Wall clock time and date at job start Mon Mar 30 2020 05:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20761 * 119.99967 * 2 1 4 4 C 1.50697 * 119.99898 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46835 * 180.02562 * 4 2 1 6 6 N 1.46898 * 109.46866 * 180.82054 * 5 4 2 7 7 C 1.46896 * 111.00281 * 299.17845 * 6 5 4 8 8 C 1.50697 * 109.47164 * 293.97329 * 7 6 5 9 9 H 1.08004 * 120.00109 * 355.06053 * 8 7 6 10 10 C 1.37881 * 120.00493 * 175.04990 * 8 7 6 11 11 N 1.31515 * 119.99491 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00371 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46889 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46763 * 120.00498 * 12 10 8 15 15 H 1.48498 * 109.47115 * 240.00476 * 12 10 8 16 16 C 1.46909 * 111.00023 * 63.13271 * 6 5 4 17 17 C 1.50700 * 109.46902 * 66.04152 * 16 6 5 18 18 C 1.38668 * 120.41887 * 270.24976 * 17 16 6 19 19 C 1.38630 * 118.41484 * 180.24432 * 18 17 16 20 20 C 1.38221 * 119.16588 * 359.75373 * 19 18 17 21 21 N 1.31857 * 120.76449 * 0.02562 * 20 19 18 22 22 C 1.31884 * 121.72280 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.47782 * 270.00185 * 1 2 3 24 24 H 1.09005 * 109.47153 * 30.00803 * 1 2 3 25 25 H 1.09004 * 109.47229 * 149.99906 * 1 2 3 26 26 H 1.09003 * 109.46691 * 60.01111 * 4 2 1 27 27 H 1.08998 * 109.47744 * 300.00464 * 4 2 1 28 28 H 1.09000 * 109.46711 * 60.82501 * 5 4 2 29 29 H 1.08998 * 109.47437 * 300.82182 * 5 4 2 30 30 H 1.09005 * 109.47453 * 53.97689 * 7 6 5 31 31 H 1.09006 * 109.47649 * 173.97666 * 7 6 5 32 32 H 0.96997 * 120.00133 * 179.97438 * 11 10 8 33 33 H 1.08999 * 109.46687 * 306.04518 * 16 6 5 34 34 H 1.09002 * 109.47121 * 186.04459 * 16 6 5 35 35 H 1.08001 * 120.79290 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.41407 * 179.73087 * 19 18 17 37 37 H 1.08003 * 119.62249 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.61858 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0254 0.0011 6 7 4.4992 -2.2975 -0.0182 7 6 4.1861 -3.1043 1.1688 8 6 4.7057 -2.4085 2.4004 9 1 5.2863 -1.5029 2.3047 10 6 4.4396 -2.9278 3.6497 11 7 3.7328 -4.0307 3.7664 12 14 5.0831 -2.0649 5.1764 13 1 5.8435 -0.8536 4.7769 14 1 3.9413 -1.6698 6.0399 15 1 5.9754 -2.9851 5.9261 16 6 4.2229 -3.0463 -1.2515 17 6 4.7796 -2.2929 -2.4320 18 6 4.0019 -1.3579 -3.0983 19 6 4.5540 -0.6926 -4.1820 20 6 5.8536 -0.9775 -4.5565 21 7 6.5655 -1.8699 -3.8965 22 6 6.0730 -2.5217 -2.8612 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5140 25 1 -0.3634 -0.8900 -0.5139 26 1 1.9972 -1.8769 -0.8893 27 1 1.9971 -1.8764 0.8907 28 1 4.0300 -0.4663 0.8984 29 1 4.0261 -0.4416 -0.8814 30 1 3.1061 -3.2279 1.2497 31 1 4.6579 -4.0827 1.0781 32 1 3.5459 -4.3963 4.6451 33 1 3.1460 -3.1647 -1.3711 34 1 4.6922 -4.0284 -1.1931 35 1 2.9888 -1.1561 -2.7832 36 1 3.9757 0.0388 -4.7270 37 1 6.2912 -0.4633 -5.3994 38 1 6.6862 -3.2460 -2.3456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050132745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:49 Heat of formation + Delta-G solvation = -21.529732 kcal Electronic energy + Delta-G solvation = -19718.748346 eV Core-core repulsion = 16753.452686 eV Total energy + Delta-G solvation = -2965.295660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.27913 -40.46689 -38.55025 -34.90803 -33.56461 -32.85548 -32.10107 -30.30010 -28.99982 -26.59261 -25.27727 -24.40501 -23.15388 -21.46545 -20.36374 -18.39766 -17.94306 -17.55361 -17.10548 -16.85218 -16.52044 -16.11413 -15.83831 -15.77244 -14.97790 -14.60126 -14.50279 -14.30425 -14.05270 -13.88941 -13.45312 -13.11213 -13.02361 -12.95451 -12.83401 -12.75559 -12.49157 -12.31544 -11.96058 -11.62263 -11.31749 -10.72522 -10.63347 -10.55981 -10.35198 -9.89309 -8.92862 -8.20017 -6.27427 0.22834 0.37916 1.02596 1.37089 1.39870 1.51768 2.39450 2.85656 3.12331 3.16449 3.51443 3.61758 3.88581 3.92622 4.03069 4.11429 4.16355 4.19264 4.27881 4.50537 4.52839 4.63397 4.68577 4.77040 4.85572 4.88775 4.92945 5.14868 5.18520 5.21542 5.32171 5.39621 5.41045 5.66797 5.83717 6.07779 6.31008 6.58290 6.64114 6.88091 7.07766 7.41538 8.89695 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.006446 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.026215 B = 4342.426992 C = 5485.517464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.363 3.637 3 O -0.502 6.502 4 C -0.208 4.208 5 C 0.083 3.917 6 N -0.540 5.540 7 C 0.205 3.795 8 C -0.520 4.520 9 H 0.049 0.951 10 C 0.012 3.988 11 N -0.926 5.926 12 Si 0.953 3.047 13 H -0.274 1.274 14 H -0.277 1.277 15 H -0.277 1.277 16 C 0.092 3.908 17 C -0.124 4.124 18 C -0.077 4.077 19 C -0.168 4.168 20 C 0.082 3.918 21 N -0.512 5.512 22 C 0.098 3.902 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.068 0.932 30 H -0.005 1.005 31 H 0.006 0.994 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 4.697 -14.261 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.241 3.759 3 O -0.379 6.379 4 C -0.247 4.247 5 C -0.046 4.046 6 N -0.263 5.263 7 C 0.079 3.921 8 C -0.558 4.558 9 H 0.067 0.933 10 C -0.186 4.186 11 N -0.566 5.566 12 Si 0.779 3.221 13 H -0.199 1.199 14 H -0.202 1.202 15 H -0.203 1.203 16 C -0.036 4.036 17 C -0.127 4.127 18 C -0.103 4.103 19 C -0.187 4.187 20 C -0.075 4.075 21 N -0.221 5.221 22 C -0.058 4.058 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.012 0.988 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.198 0.802 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.958 5.031 -14.376 16.018 hybrid contribution -1.220 -0.025 1.562 1.982 sum -6.178 5.007 -12.814 15.081 Atomic orbital electron populations 1.22296 0.91265 1.06138 1.05642 1.25020 0.93610 0.89128 0.68155 1.90380 1.73261 1.36199 1.38037 1.22784 0.98176 0.98589 1.05171 1.21698 0.89832 0.91956 1.01068 1.62225 1.57032 1.05213 1.01840 1.19472 0.94068 0.91909 0.86663 1.21420 1.32873 1.10026 0.91500 0.93296 1.25657 0.95511 0.95703 1.01752 1.70033 1.40385 1.21644 1.24586 0.85576 0.78314 0.78622 0.79598 1.19881 1.20232 1.20297 1.21013 0.99012 0.96330 0.87263 1.20816 0.95908 0.98751 0.97197 1.21732 1.00520 0.93687 0.94385 1.22428 0.97192 1.01279 0.97827 1.23267 0.91708 0.93756 0.98756 1.67700 1.38421 1.08141 1.07803 1.22704 0.92916 0.97627 0.92571 0.87962 0.88853 0.87280 0.86506 0.88773 0.93497 0.91375 0.98767 0.97607 0.92674 0.92670 0.90333 0.84163 0.81807 0.80185 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.62 10.25 71.24 0.73 -2.89 16 2 C 0.36 10.34 7.27 29.10 0.21 10.55 16 3 O -0.50 -18.14 16.72 -1.45 -0.02 -18.17 16 4 C -0.21 -6.48 4.91 29.85 0.15 -6.33 16 5 C 0.08 3.19 4.11 86.31 0.35 3.55 16 6 N -0.54 -22.19 4.69 -905.34 -4.25 -26.44 16 7 C 0.20 10.12 4.49 85.56 0.38 10.50 16 8 C -0.52 -28.88 8.40 25.60 0.22 -28.66 16 9 H 0.05 2.81 7.30 -2.91 -0.02 2.79 16 10 C 0.01 0.69 5.46 84.66 0.46 1.15 16 11 N -0.93 -53.23 13.29 21.45 0.28 -52.94 16 12 Si 0.95 44.33 29.54 68.60 2.03 46.35 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 16 C 0.09 2.98 4.95 85.56 0.42 3.41 16 17 C -0.12 -3.65 4.90 -19.77 -0.10 -3.75 16 18 C -0.08 -1.89 8.08 22.47 0.18 -1.71 16 19 C -0.17 -3.52 10.11 22.36 0.23 -3.29 16 20 C 0.08 1.90 11.18 84.68 0.95 2.85 16 21 N -0.51 -15.14 10.36 -195.84 -2.03 -17.17 16 22 C 0.10 3.02 10.86 84.67 0.92 3.94 16 23 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.11 1.44 8.12 -2.38 -0.02 1.42 16 26 H 0.12 2.88 5.77 -2.39 -0.01 2.87 16 27 H 0.09 3.40 6.34 -2.39 -0.02 3.38 16 28 H 0.05 2.17 6.91 -2.39 -0.02 2.15 16 29 H 0.07 2.49 5.88 -2.39 -0.01 2.48 16 30 H -0.01 -0.27 6.04 -2.38 -0.01 -0.28 16 31 H 0.01 0.31 7.93 -2.38 -0.02 0.29 16 32 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.06 1.59 6.04 -2.39 -0.01 1.58 16 34 H 0.08 2.57 7.88 -2.39 -0.02 2.56 16 35 H 0.14 2.99 7.43 -2.91 -0.02 2.97 16 36 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -68.19 315.32 2.17 -66.03 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.05 Total: 13.04 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 5.11 Total: -10.70 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -5.99 Total: -96.56 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.02 Total: -18.17 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.19 2.17 -66.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.497 kcal (2) G-P(sol) polarization free energy of solvation -68.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds