Wall clock time and date at job start Mon Mar 30 2020 04:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 111.00326 * 2 1 4 4 H 1.09004 * 109.46542 * 34.99883 * 3 2 1 5 5 C 1.52996 * 109.47016 * 275.00126 * 3 2 1 6 6 C 1.50695 * 109.47342 * 154.99954 * 3 2 1 7 7 O 1.21293 * 119.99902 * 26.90302 * 6 3 2 8 8 N 1.34771 * 120.00081 * 206.63472 * 6 3 2 9 9 C 1.46507 * 120.00062 * 174.67657 * 8 6 3 10 10 C 1.50698 * 109.46902 * 89.99752 * 9 8 6 11 11 H 1.08004 * 120.00379 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99761 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00355 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99828 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47199 * 89.99999 * 14 12 10 16 16 H 1.48504 * 109.46851 * 210.00266 * 14 12 10 17 17 H 1.48499 * 109.46998 * 329.99631 * 14 12 10 18 18 C 1.39924 * 120.00204 * 354.67683 * 8 6 3 19 19 C 1.38875 * 120.07013 * 252.66529 * 18 8 6 20 20 C 1.38115 * 119.92691 * 179.79154 * 19 18 8 21 21 C 1.38278 * 120.06964 * 0.47901 * 20 19 18 22 22 C 1.38274 * 120.14478 * 359.75013 * 21 20 19 23 23 C 1.38119 * 120.07009 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47415 * 300.00310 * 1 2 3 26 26 H 1.09001 * 109.47098 * 59.99714 * 1 2 3 27 27 H 1.00904 * 111.00046 * 236.04858 * 2 1 3 28 28 H 1.09008 * 109.46985 * 179.97438 * 5 3 2 29 29 H 1.08997 * 109.47544 * 299.99569 * 5 3 2 30 30 H 1.09000 * 109.47400 * 59.99772 * 5 3 2 31 31 H 1.08997 * 109.47190 * 209.99877 * 9 8 6 32 32 H 1.08998 * 109.46961 * 329.99875 * 9 8 6 33 33 H 0.97002 * 119.99960 * 179.97438 * 13 12 10 34 34 H 1.07997 * 120.03274 * 0.02562 * 19 18 8 35 35 H 1.07998 * 119.95938 * 180.23136 * 20 19 18 36 36 H 1.08006 * 119.92784 * 179.72605 * 21 20 19 37 37 H 1.08001 * 119.97040 * 180.02562 * 22 21 20 38 38 H 1.08002 * 120.03482 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3397 2.0123 0.5895 5 6 2.0609 1.8926 -1.4370 6 6 3.3776 1.3789 0.6004 7 8 4.0691 0.3840 0.5433 8 7 3.8475 2.4928 1.1962 9 6 5.1421 2.4664 1.8816 10 6 6.2333 2.8305 0.9081 11 1 5.9872 3.0591 -0.1183 12 6 7.5459 2.8727 1.3282 13 7 7.8455 2.5958 2.5785 14 14 8.8985 3.3247 0.1217 15 1 9.1058 4.7951 0.1385 16 1 10.1585 2.6427 0.5124 17 1 8.5066 2.8956 -1.2449 18 6 3.0990 3.6744 1.1601 19 6 3.5043 4.7305 0.3545 20 6 2.7609 5.8939 0.3178 21 6 1.6196 6.0115 1.0896 22 6 1.2160 4.9636 1.8964 23 6 1.9524 3.7957 1.9341 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 2.4512 2.9104 -1.4369 29 1 2.7165 1.2518 -2.0265 30 1 1.0612 1.8872 -1.8713 31 1 5.1333 3.1835 2.7024 32 1 5.3247 1.4663 2.2748 33 1 8.7690 2.6252 2.8738 34 1 4.3978 4.6407 -0.2456 35 1 3.0736 6.7142 -0.3114 36 1 1.0424 6.9240 1.0626 37 1 0.3239 5.0583 2.4978 38 1 1.6369 2.9777 2.5648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049752983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:26 Heat of formation + Delta-G solvation = -22.577242 kcal Electronic energy + Delta-G solvation = -20206.701308 eV Core-core repulsion = 17241.360225 eV Total energy + Delta-G solvation = -2965.341083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.52231 -39.52046 -37.34737 -36.36747 -34.77460 -31.89219 -31.59354 -30.73425 -29.06303 -26.48812 -25.42546 -24.12912 -23.40229 -22.85563 -20.40782 -18.84168 -18.57078 -17.51375 -17.14948 -16.50986 -16.44252 -16.03302 -15.57217 -15.28641 -15.05527 -14.74510 -14.37291 -14.25490 -13.81595 -13.70499 -13.50025 -13.30790 -13.25315 -13.05071 -12.69393 -12.64804 -12.54693 -12.40065 -12.12885 -12.05655 -11.66104 -10.83409 -10.66976 -9.96333 -9.79646 -9.40053 -9.27604 -8.25605 -6.39680 0.38262 0.52347 1.33132 1.36638 1.46790 1.72648 2.13585 2.37856 2.87885 3.04232 3.31806 3.60263 3.96684 4.06803 4.11015 4.17611 4.34617 4.49831 4.55875 4.61866 4.62237 4.70930 4.71467 4.82166 4.99859 5.01045 5.07053 5.11378 5.18666 5.45242 5.57873 5.65609 5.66179 5.79525 5.92077 6.01448 6.10433 6.35735 6.66424 6.78420 7.24694 7.42394 8.82723 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016273 B = 0.007673 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.175836 B = 3648.227964 C = 4654.908905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.697 5.697 3 C 0.079 3.921 4 H 0.114 0.886 5 C -0.165 4.165 6 C 0.510 3.490 7 O -0.574 6.574 8 N -0.567 5.567 9 C 0.268 3.732 10 C -0.535 4.535 11 H 0.053 0.947 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.968 3.032 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.272 1.272 18 C 0.122 3.878 19 C -0.130 4.130 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.102 4.102 23 C -0.139 4.139 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.349 0.651 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.015 0.985 32 H 0.000 1.000 33 H 0.268 0.732 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.547 6.712 -6.110 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.329 5.329 3 C -0.034 4.034 4 H 0.132 0.868 5 C -0.224 4.224 6 C 0.299 3.701 7 O -0.452 6.452 8 N -0.296 5.296 9 C 0.148 3.852 10 C -0.574 4.574 11 H 0.072 0.928 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.792 3.208 15 H -0.187 1.187 16 H -0.205 1.205 17 H -0.197 1.197 18 C 0.031 3.969 19 C -0.149 4.149 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.120 4.120 23 C -0.159 4.159 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.168 0.832 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.033 0.967 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.975 6.054 -5.311 19.697 hybrid contribution 1.427 -0.026 -1.003 1.744 sum -16.549 6.028 -6.314 18.710 Atomic orbital electron populations 1.22322 0.84894 1.03210 1.01327 1.60038 1.09638 1.11649 1.51583 1.21473 0.91918 0.92254 0.97738 0.86778 1.22282 1.03851 1.01933 0.94374 1.21404 0.89479 0.81740 0.77449 1.90612 1.60800 1.34963 1.58834 1.45792 1.20692 1.09070 1.54002 1.18764 0.79321 0.95357 0.91764 1.21585 0.92385 1.47029 0.96379 0.92834 1.25873 1.01119 0.94923 0.97224 1.70059 1.19915 1.49569 1.17326 0.85411 0.77873 0.78913 0.78615 1.18690 1.20455 1.19712 1.17990 0.93307 0.87286 0.98271 1.21489 1.00042 0.94487 0.98902 1.21345 0.95150 0.96411 0.99827 1.21562 0.96308 0.99775 0.95650 1.21358 1.00079 0.91646 0.98913 1.21461 0.95613 1.00026 0.98779 0.89883 0.91372 0.94076 0.83223 0.91913 0.92982 0.88465 0.96699 0.98163 0.92345 0.87793 0.83592 0.82191 0.82347 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.50 127.69 1.34 1.95 16 2 N -0.70 -20.60 6.24 -518.54 -3.23 -23.83 16 3 C 0.08 2.56 2.30 44.17 0.10 2.66 16 4 H 0.11 3.28 5.33 -2.38 -0.01 3.26 16 5 C -0.17 -4.50 9.10 71.98 0.66 -3.85 16 6 C 0.51 23.31 6.79 87.66 0.60 23.90 16 7 O -0.57 -31.90 16.28 -3.07 -0.05 -31.95 16 8 N -0.57 -26.50 2.49 -635.31 -1.58 -28.08 16 9 C 0.27 15.43 5.09 85.63 0.44 15.87 16 10 C -0.54 -31.96 9.01 25.60 0.23 -31.73 16 11 H 0.05 3.16 7.28 -2.91 -0.02 3.14 16 12 C 0.01 0.44 5.46 84.65 0.46 0.91 16 13 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 14 Si 0.97 45.99 29.54 68.60 2.03 48.02 16 15 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 18 C 0.12 4.52 3.90 38.15 0.15 4.67 16 19 C -0.13 -4.47 9.25 22.39 0.21 -4.26 16 20 C -0.11 -2.68 10.04 22.25 0.22 -2.46 16 21 C -0.12 -2.23 10.04 22.29 0.22 -2.01 16 22 C -0.10 -2.12 10.04 22.25 0.22 -1.90 16 23 C -0.14 -4.07 8.01 22.39 0.18 -3.89 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.28 8.05 -2.39 -0.02 1.26 16 26 H 0.04 0.65 7.44 -2.39 -0.02 0.63 16 27 H 0.35 10.15 8.56 -89.69 -0.77 9.38 16 28 H 0.06 1.80 7.16 -2.38 -0.02 1.79 16 29 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.10 1.92 7.45 -2.39 -0.02 1.90 16 31 H 0.02 0.89 8.05 -2.39 -0.02 0.87 16 32 H 0.00 0.02 7.51 -2.39 -0.02 0.00 16 33 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.10 4.12 7.28 -2.91 -0.02 4.09 16 35 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.12 3.47 7.98 -2.91 -0.02 3.45 16 Total: -1.00 -77.31 319.53 2.76 -74.56 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.29 Total: 18.97 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.03 Total: -0.14 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.53 Total: -109.45 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.05 Total: -31.95 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.31 2.76 -74.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049752983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.978 kcal (2) G-P(sol) polarization free energy of solvation -77.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds