Wall clock time and date at job start Mon Mar 30 2020 04:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.50691 * 109.47283 * 120.00139 * 2 1 3 5 5 H 1.07997 * 119.99993 * 120.00064 * 4 2 1 6 6 C 1.37878 * 120.00443 * 300.00247 * 4 2 1 7 7 N 1.31521 * 119.99732 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00505 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47440 * 89.99770 * 8 6 4 10 10 H 1.48499 * 109.47175 * 209.99848 * 8 6 4 11 11 H 1.48506 * 109.47058 * 329.99925 * 8 6 4 12 12 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 13 13 C 1.34784 * 119.99971 * 84.99732 * 12 2 1 14 14 O 1.21274 * 119.99897 * 359.72827 * 13 12 2 15 15 C 1.50695 * 119.99635 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47651 * 40.00319 * 15 13 12 17 17 N 1.46907 * 109.46735 * 160.00100 * 15 13 12 18 18 C 1.52997 * 109.47423 * 279.99926 * 15 13 12 19 19 C 1.50699 * 109.47617 * 175.00152 * 18 15 13 20 20 C 1.38226 * 120.00229 * 269.73062 * 19 18 15 21 21 C 1.38233 * 120.00314 * 179.76303 * 20 19 18 22 22 C 1.38235 * 120.00001 * 0.50289 * 21 20 19 23 23 C 1.38243 * 119.99481 * 359.75270 * 22 21 20 24 24 C 1.38231 * 120.00057 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 28 28 H 0.96997 * 120.00122 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99984 * 264.99579 * 12 2 1 30 30 H 1.00891 * 110.99927 * 296.04530 * 17 15 13 31 31 H 1.00897 * 111.00006 * 60.00051 * 17 15 13 32 32 H 1.08998 * 109.47257 * 295.00300 * 18 15 13 33 33 H 1.08999 * 109.47106 * 54.99829 * 18 15 13 34 34 H 1.08005 * 120.00073 * 359.97438 * 20 19 18 35 35 H 1.07998 * 120.00682 * 180.23029 * 21 20 19 36 36 H 1.07993 * 120.00482 * 179.72123 * 22 21 20 37 37 H 1.08006 * 119.99469 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.99725 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6035 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1122 11 1 2.4881 -2.5655 3.7121 12 7 2.0183 -0.6905 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8538 1.1574 -2.4128 15 6 2.6498 -0.7283 -3.5875 16 1 2.2156 -1.7270 -3.6336 17 7 2.2610 0.0303 -4.7840 18 6 4.1746 -0.8375 -3.5260 19 6 4.6674 -1.6538 -4.6930 20 6 4.8008 -3.0241 -4.5707 21 6 5.2482 -3.7735 -5.6427 22 6 5.5719 -3.1512 -6.8338 23 6 5.4435 -1.7801 -6.9545 24 6 4.9908 -1.0314 -5.8842 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 0.7094 1.1617 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 1.2574 0.0614 -4.8821 31 1 2.6515 0.9605 -4.7651 32 1 4.6123 0.1598 -3.5696 33 1 4.4669 -1.3221 -2.5944 34 1 4.5524 -3.5098 -3.6385 35 1 5.3489 -4.8446 -5.5483 36 1 5.9257 -3.7360 -7.6699 37 1 5.6968 -1.2938 -7.8850 38 1 4.8908 0.0398 -5.9784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392361.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:17 Heat of formation + Delta-G solvation = -28.603675 kcal Electronic energy + Delta-G solvation = -19216.542337 eV Core-core repulsion = 16250.939928 eV Total energy + Delta-G solvation = -2965.602409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.66224 -38.79501 -35.35584 -34.57845 -32.40859 -31.59027 -30.82793 -29.21338 -27.48229 -25.30812 -23.98839 -22.50087 -21.30495 -20.51075 -19.42417 -17.40395 -16.74079 -16.17847 -15.65149 -15.48623 -15.04695 -14.87546 -14.41942 -13.85280 -13.61663 -13.34559 -13.32372 -12.72970 -12.61397 -12.41630 -11.82833 -11.71388 -11.33609 -11.10306 -11.04591 -10.99183 -10.89579 -10.78366 -10.34629 -10.27566 -9.68303 -9.10493 -8.86961 -8.67293 -8.59888 -8.35634 -7.97484 -6.15803 -4.25571 1.40128 1.47150 3.22031 3.24975 3.29097 3.30914 3.84248 4.07676 4.34935 4.62291 4.86109 4.93898 5.02403 5.14869 5.16368 5.26186 5.31623 5.49393 5.55765 5.61895 5.80249 5.93383 6.11752 6.12376 6.50372 6.54387 6.72516 6.76890 6.90639 7.05255 7.10006 7.13558 7.39763 7.49386 7.52982 7.65058 7.86403 8.10655 8.60128 8.72812 9.04302 9.42154 10.90105 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027732 B = 0.004246 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.418587 B = 6593.067136 C = 7310.836696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.704 5.704 13 C 0.468 3.532 14 O -0.560 6.560 15 C 0.080 3.920 16 H 0.097 0.903 17 N -0.817 5.817 18 C -0.070 4.070 19 C -0.061 4.061 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.092 4.092 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.013 0.987 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.343 0.657 31 H 0.346 0.654 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 -7.288 -15.050 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.351 5.351 13 C 0.250 3.750 14 O -0.440 6.440 15 C -0.036 4.036 16 H 0.115 0.885 17 N -0.346 5.346 18 C -0.108 4.108 19 C -0.061 4.061 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.110 4.110 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.996 -6.879 -15.322 18.194 hybrid contribution -0.183 -0.283 1.620 1.654 sum 6.813 -7.161 -13.702 16.895 Atomic orbital electron populations 1.22067 0.98493 0.99076 1.00830 1.18749 0.91018 0.93968 0.80237 0.93504 1.21213 1.32493 1.13255 0.90335 0.92057 1.24898 0.94755 0.94954 0.99105 1.69904 1.35826 1.22466 1.23920 0.86442 0.78627 0.79850 0.82151 1.20524 1.21049 1.19807 1.46626 1.64201 1.13552 1.10713 1.21738 0.79088 0.88120 0.86022 1.90650 1.51957 1.16254 1.85157 1.21510 0.95870 0.98522 0.87739 0.88526 1.59192 1.16621 1.22000 1.36779 1.20553 0.93049 1.00541 0.96646 1.19663 0.97679 0.93555 0.95183 1.21079 1.00212 0.93554 0.98961 1.21064 1.00076 0.99557 0.93464 1.21073 1.01212 0.94884 0.97642 1.21110 1.00331 0.94135 0.98655 1.20981 0.97634 0.99973 0.92409 0.95476 0.89134 0.96834 0.92550 0.77888 0.84517 0.84035 0.90424 0.89853 0.86159 0.86480 0.86680 0.86525 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.61 2.56 -69.09 -0.18 6.44 16 3 H 0.05 1.37 7.58 -51.92 -0.39 0.98 16 4 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.83 11.32 55.43 0.63 -24.21 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.70 -14.21 5.07 -54.94 -0.28 -14.49 16 13 C 0.47 8.89 7.03 -10.98 -0.08 8.81 16 14 O -0.56 -12.85 15.91 5.56 0.09 -12.76 16 15 C 0.08 1.12 3.14 -68.86 -0.22 0.90 16 16 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 17 N -0.82 -10.75 8.36 -5.65 -0.05 -10.79 16 18 C -0.07 -0.90 4.98 -27.89 -0.14 -1.04 16 19 C -0.06 -0.73 4.95 -104.63 -0.52 -1.25 16 20 C -0.12 -1.36 9.70 -39.59 -0.38 -1.74 16 21 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 22 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.09 -1.06 9.31 -39.59 -0.37 -1.43 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 30 H 0.34 4.45 9.06 -39.30 -0.36 4.09 16 31 H 0.35 4.68 8.58 -39.29 -0.34 4.35 16 32 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -30.23 323.39 -8.39 -38.62 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.51 Total: 13.63 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.12 Total: -10.33 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.30 Total: -49.49 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.23 -8.39 -38.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392361.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.016 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds