Wall clock time and date at job start Mon Mar 30 2020 05:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20761 * 119.99967 * 2 1 4 4 C 1.50697 * 119.99898 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46835 * 180.02562 * 4 2 1 6 6 N 1.46898 * 109.46866 * 180.82054 * 5 4 2 7 7 C 1.46896 * 111.00281 * 299.17845 * 6 5 4 8 8 C 1.50697 * 109.47164 * 293.97329 * 7 6 5 9 9 H 1.08004 * 120.00109 * 355.06053 * 8 7 6 10 10 C 1.37881 * 120.00493 * 175.04990 * 8 7 6 11 11 N 1.31515 * 119.99491 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00371 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46889 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46763 * 120.00498 * 12 10 8 15 15 H 1.48498 * 109.47115 * 240.00476 * 12 10 8 16 16 C 1.46909 * 111.00023 * 63.13271 * 6 5 4 17 17 C 1.50700 * 109.46902 * 66.04152 * 16 6 5 18 18 C 1.38668 * 120.41887 * 270.24976 * 17 16 6 19 19 C 1.38630 * 118.41484 * 180.24432 * 18 17 16 20 20 C 1.38221 * 119.16588 * 359.75373 * 19 18 17 21 21 N 1.31857 * 120.76449 * 0.02562 * 20 19 18 22 22 C 1.31884 * 121.72280 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.47782 * 270.00185 * 1 2 3 24 24 H 1.09005 * 109.47153 * 30.00803 * 1 2 3 25 25 H 1.09004 * 109.47229 * 149.99906 * 1 2 3 26 26 H 1.09003 * 109.46691 * 60.01111 * 4 2 1 27 27 H 1.08998 * 109.47744 * 300.00464 * 4 2 1 28 28 H 1.09000 * 109.46711 * 60.82501 * 5 4 2 29 29 H 1.08998 * 109.47437 * 300.82182 * 5 4 2 30 30 H 1.09005 * 109.47453 * 53.97689 * 7 6 5 31 31 H 1.09006 * 109.47649 * 173.97666 * 7 6 5 32 32 H 0.96997 * 120.00133 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.46687 * 306.04518 * 16 6 5 34 34 H 1.09002 * 109.47121 * 186.04459 * 16 6 5 35 35 H 1.08001 * 120.79290 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.41407 * 179.73087 * 19 18 17 37 37 H 1.08003 * 119.62249 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.61858 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0254 0.0011 6 7 4.4992 -2.2975 -0.0182 7 6 4.1861 -3.1043 1.1688 8 6 4.7057 -2.4085 2.4004 9 1 5.2863 -1.5029 2.3047 10 6 4.4396 -2.9278 3.6497 11 7 3.7328 -4.0307 3.7664 12 14 5.0831 -2.0649 5.1764 13 1 5.8435 -0.8536 4.7769 14 1 3.9413 -1.6698 6.0399 15 1 5.9754 -2.9851 5.9261 16 6 4.2229 -3.0463 -1.2515 17 6 4.7796 -2.2929 -2.4320 18 6 4.0019 -1.3579 -3.0983 19 6 4.5540 -0.6926 -4.1820 20 6 5.8536 -0.9775 -4.5565 21 7 6.5655 -1.8699 -3.8965 22 6 6.0730 -2.5217 -2.8612 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5140 25 1 -0.3634 -0.8900 -0.5139 26 1 1.9972 -1.8769 -0.8893 27 1 1.9971 -1.8764 0.8907 28 1 4.0300 -0.4663 0.8984 29 1 4.0261 -0.4416 -0.8814 30 1 3.1061 -3.2279 1.2497 31 1 4.6579 -4.0827 1.0781 32 1 3.5459 -4.3963 4.6451 33 1 3.1460 -3.1647 -1.3711 34 1 4.6922 -4.0284 -1.1931 35 1 2.9888 -1.1561 -2.7832 36 1 3.9757 0.0388 -4.7270 37 1 6.2912 -0.4633 -5.3994 38 1 6.6862 -3.2460 -2.3456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050132745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:49 Heat of formation + Delta-G solvation = -1.391259 kcal Electronic energy + Delta-G solvation = -19717.875076 eV Core-core repulsion = 16753.452686 eV Total energy + Delta-G solvation = -2964.422390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.12672 -39.21690 -37.05537 -33.03658 -32.20572 -31.72906 -30.85313 -29.04700 -27.29893 -25.18175 -23.63665 -23.26796 -21.79224 -20.08695 -18.99419 -16.92364 -16.35153 -16.32305 -15.77899 -15.43758 -15.11404 -14.70801 -14.63484 -14.24899 -13.59128 -13.42129 -13.19561 -13.03351 -12.69449 -12.44717 -12.16350 -11.97601 -11.88971 -11.47316 -11.19127 -11.07104 -10.70734 -10.65034 -10.24080 -9.92064 -9.59350 -9.50098 -9.28356 -9.19261 -8.77951 -8.48806 -7.32887 -6.09279 -4.10112 1.29809 1.44311 2.21646 3.28094 3.36317 3.42531 3.96601 4.31571 4.40277 4.61589 4.90970 4.98635 5.04505 5.15655 5.21004 5.23676 5.26984 5.36030 5.48003 5.52287 5.61595 5.68543 5.80935 5.93997 5.99123 6.08485 6.15694 6.26567 6.41020 6.49058 6.80815 6.88471 7.19006 7.24580 7.73882 7.75935 7.98672 8.07618 8.14701 8.44874 8.98793 9.54947 11.01115 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.006446 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.026215 B = 4342.426992 C = 5485.517464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.359 3.641 3 O -0.462 6.462 4 C -0.215 4.215 5 C 0.075 3.925 6 N -0.527 5.527 7 C 0.188 3.812 8 C -0.506 4.506 9 H 0.064 0.936 10 C 0.057 3.943 11 N -0.899 5.899 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.283 1.283 16 C 0.087 3.913 17 C -0.111 4.111 18 C -0.072 4.072 19 C -0.176 4.176 20 C 0.086 3.914 21 N -0.488 5.488 22 C 0.115 3.885 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.003 0.997 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 3.687 -12.911 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.235 3.765 3 O -0.337 6.337 4 C -0.254 4.254 5 C -0.054 4.054 6 N -0.249 5.249 7 C 0.064 3.936 8 C -0.545 4.545 9 H 0.082 0.918 10 C -0.144 4.144 11 N -0.539 5.539 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.042 4.042 17 C -0.114 4.114 18 C -0.099 4.099 19 C -0.196 4.196 20 C -0.072 4.072 21 N -0.197 5.197 22 C -0.042 4.042 23 H 0.112 0.888 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.020 0.980 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.167 0.833 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.595 4.031 -13.016 14.092 hybrid contribution -1.673 0.264 1.249 2.104 sum -5.267 4.295 -11.767 13.589 Atomic orbital electron populations 1.22318 0.95316 1.04050 1.04589 1.24619 0.91560 0.90560 0.69811 1.90383 1.72037 1.35263 1.35993 1.22879 1.00250 0.97449 1.04773 1.21909 0.87668 0.92971 1.02815 1.62410 1.55993 1.04941 1.01581 1.19844 0.95187 0.92838 0.85776 1.21186 1.33004 1.10402 0.89860 0.91779 1.24954 0.95285 0.95086 0.99109 1.69953 1.39496 1.20616 1.23793 0.86486 0.78685 0.79760 0.82839 1.19596 1.21127 1.20957 1.21042 0.97907 0.96697 0.88505 1.20972 0.95603 0.97599 0.97178 1.21486 0.99973 0.94289 0.94152 1.22051 0.97342 1.01570 0.98609 1.22649 0.91298 0.94696 0.98524 1.67688 1.37471 1.07095 1.07426 1.22681 0.92572 0.97001 0.91916 0.88750 0.90247 0.89997 0.89491 0.86722 0.89429 0.92159 0.97962 0.95324 0.92964 0.94355 0.89955 0.85626 0.85314 0.83322 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.21 10.25 36.01 0.37 -1.84 16 2 C 0.36 5.38 7.27 -29.04 -0.21 5.17 16 3 O -0.46 -8.50 16.72 6.00 0.10 -8.40 16 4 C -0.21 -3.42 4.91 -27.88 -0.14 -3.55 16 5 C 0.08 1.43 4.11 -3.82 -0.02 1.41 16 6 N -0.53 -10.57 4.69 -237.51 -1.11 -11.68 16 7 C 0.19 4.50 4.49 -4.98 -0.02 4.48 16 8 C -0.51 -13.63 8.40 -34.44 -0.29 -13.91 16 9 H 0.06 1.77 7.30 -52.48 -0.38 1.39 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 12 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.09 1.42 4.95 -4.97 -0.02 1.39 16 17 C -0.11 -1.67 4.90 -104.48 -0.51 -2.19 16 18 C -0.07 -0.98 8.08 -39.28 -0.32 -1.29 16 19 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 20 C 0.09 1.10 11.18 -17.55 -0.20 0.90 16 21 N -0.49 -7.46 10.36 -13.25 -0.14 -7.60 16 22 C 0.12 1.77 10.86 -17.55 -0.19 1.58 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 26 H 0.09 1.18 5.77 -51.93 -0.30 0.88 16 27 H 0.11 2.06 6.34 -51.93 -0.33 1.73 16 28 H 0.09 1.94 6.91 -51.93 -0.36 1.58 16 29 H 0.06 1.11 5.88 -51.93 -0.31 0.80 16 30 H 0.00 0.07 6.04 -51.93 -0.31 -0.25 16 31 H 0.03 0.73 7.93 -51.93 -0.41 0.32 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.04 0.58 6.04 -51.93 -0.31 0.26 16 34 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 35 H 0.13 1.54 7.43 -52.49 -0.39 1.15 16 36 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.16 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -30.83 315.32 -7.91 -38.75 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.19 Total: 1.55 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.04 Total: -8.93 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.52 Total: -44.06 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.10 Total: -8.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.83 -7.91 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.357 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds