 1.21293 * 119.99902 * 26.90302 * 6 3 2 8 8 N 1.34771 * 120.00081 * 206.63472 * 6 3 2 9 9 C 1.46507 * 120.00062 * 174.67657 * 8 6 3 10 10 C 1.50698 * 109.46902 * 89.99752 * 9 8 6 11 11 H 1.08004 * 120.00379 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99761 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00355 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99828 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47199 * 89.99999 * 14 12 10 16 16 H 1.48504 * 109.46851 * 210.00266 * 14 12 10 17 17 H 1.48499 * 109.46998 * 329.99631 * 14 12 10 18 18 C 1.39924 * 120.00204 * 354.67683 * 8 6 3 19 19 C 1.38875 * 120.07013 * 252.66529 * 18 8 6 20 20 C 1.38115 * 119.92691 * 179.79154 * 19 18 8 21 21 C 1.38278 * 120.06964 * 0.47901 * 20 19 18 22 22 C 1.38274 * 120.14478 * 359.75013 * 21 20 19 23 23 C 1.38119 * 120.07009 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47415 * 300.00310 * 1 2 3 26 26 H 1.09001 * 109.47098 * 59.99714 * 1 2 3 27 27 H 1.00904 * 111.00046 * 236.04858 * 2 1 3 28 28 H 1.09008 * 109.46985 * 179.97438 * 5 3 2 29 29 H 1.08997 * 109.47544 * 299.99569 * 5 3 2 30 30 H 1.09000 * 109.47400 * 59.99772 * 5 3 2 31 31 H 1.08997 * 109.47190 * 209.99877 * 9 8 6 32 32 H 1.08998 * 109.46961 * 329.99875 * 9 8 6 33 33 H 0.97002 * 119.99960 * 179.97438 * 13 12 10 34 34 H 1.07997 * 120.03274 * 0.02562 * 19 18 8 35 35 H 1.07998 * 119.95938 * 180.23136 * 20 19 18 36 36 H 1.08006 * 119.92784 * 179.72605 * 21 20 19 37 37 H 1.08001 * 119.97040 * 180.02562 * 22 21 20 38 38 H 1.08002 * 120.03482 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3397 2.0123 0.5895 5 6 2.0609 1.8926 -1.4370 6 6 3.3776 1.3789 0.6004 7 8 4.0691 0.3840 0.5433 8 7 3.8475 2.4928 1.1962 9 6 5.1421 2.4664 1.8816 10 6 6.2333 2.8305 0.9081 11 1 5.9872 3.0591 -0.1183 12 6 7.5459 2.8727 1.3282 13 7 7.8455 2.5958 2.5785 14 14 8.8985 3.3247 0.1217 15 1 9.1058 4.7951 0.1385 16 1 10.1585 2.6427 0.5124 17 1 8.5066 2.8956 -1.2449 18 6 3.0990 3.6744 1.1601 19 6 3.5043 4.7305 0.3545 20 6 2.7609 5.8939 0.3178 21 6 1.6196 6.0115 1.0896 22 6 1.2160 4.9636 1.8964 23 6 1.9524 3.7957 1.9341 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 2.4512 2.9104 -1.4369 29 1 2.7165 1.2518 -2.0265 30 1 1.0612 1.8872 -1.8713 31 1 5.1333 3.1835 2.7024 32 1 5.3247 1.4663 2.2748 33 1 8.7690 2.6252 2.8738 34 1 4.3978 4.6407 -0.2456 35 1 3.0736 6.7142 -0.3114 36 1 1.0424 6.9240 1.0626 37 1 0.3239 5.0583 2.4978 38 1 1.6369 2.9777 2.5648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049752983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:26 Heat of formation + Delta-G solvation = -0.087929 kcal Electronic energy + Delta-G solvation = -20205.726098 eV Core-core repulsion = 17241.360225 eV Total energy + Delta-G solvation = -2964.365873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02313 -38.18368 -36.03489 -34.67962 -32.67453 -30.70406 -30.37300 -29.32492 -27.18514 -25.33129 -23.74724 -22.61376 -22.22337 -21.46383 -18.95449 -17.30337 -16.55414 -16.07950 -15.68370 -15.13465 -14.85849 -14.64739 -14.22812 -13.85342 -13.63904 -13.41572 -13.12780 -12.72593 -12.50459 -12.32050 -12.17478 -11.99808 -11.65106 -11.51763 -11.33523 -11.07718 -10.92341 -10.87908 -10.60631 -10.16082 -9.66699 -9.21381 -8.66638 -8.54259 -8.41784 -8.15626 -7.70153 -6.04536 -4.08877 1.56166 1.65988 3.29695 3.34640 3.37152 3.41019 3.71062 4.02863 4.42965 4.51118 4.93989 5.14026 5.17745 5.22066 5.27934 5.30310 5.36965 5.42982 5.44388 5.70375 5.76041 5.80717 5.84250 5.85198 6.08334 6.16961 6.30021 6.60326 6.75208 6.87150 6.92930 7.08452 7.24514 7.39331 7.45658 7.53701 7.91512 8.20890 8.43555 8.88835 9.07916 9.55505 11.04005 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016273 B = 0.007673 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.175836 B = 3648.227964 C = 4654.908905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.675 5.675 3 C 0.062 3.938 4 H 0.098 0.902 5 C -0.174 4.174 6 C 0.523 3.477 7 O -0.515 6.515 8 N -0.566 5.566 9 C 0.250 3.750 10 C -0.524 4.524 11 H 0.058 0.942 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.159 3.841 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.132 4.132 22 C -0.115 4.115 23 C -0.135 4.135 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.020 0.980 27 H 0.349 0.651 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 4.269 -4.987 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.306 5.306 3 C -0.052 4.052 4 H 0.116 0.884 5 C -0.233 4.233 6 C 0.309 3.691 7 O -0.388 6.388 8 N -0.296 5.296 9 C 0.132 3.868 10 C -0.562 4.562 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.068 3.932 19 C -0.128 4.128 20 C -0.132 4.132 21 C -0.151 4.151 22 C -0.134 4.134 23 C -0.154 4.154 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.168 0.832 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.281 3.571 -4.183 16.241 hybrid contribution 0.707 0.680 -1.410 1.718 sum -14.575 4.251 -5.593 16.180 Atomic orbital electron populations 1.22224 0.87737 1.01791 1.00195 1.60092 1.07015 1.12373 1.51107 1.21642 0.95671 0.90991 0.96870 0.88370 1.22331 1.02031 1.02964 0.95953 1.20198 0.87522 0.82895 0.78455 1.90664 1.58703 1.32943 1.56520 1.45951 1.21941 1.07012 1.54653 1.19379 0.76496 0.98898 0.91979 1.21374 0.91445 1.46988 0.96440 0.92403 1.24923 0.98551 0.95235 0.95305 1.69930 1.19148 1.48770 1.15406 0.86517 0.81361 0.78320 0.81370 1.20631 1.21047 1.19884 1.17749 0.91785 0.88252 0.95448 1.21606 0.99937 0.92990 0.98252 1.21057 0.95190 0.97394 0.99588 1.21067 0.97436 0.98650 0.97920 1.20925 0.99774 0.93238 0.99460 1.21400 0.96290 0.98511 0.99228 0.91319 0.91806 0.96133 0.83173 0.91162 0.91709 0.92151 0.94887 0.93480 0.92683 0.84836 0.86124 0.86470 0.86238 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.50 60.06 0.63 0.96 16 2 N -0.67 -10.11 6.24 -115.25 -0.72 -10.83 16 3 C 0.06 1.00 2.30 -68.87 -0.16 0.84 16 4 H 0.10 1.47 5.33 -51.93 -0.28 1.19 16 5 C -0.17 -2.44 9.10 37.16 0.34 -2.11 16 6 C 0.52 11.30 6.79 -10.99 -0.07 11.23 16 7 O -0.51 -13.30 16.28 5.55 0.09 -13.21 16 8 N -0.57 -12.44 2.49 -114.74 -0.29 -12.73 16 9 C 0.25 6.68 5.09 -5.19 -0.03 6.65 16 10 C -0.52 -14.80 9.01 -34.44 -0.31 -15.11 16 11 H 0.06 1.62 7.28 -52.48 -0.38 1.23 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 14 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.16 2.91 3.90 -83.69 -0.33 2.59 16 19 C -0.11 -1.86 9.25 -39.39 -0.36 -2.22 16 20 C -0.11 -1.56 10.04 -39.61 -0.40 -1.96 16 21 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16 22 C -0.12 -1.45 10.04 -39.61 -0.40 -1.85 16 23 C -0.13 -2.06 8.01 -39.39 -0.32 -2.37 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 26 H 0.02 0.20 7.44 -51.93 -0.39 -0.19 16 27 H 0.35 5.06 8.56 -39.29 -0.34 4.73 16 28 H 0.07 1.03 7.16 -51.92 -0.37 0.65 16 29 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 30 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 31 H 0.03 0.91 8.05 -51.93 -0.42 0.49 16 32 H 0.05 1.41 7.51 -51.93 -0.39 1.02 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.13 2.50 7.28 -52.49 -0.38 2.12 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.79 7.98 -52.49 -0.42 1.37 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -32.65 319.53 -7.70 -40.34 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.42 Total: 4.42 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.90 Total: -3.69 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.27 Total: -49.54 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.65 -7.70 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049752983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.254 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds